Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Forward (+)

18971189 .. 18972365

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCACCTTTACGACCAATGCAACGGAAGATGGGAATACAACATGCTTCCCTTTTTTCAGAGAGAATTGGTTGGAGTTGGTTAGGATTCTTTGCTGCCAATACAGCCATCGGAATCTGTTGAGAAATTCTCAGTTTGATATGCCAATGCCACAGAGCAAGGTGCTGCCACCCCAGAACCCATTTTTGCCTCTCACGTCTGAAGAAGGCGAGAAGTTCCAACATGTTTCTGGACCTGTAATGGGCAATGTGGTGGATCCTGCCCCGTATTCATTGCGTTTACCAGCCATGGTTAATGATGCTAATCATCAATACAATTCTCCTGGTTTAAGGGGGTTGAGAAAAGTCACTGAACAAGTTCGGCCTCAGGTCGAACCTAAGGTAGATGAAAGAGATTCGTTGCTGCCAAAGATAAGAACTAAGCCTGCAACGGTGGCAAAATCTTTAACATTGACAAGACCCAGCATTCATGGTCCTGCAACCAACTTGAGGGTTGCTGCTATCTTAGAGAAAGCAAATGCAATTCGCCAGGTTTTTATCGTGCTACAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.69

Weight (kDa)

9.33

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	242, 489
AflIII	ACRYGT	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	322, 528
AlwI	GGATC	2 cut(s)	251, 264
AoxI	GGCC	2 cut(s)	3, 362
ApeKI	GCWGC	4 cut(s)	96, 166, 403, 497
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	233, 473
AvaII	GGWCC	2 cut(s)	233, 473
AxyI	CCTNAGG	2 cut(s)	366, 378
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	83, 153, 390, 484
BccI	CCATC	2 cut(s)	26, 117
BciT130I	CCWGG	2 cut(s)	324, 530
BfaI	CTAG	1 cut(s)	553
BisI	GCNGC	4 cut(s)	97, 167, 404, 498
BlsI	GCNGC	4 cut(s)	98, 168, 405, 499
Bme1390I	CCNGG	2 cut(s)	324, 530
Bme18I	GGWCC	2 cut(s)	233, 473
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	233, 473
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	324, 530
BmsI	GCATC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpuEI	CTTGAG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 489
Bse21I	CCTNAGG	2 cut(s)	366, 378
Bse3DI	GCAATG	2 cut(s)	253, 272
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	324, 530
BseDI	CCNNGG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	242, 489
BseMI	GCAATG	2 cut(s)	253, 272
BseMII	CTCAG	2 cut(s)	146, 380
BseXI	GCAGC	4 cut(s)	83, 153, 390, 484
BseYI	CCCAGC	1 cut(s)	461
BshFI	GGCC	2 cut(s)	5, 364
BslI	CCNNNNNNNGG	2 cut(s)	242, 489
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	5, 364
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	288
BspANI	GGCC	2 cut(s)	5, 364
BspCNI	CTCAG	2 cut(s)	145, 379
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	2 cut(s)	251, 264
BsrDI	GCAATG	2 cut(s)	253, 272
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	324, 530
Bst4CI	ACNGT	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	5 cut(s)	132, 366, 378, 420, 505
BstDSI	CCRYGG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 434
BstNI	CCWGG	2 cut(s)	324, 530
BstNSI	RCATGY	2 cut(s)	48, 227
BstSCI	CCNGG	2 cut(s)	322, 528
BstV1I	GCAGC	4 cut(s)	83, 153, 390, 484
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	2 cut(s)	366, 378
BsuRI	GGCC	2 cut(s)	5, 364
BtgI	CCRYGG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	233, 473
CviAII	CATG	4 cut(s)	45, 224, 289, 470
CviJI	RGCY	5 cut(s)	5, 108, 287, 364, 424
CviKI_1	RGCY	5 cut(s)	5, 108, 287, 364, 424
DdeI	CTNAG	5 cut(s)	132, 366, 378, 420, 505
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	233, 473
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	2 cut(s)	366, 378
EcoRII	CCWGG	2 cut(s)	322, 528
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	48, 227, 292, 473
FaiI	YATR	5 cut(s)	46, 143, 225, 290, 471
FatI	CATG	4 cut(s)	44, 223, 288, 469
Fnu4HI	GCNGC	4 cut(s)	97, 167, 404, 498
Fsp4HI	GCNGC	4 cut(s)	97, 167, 404, 498
FspBI	CTAG	1 cut(s)	553
GluI	GCNGC	4 cut(s)	97, 167, 404, 498
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	5, 364
Hin1II	CATG	4 cut(s)	48, 227, 292, 473
HinfI	GANTC	3 cut(s)	88, 115, 395
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	62, 114, 202
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	23, 428, 479, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 434
HpyF3I	CTNAG	5 cut(s)	132, 366, 378, 420, 505
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	48, 227, 292, 473
Kzo9I	GATC	1 cut(s)	256
Lsp1109I	GCAGC	4 cut(s)	83, 153, 390, 484
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	553
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	41, 215
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	67, 127, 316, 522
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	54, 244
MnlI	CCTC	3 cut(s)	201, 375, 483
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	294, 329, 446
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	324, 530
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	324, 530
MwoI	GCNNNNNNNGC	2 cut(s)	105, 434
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	4 cut(s)	48, 227, 292, 473
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	2 cut(s)	48, 227
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	88, 115, 395
PkrI	GCNGC	4 cut(s)	98, 168, 405, 499
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	322, 528
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	322, 528
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	233, 473
PsuI	RGATCY	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	294, 329, 446
SatI	GCNGC	4 cut(s)	97, 167, 404, 498
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	233, 473
ScrFI	CCNGG	2 cut(s)	324, 530
SetI	ASST	8 cut(s)	11, 165, 200, 238, 372, 379, 384, 534
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	2 cut(s)	233, 473
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	67, 127, 316, 522
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	322, 528
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	67, 127, 316, 522
TfiI	GAWTC	3 cut(s)	88, 115, 395
Tru1I	TTAA	3 cut(s)	294, 329, 446
Tru9I	TTAA	3 cut(s)	294, 329, 446
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	4 cut(s)	96, 166, 403, 497
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	261, 402, 458
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	233, 473
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	2 cut(s)	48, 227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.