Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

8835333 .. 8843047

Gene Structure 7715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4932 bp

ATGCCGTTGATGCGGTACCAGATACGGAACGAGTACGGCTTGGCCGATCCGGAGCTCTACAAAGCCGCCGATAGAGATGATCCGGAGGCCTTACTCGAAGGCGTCGCCATGGCTGGACTCGTCGGCGTCTTGCGTCAGCTTGGCGACCTTGCCGAGTTTGCTGCTGAAATATTTCATGACTTGCATGAAGAAGTAATGGCAACCGCTACAAGAGGCCACGGTCTAATGGTTCGCGTCCAACAGCTTGAAGCAGATTTTCCTTCAATTGAGAAGGCACTTCTATCTCAAACAAATCATTCGCCCTTTTTTTCAAATACAGGTGTTGACTGGCATCCTAATATGCGTTGCGAACAGAATCTGATCACCCGTGGAGACTTACCTCGCTTTGTAATGGATTCTTATGAAGAATGCCGTGCTCCTCCTCGGTTATTCCTTCTGGACAAGTTTGATGTTGCTGGGGCTGGGGCATGTTTAAAGCGATACACTGATCCGTCATTCTTTAAAGTGGAATCGGCATACTCATTAGCACCAGCAGATATGCAGAGAGAAAGGAAGATCCGTAAAGTAAAGAAGAAAGGATCACGCTGGAGGAATGGTGAAACCCCAGAAGTTTTACTGCCATCACATGCTAAACTGCATGAGTTATTTCTGGAGGAGCGCATTCAGAATGGTTACAGTGACCCTGCTCGTCGTGTGAAATTAAAGAAAAGACATTTGAATGGATCTGCAGTTGACTCAAAAACCAAGAAAAGTTACATGGATAAATTTATGGAGATTCATTCACCAGAGCGTAAACTGGTTTGTGCAACTTCTGTTACTTCCCCGCTCTTGAATTTGAGCTCAGATAATAAGAATGAGTCGGGGCTTAGAATACTTGACATTAGTATTGTGAGTCCTGCAGAAAAGTCTCCGGAAAGGAGTAGTGCTAGTTCTTCAACTACTAAACACCAAGAAGTCATATCAAAACAATCGATGGATGGTTTGAATGGGGGCTCTTTCTATGGAGAACCAAATTCTGATGGTGGAAGTGACAACAGCTATTCCAACCTTCAAATGGTAGCAGTTGAGAAGGAATTAGAAGTTGATGGAGAAGACAAAACTGAAGGCAGTGTAGAGGGATACAATTCTGATGATTTGCCCAGTGAGGTAGATAATTACGTGGATGCTCTTGCTACTATGGATTCAGAAGTGGATACGGACAATGATAGCAGAGCTAAGAGCAATCTAGGCTTAATGAAGGTTGACAAATGCAGGACAGACTCTGATGCAAATGAGGAGGAACATGTAGAGTTTCAAGCTCAATCTTTGGATTCTCAATCAAATGAGAACTCTTCTTGGTCAGATGACTGGAATAATTCATTCATAAGAGATAGAGCCAGTCTGCACTCTGACACTTTAAGCAATTTGGTTGAGAATACACCTTCAGAGTGTAATGGAGCAGCTAAAGAATTACCATCCACTGAAGCTTGTGGAGCTGAGGATACATGTATTGAGGAAAGCATAAACCCTGATAGTGGAGATATATCTTGCAATAGGATGGTTGGGGAAATGAGTCCTACACAACCACATCCAGACCATGGAGCAAAGTCACCTGTGGCTTCATATGTGGGACCTTTAATAGATGAAACATCCTCCTATAAAATTAAATTTGGTTCCGAATCATTTGACATCAGAGAAAATGGGACAAATCTGGATCATTTCATGACAGTTGTTCCTGATGGTTCTTCCCAGGCTAAGGATGAGTTCACAAATACTTCTCCTACGCTTCCTCTAGTTGAAGCAGATAAAGAAGATTTAGGTGCCACTTCTGATGATTTACCGCATTTGAAAAATGTTGAAGAATTGGCTTCTGTAAATCATAGCGGCAATGATTCTGTGAATAAAGTGTTTCAGACACAATGTGCTGATGAAGATGCTGTGGGAAGCTTCGCCAGTAGAAAGATTGATTCACCACTTTCAAGTATTCCATCTACAGAAGAGCAGCTCTTTCCCTCAGCAATGAAAGAAATACAAACATCTTCAGGTTCTACATTACTGCCTCATAATTCAGATGTTGCAAAGCCTGTCAACAGGGTTTCTGTGGTGGATGATCCTGTTAAACCAACTGCATTCAAATCTGGAGTTATACCATGGAGACGTATCTCAAGAGAGTCATATCCTGGAGGGGATGCTCCAAAGACACATGGCCTAATAGAGCAGAAGGATGCTCCACAGACACATGTCCTAAAAGAGCAGAAGGATGCTCCACAGACACATGTCTTAATGGACCAGCAAATCTCTGATTTAGATGAGGATATGTCCCACTATGAAGAGAAATTCAAAACTGAAGAGAGATCTAGGACTGTGGATGATGAGGAGATAGGCTTATTCACCAGCAATGCTGATTCAGAGGGAGGAGATTCTGTTTCTATAGAACTTCCATCAAACTCTCCAACTTATTCAGGCCGTGGGGATCATGTACCTTCAGCCAATATAGAACCTGCAACAGTTCATGTAGAAGATGTGCGTGCGTCCTCTGCTGCTGTTACCAAATCTGATGATGTCAATGATTTTATTGATACATATCCAGAGGAAGGAGATTCTGTTTCTGTAGAACTTCCATCGAACCCAACATATTCAGGCCTTGGGAATCTTGTAGTTTCAGACAATATAGTACTTGAAACAGTTCATGTAGAAGATCTTGCTGTGTCCTCTGCTGCTGTTGCCAAATCTGATGATGTCAATGATATTGATACATCTCCAGACGCAAATTGTTCTCCACCATTGAATTTTATGAATTTGCATGAATCTCTTCCTGACTTCAGGGATTCCCATCTGAAAGAATCTGAAATGGATGATGTAGCTTCTCCAAAATTCGTGTCAGACTCAGAAATGCAAAAGGAAGCAAGTAAAGTTGAAGTTGTTTCGCCAGATTCAGATTCCGACCCAAGCAAATCAGTTGCTTATAATCCTTCCAGTTCAAAGGTATTTGATGACGATCATAACTTGTCCCTGGATGAGCAGAATGAACATGGTGTGACTGTCTATGATGACCCCACAGCCTCAACATCTTTGGAAATGAGCAATCAGGAGTCAGAGTTGCAATCTCTGGATCAGACTTGTGGAGAGTATGCTGTGTCATCATCTACCTCTGCCCTTCCAGAACCTGACCTCCAAGAAGCTGAAACGAATTTAGACATTTTGTCGGAGTTGCAAGCTAATCAAGTTCATATGGAAAATTTGGAAAGAGACGGAGCAAGTGGTCAGCTAGAAGCTTCCTTAGAACGGTCGCCGGAGTTTCAGTCTGATCAACTGGGTATGGAAGATTCACAAGAAGATCAAGCTAGTACTAACTCATTAAGTTCTCAATATGCACAGATTGGATTTCCAAATCACCCAGATAAGGAGATATCCAAACTACCATCCATGGAAGATTCACAAGAAGATCAAGCTAGTACCAACTCATTAAGTTCTCAAGATGCACAGATTGGGTTTCCAAATCACCCAGATAAGGAGATATCCAAACTACCATCCATGGATCACATCAATCAAGAGACATGCTTGGATGCTTCCTCTGAATCTTTTCCTGAAGACCTTCCAAGGCAACCTTCAACTTCAGAGTTCTTTACAGAATCAGCAGGCCAGGAAACTGATCTTTTAAAGCCAAAAATGGAACCATTAGAGTCTATTCTTCCTAACTTTGTCCAGCCACCTGTGGTCAATCTTGAGGACACGCCACCGTTGCCACCTCTACCACCTATGCAATGGAGGTTAGGAAAGTTGCAACATGCTTCGCCAGCGTCACATAGAGATTTGGGAGGTGTTAGCAATGATTCATTCTTGCCAATGCAGTCACTGAAAGCTGATGAGAAAGCTCAATTTGATCTACCAGCACCACAGAGAGAGCTACTGCAGCCTCAACACCCATTTTTATCTCTCCCAGCAGAAGATATGAAGTCCCAACCTGTTTTTGGACCTTTGGTGGGCCATGTTGTGCCTCCTGCACCATTTTCGCAAGAACCAACTGATAATGATTCCAATCATCAATACAATTTTCCTGATTTAGGGGGAATGCAATTCTCAAGCCCATTCATACAACTATCGAAGGTCTCTGGTGACAGCTCTGGACACAATGACATTGATTTAGAGGGAGAGAAGGGTCTGTCTAGTTCGAAGCCAATCACAGTTCCAGGCACTGAATGCACAACATCTGGACAAGACCCTGTATTTTCTCATGGGGAAATTGTCCATCCCCAACGGTTGATGCCGGAAACAGGTTTAGAGCTTGAGGTACTTAAACAATCATTCGATAATTCAGAATTGGAACAAGCTGGACCCCTTGCCACATCTGTGACAGCACCAACCATGGAAGATGAGCAGCCTCAGCATAGTTTGCCAACAACAGAGGGAGGAAAGGTTCAGTCTACTTCAAAGCCATTAACAGTACCAGGAGCTGAATGCACAACTTCTAGACATGACACTATCCAACCTCCACAACAATTAACGAAGGAATCAGATCTAGAGCCTGAGGATCTTTGCTATTCATCAAAAAACTCAGAAAGGGAACAAGAAAAGCCTCTTGCTGCATCACTGACAGCGACAACTACAGTAGATGAGAAGCCTCAGCATAGTTTGCCAACATCAGAGGGAGAAACAGCATGTTCATCAAATACTTCTGATGTGATGCCGGACTCAGAATTTGGAAAGTCTAATGGAACAGTGAATAAGATCCCTCGTCCTAGAAATCCCCTTATTGATGCTGTCACTGCTCATGGCCAAAGCAAGTTGAAAAAGGCAAGTGAACGAATTCAACCTCAGATTGAACCAAAGGTAGACGAAAGAGATTTATTTCTGCAACAGATAAGAACCAAGGTTAGACCTCTCTTTCGTGTATTTGTCGTTTCTGCATCATCCACCTTTCATCTTTTTGGGTTCTCCATATTTCAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1643

Amino Acids

179.95

Weight (kDa)

4.52

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2946
Acc36I	ACCTGC	1 cut(s)	2488
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	2 cut(s)	15, 1799
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	1 cut(s)	826
AccI	GTMKAC	2 cut(s)	4403, 4812
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	3 cut(s)	49, 82, 910
AciI	CCGC	6 cut(s)	13, 66, 204, 824, 1820, 1863
AcoI	YGGCCR	2 cut(s)	42, 4753
AcuI	CTGAAG	9 cut(s)	1122, 1407, 1482, 2004, 2346, 2448, 2785, 3579, 3588
AcyI	GRCGYC	2 cut(s)	102, 126
AdeI	CACNNNGTG	1 cut(s)	1901
AfaI	GTAC	8 cut(s)	17, 35, 2460, 2655, 3328, 3436, 4272, 4425
AflIII	ACRYGT	4 cut(s)	1282, 1484, 2218, 2254
AhdI	GACNNNNNGTC	1 cut(s)	3181
AjnI	CCWGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
AjuI	GAANNNNNNNTTGG	2 cut(s)	3571, 3603
AleI	CACNNNNGTG	1 cut(s)	4328
AloI	GAACNNNNNNTCC	4 cut(s)	3135, 3167, 4380, 4412
Alw21I	GWGCWC	3 cut(s)	57, 418, 842
Alw26I	GTCTC	6 cut(s)	366, 912, 2128, 3222, 3527, 4093
AlwNI	CAGNNNCTG	6 cut(s)	358, 1262, 3146, 3835, 4175, 4433
Aor13HI	TCCGGA	3 cut(s)	49, 82, 910
AoxI	GGCC	9 cut(s)	42, 87, 214, 2185, 2443, 2620, 3619, 3964, 4753
ApeKI	GCWGC	8 cut(s)	161, 1439, 1981, 2519, 2696, 3892, 4357, 4562
ArsI	GACNNNNNNTTYG	6 cut(s)	2843, 2875, 4661, 4693, 4848, 4880
Asp700I	GAANNNNTTC	6 cut(s)	171, 2664, 2790, 3561, 3573, 4785
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	5 cut(s)	1610, 2266, 3953, 3964, 4313
AsuHPI	GGTGA	9 cut(s)	355, 608, 774, 1581, 1941, 2362, 3365, 3473, 4106
AsuII	TTCGAA	1 cut(s)	4151
AvaII	GGWCC	4 cut(s)	1610, 2266, 3953, 4313
AxyI	CCTNAGG	1 cut(s)	4506
BalI	TGGCCA	1 cut(s)	4755
BanI	GGYRCC	2 cut(s)	15, 1799
BanII	GRGCYC	3 cut(s)	57, 842, 995
BbsI	GAAGAC	2 cut(s)	1098, 3576
Bbv12I	GWGCWC	3 cut(s)	57, 418, 842
BbvCI	CCTCAGC	4 cut(s)	1476, 1993, 4362, 4602
BbvI	GCAGC	8 cut(s)	148, 1451, 1993, 2506, 2683, 3904, 4369, 4549
BceAI	ACGGC	3 cut(s)	52, 396, 2430
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 3972, 4006
BciT130I	CCWGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
BciVI	GTATCC	3 cut(s)	1112, 1186, 1474
BclI	TGATCA	2 cut(s)	360, 3286
BcoDI	GTCTC	6 cut(s)	366, 912, 2128, 3222, 3527, 4093
BfmI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3890, 4584
BfuAI	ACCTGC	1 cut(s)	2488
BfuI	GTATCC	3 cut(s)	1112, 1186, 1474
BglII	AGATCT	3 cut(s)	2333, 2677, 4495
BmcAI	AGTACT	2 cut(s)	2655, 3328
Bme1390I	CCNGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
Bme18I	GGWCC	4 cut(s)	1610, 2266, 3953, 4313
BmeRI	GACNNNNNGTC	1 cut(s)	3181
BmgT120I	GGNCC	5 cut(s)	1610, 2266, 3953, 3964, 4313
BmiI	GGNNCC	6 cut(s)	17, 1611, 1654, 1801, 3654, 4315
BmrFI	CCNGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
BmrI	ACTGGG	2 cut(s)	1134, 3302
BmuI	ACTGGG	2 cut(s)	1134, 3302
BoxI	GACNNNNGTC	2 cut(s)	2219, 2255
BpiI	GAAGAC	2 cut(s)	1098, 3576
BpmI	CTGGAG	5 cut(s)	607, 671, 2139, 2181, 2724
Bpu10I	CCTNAGC	5 cut(s)	1476, 1734, 1993, 4362, 4602
Bpu14I	TTCGAA	1 cut(s)	4151
BpuEI	CTTGAG	5 cut(s)	2128, 3438, 3725, 4045, 4286
Bsa29I	ATCGAT	1 cut(s)	971
BsaAI	YACGTR	1 cut(s)	1159
BsaBI	GATNNNNATC	4 cut(s)	2562, 2811, 2976, 4017
BsaHI	GRCGYC	2 cut(s)	102, 126
BsaI	GGTCTC	1 cut(s)	4093
BsaWI	WCCGGW	3 cut(s)	49, 82, 910
Bse1I	ACTGG	8 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2955, 3297
Bse21I	CCTNAGG	1 cut(s)	4506
Bse3DI	GCAATG	5 cut(s)	1873, 2004, 2383, 3749, 3814
Bse8I	GATNNNNATC	4 cut(s)	2562, 2811, 2976, 4017
BseAI	TCCGGA	3 cut(s)	49, 82, 910
BseBI	CCWGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
BseCI	ATCGAT	1 cut(s)	971
BseJI	GATNNNNATC	4 cut(s)	2562, 2811, 2976, 4017
BseMI	GCAATG	5 cut(s)	1873, 2004, 2383, 3749, 3814
BseNI	ACTGG	8 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2955, 3297
BseRI	GAGGAG	6 cut(s)	408, 411, 668, 1289, 2369, 2409
BseXI	GCAGC	8 cut(s)	148, 1451, 1993, 2506, 2683, 3904, 4369, 4549
BseYI	CCCAGC	3 cut(s)	455, 461, 3919
BsgI	GTGCAG	2 cut(s)	1367, 3966
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	3269
BshFI	GGCC	9 cut(s)	44, 89, 216, 2187, 2445, 2622, 3621, 3966, 4755
BshNI	GGYRCC	2 cut(s)	15, 1799
BshVI	ATCGAT	1 cut(s)	971
BsiEI	CGRYCG	1 cut(s)	3269
BsiHKAI	GWGCWC	3 cut(s)	57, 418, 842
BsiSI	CCGG	6 cut(s)	50, 83, 911, 3272, 4247, 4667
BslFI	GGGAC	5 cut(s)	1623, 1696, 2284, 2974, 3922
BsmAI	GTCTC	6 cut(s)	366, 912, 2128, 3222, 3527, 4093
BsmBI	CGTCTC	2 cut(s)	2128, 3222
BsmFI	GGGAC	5 cut(s)	1623, 1696, 2284, 2974, 3922
BsmI	GAATGC	6 cut(s)	413, 660, 2108, 4056, 4184, 4442
BsnI	GGCC	9 cut(s)	44, 89, 216, 2187, 2445, 2622, 3621, 3966, 4755
Bso31I	GGTCTC	1 cut(s)	4093
Bsp119I	TTCGAA	1 cut(s)	4151
Bsp1286I	GDGCHC	4 cut(s)	57, 418, 842, 995
Bsp13I	TCCGGA	3 cut(s)	49, 82, 910
Bsp19I	CCATGG	6 cut(s)	108, 1576, 2129, 3405, 3513, 4344
BspACI	CCGC	6 cut(s)	13, 66, 204, 824, 1820, 1863
BspANI	GGCC	9 cut(s)	44, 89, 216, 2187, 2445, 2622, 3621, 3966, 4755
BspDI	ATCGAT	1 cut(s)	971
BspEI	TCCGGA	3 cut(s)	49, 82, 910
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	2 cut(s)	175, 1701
BspLI	GGNNCC	6 cut(s)	17, 1611, 1654, 1801, 3654, 4315
BspMAI	CTGCAG	3 cut(s)	730, 901, 3894
BspMI	ACCTGC	1 cut(s)	2488
BspQI	GCTCTTC	1 cut(s)	1971
BspT104I	TTCGAA	1 cut(s)	4151
BspT107I	GGYRCC	2 cut(s)	15, 1799
BspTNI	GGTCTC	1 cut(s)	4093
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	5 cut(s)	1873, 2004, 2383, 3749, 3814
BsrI	ACTGG	8 cut(s)	332, 801, 1140, 1352, 1377, 1932, 2955, 3297
BssNI	GRCGYC	2 cut(s)	102, 126
BssT1I	CCWWGG	9 cut(s)	108, 1576, 2129, 2623, 3405, 3513, 3578, 4344, 4848
Bst2UI	CCWGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
Bst6I	CTCTTC	5 cut(s)	1336, 1971, 2304, 2322, 2796
BstACI	GRCGYC	2 cut(s)	102, 126
BstAPI	GCANNNNNTGC	3 cut(s)	4179, 4372, 4612
BstBAI	YACGTR	1 cut(s)	1159
BstBI	TTCGAA	1 cut(s)	4151
BstC8I	GCNNGC	4 cut(s)	2508, 3195, 3619, 3777
BstDSI	CCRYGG	9 cut(s)	108, 217, 367, 1576, 2129, 2446, 3405, 3513, 4344
BstENI	CCTNNNNNAGG	1 cut(s)	4041
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	660
BstMAI	GTCTC	6 cut(s)	366, 912, 2128, 3222, 3527, 4093
BstMCI	CGRYCG	1 cut(s)	3269
BstNI	CCWGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
BstNSI	RCATGY	9 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3540, 3770, 4641
BstPAI	GACNNNNGTC	2 cut(s)	2219, 2255
BstSCI	CCNGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
BstSFI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3890, 4584
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	8 cut(s)	148, 1451, 1993, 2506, 2683, 3904, 4369, 4549
BstV2I	GAAGAC	2 cut(s)	1098, 3576
BstX2I	RGATCY	7 cut(s)	555, 722, 2333, 2677, 4495, 4510, 4707
BstYI	RGATCY	7 cut(s)	555, 722, 2333, 2677, 4495, 4510, 4707
Bsu15I	ATCGAT	1 cut(s)	971
Bsu36I	CCTNAGG	1 cut(s)	4506
BsuI	GTATCC	3 cut(s)	1112, 1186, 1474
BsuRI	GGCC	9 cut(s)	44, 89, 216, 2187, 2445, 2622, 3621, 3966, 4755
BsuTUI	ATCGAT	1 cut(s)	971
BtgI	CCRYGG	9 cut(s)	108, 217, 367, 1576, 2129, 2446, 3405, 3513, 4344
BtsI	GCAGTG	2 cut(s)	1114, 4743
BveI	ACCTGC	1 cut(s)	2488
Cac8I	GCNNGC	4 cut(s)	2508, 3195, 3619, 3777
CaiI	CAGNNNCTG	6 cut(s)	358, 1262, 3146, 3835, 4175, 4433
CciI	TCATGA	2 cut(s)	175, 1701
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	5 cut(s)	1610, 2266, 3953, 3964, 4313
ClaI	ATCGAT	1 cut(s)	971
CseI	GACGC	7 cut(s)	91, 115, 122, 223, 2499, 2753, 3768
Csp6I	GTAC	8 cut(s)	16, 34, 2459, 2654, 3327, 3435, 4271, 4424
CviQI	GTAC	8 cut(s)	16, 34, 2459, 2654, 3327, 3435, 4271, 4424
DraI	TTTAAA	3 cut(s)	474, 502, 3639
DraIII	CACNNNGTG	1 cut(s)	1901
DriI	GACNNNNNGTC	1 cut(s)	3181
EaeI	YGGCCR	2 cut(s)	42, 4753
Eam1104I	CTCTTC	5 cut(s)	1336, 1971, 2304, 2322, 2796
Eam1105I	GACNNNNNGTC	1 cut(s)	3181
EarI	CTCTTC	5 cut(s)	1336, 1971, 2304, 2322, 2796
Ecl136II	GAGCTC	2 cut(s)	55, 840
Eco130I	CCWWGG	9 cut(s)	108, 1576, 2129, 2623, 3405, 3513, 3578, 4344, 4848
Eco147I	AGGCCT	2 cut(s)	89, 2622
Eco24I	GRGCYC	3 cut(s)	57, 842, 995
Eco31I	GGTCTC	1 cut(s)	4093
Eco32I	GATATC	2 cut(s)	3390, 3498
Eco47I	GGWCC	4 cut(s)	1610, 2266, 3953, 4313
Eco53kI	GAGCTC	2 cut(s)	55, 840
Eco57I	CTGAAG	9 cut(s)	1122, 1407, 1482, 2004, 2346, 2448, 2785, 3579, 3588
Eco81I	CCTNAGG	1 cut(s)	4506
EcoICRI	GAGCTC	2 cut(s)	55, 840
EcoNI	CCTNNNNNAGG	1 cut(s)	4041
EcoO109I	RGGNCCY	1 cut(s)	1610
EcoRI	GAATTC	1 cut(s)	4785
EcoRII	CCWGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
EcoRV	GATATC	2 cut(s)	3390, 3498
EcoT14I	CCWWGG	9 cut(s)	108, 1576, 2129, 2623, 3405, 3513, 3578, 4344, 4848
EcoT38I	GRGCYC	3 cut(s)	57, 842, 995
ErhI	CCWWGG	9 cut(s)	108, 1576, 2129, 2623, 3405, 3513, 3578, 4344, 4848
Esp3I	CGTCTC	2 cut(s)	2128, 3222
FalI	AAGNNNNNCTT	2 cut(s)	3571, 3603
FaqI	GGGAC	5 cut(s)	1623, 1696, 2284, 2974, 3922
FauI	CCCGC	1 cut(s)	831
FauNDI	CATATG	2 cut(s)	1603, 3210
FbaI	TGATCA	2 cut(s)	360, 3286
FblI	GTMKAC	2 cut(s)	4403, 4812
FriOI	GRGCYC	3 cut(s)	57, 842, 995
GlaI	GCGC	1 cut(s)	659
GsaI	CCCAGC	3 cut(s)	459, 465, 3923
GsuI	CTGGAG	5 cut(s)	607, 671, 2139, 2181, 2724
HaeIII	GGCC	9 cut(s)	44, 89, 216, 2187, 2445, 2622, 3621, 3966, 4755
HapII	CCGG	6 cut(s)	50, 83, 911, 3272, 4247, 4667
HgaI	GACGC	7 cut(s)	91, 115, 122, 223, 2499, 2753, 3768
HhaI	GCGC	1 cut(s)	660
Hin1I	GRCGYC	2 cut(s)	102, 126
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	4 cut(s)	325, 733, 1243, 2068
HindII	GTYRAC	4 cut(s)	325, 733, 1243, 2068
HindIII	AAGCTT	3 cut(s)	1464, 1924, 3252
HpaII	CCGG	6 cut(s)	50, 83, 911, 3272, 4247, 4667
HphI	GGTGA	9 cut(s)	355, 608, 774, 1581, 1941, 2362, 3365, 3473, 4106
Hpy166II	GTNNAC	9 cut(s)	325, 733, 794, 1243, 1746, 2068, 4404, 4781, 4813
Hpy8I	GTNNAC	9 cut(s)	325, 733, 794, 1243, 1746, 2068, 4404, 4781, 4813
Hpy99I	CGWCG	3 cut(s)	107, 125, 693
HpyCH4IV	ACGT	2 cut(s)	1158, 2137
HpySE526I	ACGT	2 cut(s)	1158, 2137
Hsp92I	GRCGYC	2 cut(s)	102, 126
HspAI	GCGC	1 cut(s)	658
Kpn2I	TCCGGA	3 cut(s)	49, 82, 910
KpnI	GGTACC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	360, 3286
LguI	GCTCTTC	1 cut(s)	1971
Lsp1109I	GCAGC	8 cut(s)	148, 1451, 1993, 2506, 2683, 3904, 4369, 4549
MaeII	ACGT	2 cut(s)	1158, 2137
MbiI	CCGCTC	1 cut(s)	826
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	7 cut(s)	555, 722, 2333, 2677, 4495, 4510, 4707
MhlI	GDGCHC	4 cut(s)	57, 418, 842, 995
MlsI	TGGCCA	1 cut(s)	4755
MluNI	TGGCCA	1 cut(s)	4755
MmeI	TCCRAC	6 cut(s)	262, 1068, 2456, 2946, 3165, 4489
Mox20I	TGGCCA	1 cut(s)	4755
MroI	TCCGGA	3 cut(s)	49, 82, 910
MroXI	GAANNNNTTC	6 cut(s)	171, 2664, 2790, 3561, 3573, 4785
MscI	TGGCCA	1 cut(s)	4755
MslI	CAYNNNNRTG	2 cut(s)	717, 4328
Msp20I	TGGCCA	1 cut(s)	4755
MspI	CCGG	6 cut(s)	50, 83, 911, 3272, 4247, 4667
MspR9I	CCNGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	6 cut(s)	413, 660, 2108, 4056, 4184, 4442
MvaI	CCWGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
MvnI	CGCG	1 cut(s)	234
NcoI	CCATGG	6 cut(s)	108, 1576, 2129, 3405, 3513, 4344
NdeI	CATATG	2 cut(s)	1603, 3210
NlaIV	GGNNCC	6 cut(s)	17, 1611, 1654, 1801, 3654, 4315
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	9 cut(s)	677, 1028, 1587, 3016, 3780, 3831, 4094, 4330, 4741
NspI	RCATGY	9 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3540, 3770, 4641
NspV	TTCGAA	1 cut(s)	4151
OliI	CACNNNNGTG	1 cut(s)	4328
PagI	TCATGA	2 cut(s)	175, 1701
PceI	AGGCCT	2 cut(s)	89, 2622
PciI	ACATGT	4 cut(s)	1282, 1484, 2218, 2254
PciSI	GCTCTTC	1 cut(s)	1971
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	6 cut(s)	413, 660, 2108, 4056, 4184, 4442
PdmI	GAANNNNTTC	6 cut(s)	171, 2664, 2790, 3561, 3573, 4785
PflMI	CCANNNNNTGG	1 cut(s)	1577
PfoI	TCCNGGA	1 cut(s)	2158
Ppu21I	YACGTR	1 cut(s)	1159
PpuMI	RGGWCCY	1 cut(s)	1610
PscI	ACATGT	4 cut(s)	1282, 1484, 2218, 2254
PshAI	GACNNNNGTC	2 cut(s)	2219, 2255
PsiI	TTATAA	1 cut(s)	2946
Psp124BI	GAGCTC	2 cut(s)	57, 842
Psp5II	RGGWCCY	1 cut(s)	1610
Psp6I	CCWGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
PspFI	CCCAGC	3 cut(s)	455, 461, 3919
PspGI	CCWGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
PspN4I	GGNNCC	6 cut(s)	17, 1611, 1654, 1801, 3654, 4315
PspPI	GGNCC	5 cut(s)	1610, 2266, 3953, 3964, 4313
PspPPI	RGGWCCY	1 cut(s)	1610
PsrI	GAACNNNNNNTAC	2 cut(s)	913, 945
PstI	CTGCAG	3 cut(s)	730, 901, 3894
PstNI	CAGNNNCTG	6 cut(s)	358, 1262, 3146, 3835, 4175, 4433
PsuI	RGATCY	7 cut(s)	555, 722, 2333, 2677, 4495, 4510, 4707
RsaI	GTAC	8 cut(s)	17, 35, 2460, 2655, 3328, 3436, 4272, 4425
RsaNI	GTAC	8 cut(s)	16, 34, 2459, 2654, 3327, 3435, 4271, 4424
RseI	CAYNNNNRTG	2 cut(s)	717, 4328
SacI	GAGCTC	2 cut(s)	57, 842
SapI	GCTCTTC	1 cut(s)	1971
Sau96I	GGNCC	5 cut(s)	1610, 2266, 3953, 3964, 4313
ScaI	AGTACT	2 cut(s)	2655, 3328
ScrFI	CCNGG	6 cut(s)	1730, 2160, 2993, 3623, 4170, 4428
SduI	GDGCHC	4 cut(s)	57, 418, 842, 995
SfcI	CTRYAG	7 cut(s)	726, 897, 1971, 2409, 2589, 3890, 4584
SfuI	TTCGAA	1 cut(s)	4151
SinI	GGWCC	4 cut(s)	1610, 2266, 3953, 4313
SmiMI	CAYNNNNRTG	2 cut(s)	717, 4328
SmlI	CTYRAG	5 cut(s)	2143, 3453, 3704, 4060, 4265
SmoI	CTYRAG	5 cut(s)	2143, 3453, 3704, 4060, 4265
SseBI	AGGCCT	2 cut(s)	89, 2622
SsiI	CCGC	6 cut(s)	13, 66, 204, 824, 1820, 1863
SspI	AATATT	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	57, 842
StuI	AGGCCT	2 cut(s)	89, 2622
StyD4I	CCNGG	6 cut(s)	1728, 2158, 2991, 3621, 4168, 4426
StyI	CCWWGG	9 cut(s)	108, 1576, 2129, 2623, 3405, 3513, 3578, 4344, 4848
TaiI	ACGT	2 cut(s)	1161, 2140
TaqI	TCGA	6 cut(s)	96, 971, 2603, 4082, 4151, 4287
TatI	WGTACW	2 cut(s)	2653, 3326
TauI	GCSGC	2 cut(s)	68, 1866
TseFI	GTSAC	9 cut(s)	677, 1028, 1587, 3016, 3780, 3831, 4094, 4330, 4741
TseI	GCWGC	8 cut(s)	161, 1439, 1981, 2519, 2696, 3892, 4357, 4562
Tsp45I	GTSAC	9 cut(s)	677, 1028, 1587, 3016, 3780, 3831, 4094, 4330, 4741
TspGWI	ACGGA	5 cut(s)	40, 480, 548, 1211, 3246
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	4 cut(s)	1610, 2266, 3953, 4313
XagI	CCTNNNNNAGG	1 cut(s)	4041
XbaI	TCTAGA	2 cut(s)	4448, 4498
XceI	RCATGY	9 cut(s)	471, 629, 1286, 1488, 2222, 2258, 3540, 3770, 4641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1051, 3741, 3947
XmiI	GTMKAC	2 cut(s)	4403, 4812
XmnI	GAANNNNTTC	6 cut(s)	171, 2664, 2790, 3561, 3573, 4785
ZrmI	AGTACT	2 cut(s)	2655, 3328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.