Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433481.1

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

797 .. 1445

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433481.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgccggactcagaatttgggaagtctaatggaacagtgaataagatccctcgtcctagaaatccccttattgatgctgtcactgctcatggccaaagcaagttgaaaaaggcaagtgaacgaattcagcctcagattgaaccaaaggtagacgaaagagatttatttctgcaacagataagaaccaagtccttcaacctgaagcctgcaaatgtgacaagatccacaccacgacccaatattcagggtcataatcccaacttgaaggtcatctctctcttagagaaaaaagcaagtgcaatccgccaggcatttgtgggaagtgatgaagatgatgatgagagttggagtgattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

9.34

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	2 cut(s)	40, 216
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	14, 123
AcuI	CTGAAG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	106, 140, 196, 265
AjnI	CCWGG	1 cut(s)	306
AlwI	GGATC	2 cut(s)	40, 216
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	14, 123
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	24, 146
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	5
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	45, 221
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	23, 145
BspPI	GGATC	2 cut(s)	40, 216
BssMI	GATC	2 cut(s)	45, 221
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	10, 132, 280, 357
BstKTI	GATC	2 cut(s)	48, 224
BstMBI	GATC	2 cut(s)	45, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	45, 221
BstYI	RGATCY	2 cut(s)	45, 221
BsuRI	GGCC	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	42, 81
Cac8I	GCNNGC	1 cut(s)	207
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	3 cut(s)	93, 130, 205
CviKI_1	RGCY	3 cut(s)	93, 130, 205
DdeI	CTNAG	4 cut(s)	10, 132, 280, 357
DpnI	GATC	2 cut(s)	47, 223
DpnII	GATC	2 cut(s)	45, 221
EaeI	YGGCCR	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	92
FaiI	YATR	2 cut(s)	90, 252
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	2 cut(s)	8, 353
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	2 cut(s)	119, 151
Hpy188I	TCNGA	2 cut(s)	13, 135
Hpy8I	GTNNAC	2 cut(s)	119, 151
HpyAV	CCTTC	2 cut(s)	202, 259
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	172, 209, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	10, 132, 280, 357
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	45, 221
LpnPI	CCDG	6 cut(s)	18, 212, 219, 230, 293, 320
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	79, 214
MalI	GATC	2 cut(s)	47, 223
MboI	GATC	2 cut(s)	45, 221
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	2 cut(s)	45, 221
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	14, 123
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	2 cut(s)	60, 141
Mox20I	TGGCCA	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	45, 221
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	79, 214
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	45, 221
Sau3AI	GATC	2 cut(s)	45, 221
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	3 cut(s)	150, 201, 270
SfaNI	GCATC	1 cut(s)	64
Sse9I	AATT	2 cut(s)	14, 123
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	2 cut(s)	14, 123
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	2 cut(s)	42, 88
TseFI	GTSAC	2 cut(s)	79, 214
Tsp45I	GTSAC	2 cut(s)	79, 214
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	42, 88
XapI	RAATTY	2 cut(s)	14, 123
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.