Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Forward (+)

40474641 .. 40482199

Gene Structure 7559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4899 bp

ATGCCGTTGACGCGGTACCAGATACGGAACGAGTACGGCTTGGCCGATCCGGAGCTCTACAAAGCCGCCGATAGAGATGATCCGGAGGCCTTACTCGAAGGCGTCGCCATGGCTGGACTCGTCGGCGTCTTGCGTCAGCTTGGCGACCTTGCCGAGTTTGCTGCTGAAATATTTCATGACTTGCATGAAGAAGTAATGGCAACCGCTACAAGAGGCCACGGTCTAATGGTTCGCGTCCAACAGCTTGAAGCAGATTTTCCTTCAATTGAGAAGGCACTTCTATCTCAAACGAATCATTCACCGTTTTTTTCAAATACAGGTGTTGACTGGAATCCTAATCTGCGTTGCGAACAGAATCTGATCACCCGTGGAGACTTACCTCGCTTTGTAATGGATTCTTATGAAGAATGCCGTGCTCCTCCTCGGTTATTCCTTCTGGACAAGTTTGATGTTGCTGGGGCTGGGGCATGTTTAAAGCGATACACTGATCCGTCATTCTTTAAAGTGGAATCGGCATACTCATTAGCACCAGCAGATATGCAGAGAGAAAGGAAGATCCGTAAAGTAAAGCAGAAGAAAGGATCACGCTGGAGGAATGGTGGAACCCCAGAAGTTTTACTGCCATCACATGCTAAACTGCATGAGTTATTTCTGGAGGAGCGCATTCAGAATGGTTACAGTGACCCTGCTCGTCGTGTGAAATTAAAGAAAAGACATTTGAATGGATCCGCAGTTGACTCAAAAACCAAGAAAAGTTACATGGATAAATTTATGGAGACTCATTCACCGGAGCGTAAACTGGTTTGTGCAACTTCTGTTACTTCCCCGCTCTTGAATTTGAGCTCAGATAATAAGAATGAGTCAGGGCTTAGAATACTTGACATTAGTATTGTGAGTCCAGCAGAAAAGTCTCCGGAAAGTAGTGCCAGTTCTTCAACTAAACACCAAGAAGTTATATCAAAACAATCAATGGATGGTTTGAATGGGGGCTCTTTCTATGGAGAAATTGCCAAGGGGTCTGAACCAAATTCTGATGGTGAAAGTGATAACAGCTATTCCAACCTTCAAATGGTAGCAGTTGAGAAGGAATTAGAAGTTGATGGAGAAGACAAAACTGAAGGCAGTGTAGAGGGATACAATTCGGATGATTTGCCCAGTGAGGTAGATAATTACGTGGATGCTCTTGCTACTATTGATTCAGAAGTGGATACGGACAATGAGAGCAGAGCTAAGAGCAATCTAGGCTTAATGAAGGTTGACAAATGCAGGACAGACTCTGATGCAAATGAAGAGGAAAATGTAGAGCTTCAAGCTCAATCTTTGGATTCTCAATCAAATGAGCACTGTTCTTGGTCAGATGACTGGAATAATTCATTCATAAGAGATAGAGCCAGTCTGCACTCTGATACTTTAAGCAATTTGGTTGAGAATACACCTTCAGAGTGTAATGGAGCAGCTAAAGAATTCCCATCCACTGAAGCTTGTGGAGCTGAGGATACATGTATTGAGGAAAGCATAGCCCCTGATAGTGGAGATATATCTTGCAATAGGTTGGTTGGGGAAATGAGTCCTACACAACCACATCCAGACCATGGAGCAAACTCACCTGTGGCTTCATATGTGGGGCCTTTAATAGATGAAACATCCTCTGATAAAATTAAATTTGGTTCTGAATCATTTGACATAAGAGAAAATGGGACAAATCTGGATCATTTCATGGCAGTTGTTCCTGATGATTCTTCCCAGGCTAAGGATGAGTTCACAAATACTTCTCCTACGCTTCCTCAAGTTGGAGCAGATGAAGAAGATTTAGGTGCCACTTCTGATGATTTACCACGTTTGAAAAATGTTGAAGAATTGGCTTCTGTAAATCATAGCGGCAATGATTCTGTGAATAAAGTGTTTCAGACACAATGTGCTGATGAAGATGCTGTGGGAAGCTTCGCCAGTGGAAAGATTGATTCACCACCTTCAAGTATTCCATCTACAGAAGAGCAGCTCTTTCCCTCAGCAATAAAAGAAATACAAACATCTTCAGGTACTACATTACTGCCTCATAATTCAGATGTTGCAAAGCCTGTCAACAGGGTTTCTGTGGTGGATGATCCTGTTAAACCAACTGCATTCAAATCTGGAGTTATACCATGGAGACGTATCTCAAGAGAGTCATATCCTGGAGGGGATGTTCCAAAGACACATGGCCTAATAGAGCAGAAGAATGCTCCACAGACAAATGTCCTAAAAGAGCAGAAGGATGCTCCACAGGCACATGTCTTAATGGACCAGCAAATCTCCGATTTAGATGAGGATATGTCTCACTATGAAGAGAAATTCAAAACTGAAGAGAGATCTAGGACTGTGGATGATGAGGAGATAGGCTTATTCACCAGCAATGCTGATTCAGAGGGAGGAGATTCTGTTTCTATAGAACTTCCATCAAACTCTCCAACTTATTCAGGCCATGGGGATCATGTACTTTCAGCCAATGTAGAACCTGCAACAGTTCATGGAGAAGATGTGGCTGCGTCCTCTGCTGCTGTTGCCAAATCTGATGATCTCAATGATTTTATTGATACATCTCCAGGCACCAGCAATGTTGATGCAGAGGAAGGAGATTCTGTTTCTGTAGAACTTCCATCGAACTCTCCAACATATTCAGGCCTCGGGAATCTTGTAGTTTCAGACAATATAGTACTTGAAACAGTTCATGTAGAAGATCTTGCTGTGTCCTCTGCTGCTGTTGCCAAATCTGATGATGTCAATGATATTGATACATCTCCAGATGCAAATTGTTCTCCACCATTGAATTTTATGAATTTGCATGAATCTCTTCCTGACTTCAGGGATTCCCATCTGAAAGAATCTGAAATGGATGATGCAGCTTCTCCAAAATTCGTGTCAGATTTAGACCCAAGCAAATCAGTTGCTTATAATCCTTCCAGTTCAAAGGTATTTGATGACGATCATAACTTGTCCCTGGATGAGCAGAATGAACACGGGGTGACTGTCTATGATGACCCCACAGCCTCAACATCTTTGGAAATGAGCAATCAGGAGTCAGAGTTACAATCTCTGGATCAGAGTTGTGGAGAGTATGCTGTGTCATCATCTACCTCTGCCCCTCCAGAACCTGACCTCGAAGAAGCTGAAACGAATTTGGAAATTTTGTTGGAGTTGCAAGCTAATCAAGTTCATATGGAAATTTTGGAAAGAGACGGAGCAAGTGGTCAGCTAGAAGCTGCCTTAGAACGGTCACCGGAGTTTCAGTCTGATCAACTGGGTATGGAAGATTCACAAGAAGATCAAGCTAGTACTAACTCATTAAGTTCTCAATATGCACAGATTGGGTTTCCAAATCACCCAGATAAGGAGATATCCAAACTACCGTCCATGGATCACATCAATCAAGAGACATGCTTGGATGCTTCCTCTGAATCTTTTCCTGAAAACCTTCCAAGTCAACCTTCAACTTCAGAGTTCTTTACAGAATCAGCAGGCCAGGAAACTGATCTTTTAAAGCAAAAAATGGAACCATTAGAGTCTATTCTTCCTAACTTTGTCCAGCCACCTGGGGTCAACCTTGAGGACACGCCACCGTTGCCACCTCTACCACCTATGCAATGGAGGTTAGGAAAGATGCAACATGCTTCGCCAACCTCACATAGAGATTTGGGAGGTGTTAGCAATGATTCATTCTTGCCAATGCAGTCACTGAAAGCTGATGAGAAAGCTCAATTTGATCTACCAGCACCGCAGACAGGGCTACTGCAGCCTCAACACCCATTTTTATCTCTCACAGCAGAAGATATGAAGTCCCAACCTGTTTTTGGACCTTTGGTGGGCCATGTTGTGCCTCCCACACCATTTTCGCAAGAACCAACTGATAATGATTCCAATCATCAATACAATTTTCCTGATTTAGGGGGAATGCAATTCTCAAGCCCATTCATACAACTATCGAAGGTCTCTGGTGACAGCTCTGGACACAATGACATTGATTTAGAGGGAGAGAAGGGTCTGTCTAGTTCGAAGCCAATCACAGTTCCAGGCACTGAATGTACAACATCTGGACAAGACCCTGTATTTTCTCATGGGGAAATTGTCCATCCCCAACAGTTGATGCCGGAAACAGGCTTAGAGCTTGAGGTACTTAAACAATCATTCGATAATTCGGAATTGAAACAAGCTGGACCCCTTGCCACATCTGTGACAGCACCAACTATGGAAGATGAGCAGCCTCAGCATAGTTTGCCAACAACAGAGGGAGGAAAGGTTCAGTCCACTTCAAAGGCATTAACAGTACCAGGAGCTGAATGCACAACTTCTAGACATGACCCTATCCAACCTTTGGAACAATTAACGAAGGAATCAGGTCTAGAGCCTGAGGATCTTTGCTATTCATCGAAAAACTCAGAAAGGGAACAAGAAAAGCCTCTTGCTACATCACTGACAGCTACAACTACAGTAGATGAGAAGCCCCAGCATAGTTTGCCAACATCAGAGGGAGAAACAGCATGGTCATCAAATACTTCTGATGTAATGCCGGACTCAGAATTTGAAAAGTCTAATGGAACAGTGAATAAGATCCCTCGTCCTAGAAATCCCCTTATTGATGCTGTCACTGCTCATGGCCAAAGCAAGTTGAAAAAGGTAAGTGAACGAATTCAGCCTCAGATTGAACCAAAGGTAGACGAAAGAGATTTATTTCTGCAACAGATAAGAACTAAGTCCTTCAACCTGAAGCCTGCAACTGTGACAAGATCCACATCACGACCCAACATTCAGGGTCATAATCCCAACTTGAAGGTCATCTCTCTCTTAGAGAAAAAAGCAAATGCAATCCGCCAGGCATTTGTGGGAAGTGATGAAGATGATGATGAGAGTTGGAGTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1632

Amino Acids

177.87

Weight (kDa)

4.48

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2931
Acc36I	ACCTGC	1 cut(s)	2503
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	3 cut(s)	15, 1814, 2585
AccB7I	CCANNNNNTGG	2 cut(s)	1592, 4348
AccBSI	CCGCTC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	4689
AccII	CGCG	2 cut(s)	13, 234
AccIII	TCCGGA	3 cut(s)	49, 82, 913
AciI	CCGC	8 cut(s)	13, 66, 204, 729, 827, 1878, 3752, 4843
AcoI	YGGCCR	2 cut(s)	42, 4630
AcuI	CTGAAG	8 cut(s)	1137, 1422, 1497, 2019, 2361, 2824, 3456, 4760
AcyI	GRCGYC	2 cut(s)	102, 126
AdeI	CACNNNGTG	2 cut(s)	1916, 3001
AfaI	GTAC	9 cut(s)	17, 35, 2041, 2475, 2694, 3313, 4060, 4149, 4302
AflIII	ACRYGT	2 cut(s)	1499, 2269
AjnI	CCWGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
AjuI	GAANNNNNNNTTGG	2 cut(s)	3448, 3480
AleI	CACNNNNGTG	1 cut(s)	4205
AloI	GAACNNNNNNTCC	4 cut(s)	2169, 2201, 4257, 4289
Alw21I	GWGCWC	4 cut(s)	57, 418, 845, 1344
Alw26I	GTCTC	8 cut(s)	366, 770, 915, 2143, 2319, 3207, 3404, 3970
AlwNI	CAGNNNCTG	6 cut(s)	358, 1277, 3131, 3712, 4052, 4310
Ama87I	CYCGRG	1 cut(s)	2663
Aor13HI	TCCGGA	3 cut(s)	49, 82, 913
ArsI	GACNNNNNNTTYG	4 cut(s)	2882, 2914, 4538, 4570
Asp700I	GAANNNNTTC	6 cut(s)	171, 2703, 2829, 3438, 3450, 4662
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	5 cut(s)	1625, 2281, 3830, 3841, 4190
AsuII	TTCGAA	1 cut(s)	4028
AvaI	CYCGRG	1 cut(s)	2663
AvaII	GGWCC	3 cut(s)	2281, 3830, 4190
AxyI	CCTNAGG	1 cut(s)	4383
BalI	TGGCCA	1 cut(s)	4632
BamHI	GGATCC	1 cut(s)	725
BanI	GGYRCC	3 cut(s)	15, 1814, 2585
BanII	GRGCYC	3 cut(s)	57, 845, 992
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	4 cut(s)	57, 418, 845, 1344
BbvCI	CCTCAGC	3 cut(s)	1491, 2008, 4239
BceAI	ACGGC	2 cut(s)	52, 396
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
BciVI	GTATCC	3 cut(s)	1127, 1201, 1489
BclI	TGATCA	2 cut(s)	360, 3271
BcoDI	GTCTC	8 cut(s)	366, 770, 915, 2143, 2319, 3207, 3404, 3970
BfaI	CTAG	8 cut(s)	1241, 2352, 3233, 3309, 4023, 4326, 4376, 4596
BfmI	CTRYAG	5 cut(s)	1986, 2424, 2625, 3767, 4461
BfuAI	ACCTGC	1 cut(s)	2503
BfuI	GTATCC	3 cut(s)	1127, 1201, 1489
BglII	AGATCT	2 cut(s)	2348, 2716
BmcAI	AGTACT	2 cut(s)	2694, 3313
Bme1390I	CCNGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
Bme18I	GGWCC	3 cut(s)	2281, 3830, 4190
BmeT110I	CYCGRG	1 cut(s)	2663
BmgT120I	GGNCC	5 cut(s)	1625, 2281, 3830, 3841, 4190
BmiI	GGNNCC	8 cut(s)	17, 604, 727, 1626, 1816, 2587, 3531, 4192
BmrFI	CCNGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
BmrI	ACTGGG	2 cut(s)	1149, 3287
BmuI	ACTGGG	2 cut(s)	1149, 3287
BoxI	GACNNNNGTC	1 cut(s)	2234
BpiI	GAAGAC	1 cut(s)	1113
BpmI	CTGGAG	7 cut(s)	610, 674, 2154, 2196, 2565, 2763, 3108
Bpu10I	CCTNAGC	4 cut(s)	1491, 1749, 2008, 4239
Bpu14I	TTCGAA	1 cut(s)	4028
BpuEI	CTTGAG	5 cut(s)	1770, 2143, 3602, 3922, 4163
BsaAI	YACGTR	1 cut(s)	1174
BsaBI	GATNNNNATC	4 cut(s)	2850, 2961, 3894, 4765
BsaHI	GRCGYC	2 cut(s)	102, 126
BsaI	GGTCTC	1 cut(s)	3970
BsaWI	WCCGGW	5 cut(s)	49, 82, 787, 913, 3256
Bse1I	ACTGG	9 cut(s)	332, 804, 927, 1155, 1367, 1392, 1947, 2940, 3282
Bse21I	CCTNAGG	1 cut(s)	4383
Bse3DI	GCAATG	5 cut(s)	1888, 2398, 2599, 3626, 3691
Bse8I	GATNNNNATC	4 cut(s)	2850, 2961, 3894, 4765
BseAI	TCCGGA	3 cut(s)	49, 82, 913
BseBI	CCWGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
BseJI	GATNNNNATC	4 cut(s)	2850, 2961, 3894, 4765
BseMI	GCAATG	5 cut(s)	1888, 2398, 2599, 3626, 3691
BseMII	CTCAG	8 cut(s)	858, 1482, 2022, 4253, 4374, 4425, 4563, 4685
BseNI	ACTGG	9 cut(s)	332, 804, 927, 1155, 1367, 1392, 1947, 2940, 3282
BseRI	GAGGAG	5 cut(s)	408, 411, 671, 2384, 2424
BseYI	CCCAGC	3 cut(s)	455, 461, 4479
BsgI	GTGCAG	1 cut(s)	1382
Bsh1236I	CGCG	2 cut(s)	13, 234
BshNI	GGYRCC	3 cut(s)	15, 1814, 2585
BsiHKAI	GWGCWC	4 cut(s)	57, 418, 845, 1344
BsiHKCI	CYCGRG	1 cut(s)	2663
BsiSI	CCGG	7 cut(s)	50, 83, 788, 914, 3257, 4124, 4544
BslFI	GGGAC	3 cut(s)	1711, 2959, 3799
BsmAI	GTCTC	8 cut(s)	366, 770, 915, 2143, 2319, 3207, 3404, 3970
BsmBI	CGTCTC	2 cut(s)	2143, 3207
BsmFI	GGGAC	3 cut(s)	1711, 2959, 3799
BsmI	GAATGC	6 cut(s)	413, 663, 2123, 2224, 3933, 4319
Bso31I	GGTCTC	1 cut(s)	3970
BsoBI	CYCGRG	1 cut(s)	2663
Bsp119I	TTCGAA	1 cut(s)	4028
Bsp1286I	GDGCHC	5 cut(s)	57, 418, 845, 992, 1344
Bsp13I	TCCGGA	3 cut(s)	49, 82, 913
Bsp1407I	TGTACA	1 cut(s)	4058
Bsp19I	CCATGG	5 cut(s)	108, 1591, 2144, 2461, 3390
BspACI	CCGC	8 cut(s)	13, 66, 204, 729, 827, 1878, 3752, 4843
BspCNI	CTCAG	8 cut(s)	857, 1483, 2021, 4252, 4375, 4424, 4562, 4684
BspEI	TCCGGA	3 cut(s)	49, 82, 913
BspFNI	CGCG	2 cut(s)	13, 234
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	8 cut(s)	17, 604, 727, 1626, 1816, 2587, 3531, 4192
BspMAI	CTGCAG	1 cut(s)	3771
BspMI	ACCTGC	1 cut(s)	2503
BspQI	GCTCTTC	1 cut(s)	1986
BspT104I	TTCGAA	1 cut(s)	4028
BspT107I	GGYRCC	3 cut(s)	15, 1814, 2585
BspTNI	GGTCTC	1 cut(s)	3970
BsrBI	CCGCTC	1 cut(s)	829
BsrDI	GCAATG	5 cut(s)	1888, 2398, 2599, 3626, 3691
BsrGI	TGTACA	1 cut(s)	4058
BsrI	ACTGG	9 cut(s)	332, 804, 927, 1155, 1367, 1392, 1947, 2940, 3282
BssNI	GRCGYC	2 cut(s)	102, 126
BssT1I	CCWWGG	6 cut(s)	108, 1011, 1591, 2144, 2461, 3390
Bst2UI	CCWGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
Bst6I	CTCTTC	5 cut(s)	1284, 1986, 2319, 2337, 2835
BstACI	GRCGYC	2 cut(s)	102, 126
BstAPI	GCANNNNNTGC	2 cut(s)	4249, 4489
BstAUI	TGTACA	1 cut(s)	4058
BstBAI	YACGTR	1 cut(s)	1174
BstBI	TTCGAA	1 cut(s)	4028
BstC8I	GCNNGC	3 cut(s)	3180, 3496, 4746
BstDSI	CCRYGG	7 cut(s)	108, 217, 367, 1591, 2144, 2461, 3390
BstEII	GGTNACC	1 cut(s)	3252
BstENI	CCTNNNNNAGG	1 cut(s)	3918
BstFNI	CGCG	2 cut(s)	13, 234
BstHHI	GCGC	1 cut(s)	663
BstMAI	GTCTC	8 cut(s)	366, 770, 915, 2143, 2319, 3207, 3404, 3970
BstNI	CCWGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
BstNSI	RCATGY	6 cut(s)	471, 632, 1503, 2273, 3417, 3647
BstPAI	GACNNNNGTC	1 cut(s)	2234
BstPI	GGTNACC	1 cut(s)	3252
BstSCI	CCNGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
BstSFI	CTRYAG	5 cut(s)	1986, 2424, 2625, 3767, 4461
BstUI	CGCG	2 cut(s)	13, 234
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	7 cut(s)	555, 725, 2348, 2716, 4387, 4584, 4760
BstXI	CCANNNNNNTGG	1 cut(s)	3569
BstYI	RGATCY	7 cut(s)	555, 725, 2348, 2716, 4387, 4584, 4760
Bsu36I	CCTNAGG	1 cut(s)	4383
BsuI	GTATCC	3 cut(s)	1127, 1201, 1489
BtgI	CCRYGG	7 cut(s)	108, 217, 367, 1591, 2144, 2461, 3390
BtsI	GCAGTG	2 cut(s)	1129, 4620
BveI	ACCTGC	1 cut(s)	2503
Cac8I	GCNNGC	3 cut(s)	3180, 3496, 4746
CaiI	CAGNNNCTG	6 cut(s)	358, 1277, 3131, 3712, 4052, 4310
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	5 cut(s)	1625, 2281, 3830, 3841, 4190
CseI	GACGC	6 cut(s)	19, 91, 115, 122, 223, 2514
Csp6I	GTAC	9 cut(s)	16, 34, 2040, 2474, 2693, 3312, 4059, 4148, 4301
CviQI	GTAC	9 cut(s)	16, 34, 2040, 2474, 2693, 3312, 4059, 4148, 4301
DraI	TTTAAA	3 cut(s)	474, 502, 3516
DraIII	CACNNNGTG	2 cut(s)	1916, 3001
EaeI	YGGCCR	2 cut(s)	42, 4630
Eam1104I	CTCTTC	5 cut(s)	1284, 1986, 2319, 2337, 2835
EarI	CTCTTC	5 cut(s)	1284, 1986, 2319, 2337, 2835
EciI	GGCGGA	1 cut(s)	4832
Ecl136II	GAGCTC	2 cut(s)	55, 843
Eco130I	CCWWGG	6 cut(s)	108, 1011, 1591, 2144, 2461, 3390
Eco147I	AGGCCT	2 cut(s)	89, 2661
Eco24I	GRGCYC	3 cut(s)	57, 845, 992
Eco31I	GGTCTC	1 cut(s)	3970
Eco32I	GATATC	1 cut(s)	3375
Eco47I	GGWCC	3 cut(s)	2281, 3830, 4190
Eco53kI	GAGCTC	2 cut(s)	55, 843
Eco57I	CTGAAG	8 cut(s)	1137, 1422, 1497, 2019, 2361, 2824, 3456, 4760
Eco81I	CCTNAGG	1 cut(s)	4383
Eco88I	CYCGRG	1 cut(s)	2663
Eco91I	GGTNACC	1 cut(s)	3252
EcoICRI	GAGCTC	2 cut(s)	55, 843
EcoNI	CCTNNNNNAGG	1 cut(s)	3918
EcoO109I	RGGNCCY	1 cut(s)	1625
EcoO65I	GGTNACC	1 cut(s)	3252
EcoRI	GAATTC	2 cut(s)	1463, 4662
EcoRII	CCWGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
EcoRV	GATATC	1 cut(s)	3375
EcoT14I	CCWWGG	6 cut(s)	108, 1011, 1591, 2144, 2461, 3390
EcoT38I	GRGCYC	3 cut(s)	57, 845, 992
ErhI	CCWWGG	6 cut(s)	108, 1011, 1591, 2144, 2461, 3390
Esp3I	CGTCTC	2 cut(s)	2143, 3207
FalI	AAGNNNNNCTT	2 cut(s)	3448, 3480
FaqI	GGGAC	3 cut(s)	1711, 2959, 3799
FauI	CCCGC	1 cut(s)	834
FauNDI	CATATG	2 cut(s)	1618, 3195
FbaI	TGATCA	2 cut(s)	360, 3271
FblI	GTMKAC	1 cut(s)	4689
FriOI	GRGCYC	3 cut(s)	57, 845, 992
FspBI	CTAG	8 cut(s)	1241, 2352, 3233, 3309, 4023, 4326, 4376, 4596
GlaI	GCGC	1 cut(s)	662
GsaI	CCCAGC	3 cut(s)	459, 465, 4483
GsuI	CTGGAG	7 cut(s)	610, 674, 2154, 2196, 2565, 2763, 3108
HapII	CCGG	7 cut(s)	50, 83, 788, 914, 3257, 4124, 4544
HgaI	GACGC	6 cut(s)	19, 91, 115, 122, 223, 2514
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	2 cut(s)	102, 126
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	7 cut(s)	9, 325, 736, 1258, 2083, 3461, 3577
HindII	GTYRAC	7 cut(s)	9, 325, 736, 1258, 2083, 3461, 3577
HindIII	AAGCTT	2 cut(s)	1479, 1939
HpaII	CCGG	7 cut(s)	50, 83, 788, 914, 3257, 4124, 4544
Hpy99I	CGWCG	3 cut(s)	107, 125, 696
HpyCH4IV	ACGT	3 cut(s)	1173, 1837, 2152
HpySE526I	ACGT	3 cut(s)	1173, 1837, 2152
Hsp92I	GRCGYC	2 cut(s)	102, 126
HspAI	GCGC	1 cut(s)	661
Kpn2I	TCCGGA	3 cut(s)	49, 82, 913
KpnI	GGTACC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	360, 3271
LguI	GCTCTTC	1 cut(s)	1986
MaeI	CTAG	8 cut(s)	1241, 2352, 3233, 3309, 4023, 4326, 4376, 4596
MaeII	ACGT	3 cut(s)	1173, 1837, 2152
MbiI	CCGCTC	1 cut(s)	829
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	7 cut(s)	555, 725, 2348, 2716, 4387, 4584, 4760
MhlI	GDGCHC	5 cut(s)	57, 418, 845, 992, 1344
MlsI	TGGCCA	1 cut(s)	4632
MluNI	TGGCCA	1 cut(s)	4632
MmeI	TCCRAC	8 cut(s)	262, 1083, 1771, 2471, 2672, 3150, 4366, 4865
Mox20I	TGGCCA	1 cut(s)	4632
MroI	TCCGGA	3 cut(s)	49, 82, 913
MroXI	GAANNNNTTC	6 cut(s)	171, 2703, 2829, 3438, 3450, 4662
MscI	TGGCCA	1 cut(s)	4632
MslI	CAYNNNNRTG	2 cut(s)	720, 4205
Msp20I	TGGCCA	1 cut(s)	4632
MspI	CCGG	7 cut(s)	50, 83, 788, 914, 3257, 4124, 4544
MspR9I	CCNGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	6 cut(s)	413, 663, 2123, 2224, 3933, 4319
MvaI	CCWGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
MvnI	CGCG	2 cut(s)	13, 234
NcoI	CCATGG	5 cut(s)	108, 1591, 2144, 2461, 3390
NdeI	CATATG	2 cut(s)	1618, 3195
NlaIV	GGNNCC	8 cut(s)	17, 604, 727, 1626, 1816, 2587, 3531, 4192
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	8 cut(s)	680, 3001, 3252, 3708, 3971, 4207, 4618, 4753
NspI	RCATGY	6 cut(s)	471, 632, 1503, 2273, 3417, 3647
NspV	TTCGAA	1 cut(s)	4028
OliI	CACNNNNGTG	1 cut(s)	4205
PagI	TCATGA	1 cut(s)	175
PceI	AGGCCT	2 cut(s)	89, 2661
PciI	ACATGT	2 cut(s)	1499, 2269
PciSI	GCTCTTC	1 cut(s)	1986
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	6 cut(s)	413, 663, 2123, 2224, 3933, 4319
PdmI	GAANNNNTTC	6 cut(s)	171, 2703, 2829, 3438, 3450, 4662
PflMI	CCANNNNNTGG	2 cut(s)	1592, 4348
PfoI	TCCNGGA	1 cut(s)	2173
Ppu21I	YACGTR	1 cut(s)	1174
PscI	ACATGT	2 cut(s)	1499, 2269
PshAI	GACNNNNGTC	1 cut(s)	2234
PsiI	TTATAA	1 cut(s)	2931
Psp124BI	GAGCTC	2 cut(s)	57, 845
Psp6I	CCWGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
PspEI	GGTNACC	1 cut(s)	3252
PspFI	CCCAGC	3 cut(s)	455, 461, 4479
PspGI	CCWGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
PspN4I	GGNNCC	8 cut(s)	17, 604, 727, 1626, 1816, 2587, 3531, 4192
PspPI	GGNCC	5 cut(s)	1625, 2281, 3830, 3841, 4190
PsrI	GAACNNNNNNTAC	2 cut(s)	913, 945
PstI	CTGCAG	1 cut(s)	3771
PstNI	CAGNNNCTG	6 cut(s)	358, 1277, 3131, 3712, 4052, 4310
PsuI	RGATCY	7 cut(s)	555, 725, 2348, 2716, 4387, 4584, 4760
RsaI	GTAC	9 cut(s)	17, 35, 2041, 2475, 2694, 3313, 4060, 4149, 4302
RsaNI	GTAC	9 cut(s)	16, 34, 2040, 2474, 2693, 3312, 4059, 4148, 4301
RseI	CAYNNNNRTG	2 cut(s)	720, 4205
SacI	GAGCTC	2 cut(s)	57, 845
SapI	GCTCTTC	1 cut(s)	1986
Sau96I	GGNCC	5 cut(s)	1625, 2281, 3830, 3841, 4190
ScaI	AGTACT	2 cut(s)	2694, 3313
ScrFI	CCNGG	9 cut(s)	1745, 2175, 2583, 2978, 3500, 3570, 4047, 4305, 4847
SduI	GDGCHC	5 cut(s)	57, 418, 845, 992, 1344
SfcI	CTRYAG	5 cut(s)	1986, 2424, 2625, 3767, 4461
SfuI	TTCGAA	1 cut(s)	4028
SinI	GGWCC	3 cut(s)	2281, 3830, 4190
SmiMI	CAYNNNNRTG	2 cut(s)	720, 4205
SmlI	CTYRAG	5 cut(s)	1785, 2158, 3581, 3937, 4142
SmoI	CTYRAG	5 cut(s)	1785, 2158, 3581, 3937, 4142
SseBI	AGGCCT	2 cut(s)	89, 2661
SsiI	CCGC	8 cut(s)	13, 66, 204, 729, 827, 1878, 3752, 4843
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	8 cut(s)	1241, 2352, 3233, 3309, 4023, 4326, 4376, 4596
SstI	GAGCTC	2 cut(s)	57, 845
StuI	AGGCCT	2 cut(s)	89, 2661
StyD4I	CCNGG	9 cut(s)	1743, 2173, 2581, 2976, 3498, 3568, 4045, 4303, 4845
StyI	CCWWGG	6 cut(s)	108, 1011, 1591, 2144, 2461, 3390
TaiI	ACGT	3 cut(s)	1176, 1840, 2155
TaqI	TCGA	7 cut(s)	96, 2639, 3138, 3959, 4028, 4164, 4403
TatI	WGTACW	4 cut(s)	2473, 2692, 3311, 4058
TauI	GCSGC	2 cut(s)	68, 1881
TseFI	GTSAC	8 cut(s)	680, 3001, 3252, 3708, 3971, 4207, 4618, 4753
Tsp45I	GTSAC	8 cut(s)	680, 3001, 3252, 3708, 3971, 4207, 4618, 4753
TspGWI	ACGGA	5 cut(s)	40, 480, 548, 1226, 3231
Van91I	CCANNNNNTGG	2 cut(s)	1592, 4348
VpaK11BI	GGWCC	3 cut(s)	2281, 3830, 4190
XagI	CCTNNNNNAGG	1 cut(s)	3918
XbaI	TCTAGA	2 cut(s)	4325, 4375
XceI	RCATGY	6 cut(s)	471, 632, 1503, 2273, 3417, 3647
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1066, 3618, 3824
XmiI	GTMKAC	1 cut(s)	4689
XmnI	GAANNNNTTC	6 cut(s)	171, 2703, 2829, 3438, 3450, 4662
XspI	CTAG	8 cut(s)	1241, 2352, 3233, 3309, 4023, 4326, 4376, 4596
ZrmI	AGTACT	2 cut(s)	2694, 3313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.