FvH4_3g28160

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004944
Physical Location & Seq
Reverse (-)
21142437 .. 21148265
5829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28160.t1

Sequence Viewer

Length: 738 bp
ATGGGAACGAACGCAGATCAGATGGAAAGAGAAGGAGAAGACGACGACGACATAGTCTGCTTAGAATCGTTTTTCATCGATGACAATTACCAGCTCACCACTTTCACATTTGGCTCTCAAGTTCTTCAACTCCTCTGCCTCCAATCTGCTTCCACTGATTTTGATCTTACAGGGCAGTTGGTGTGGCCAGGAGCAATGCTGTTGAATGATTACCTTTCTAAGAATGCAGAGATTCTGCAAGGATGCAGCATTCTTGAGTTAGGATCTGGGGTTGGTATTACTGGGATACTATGCAGCAGGTTTTGCAGACAAGTTGTTTTAACAGATCACAATGAAGAAGTGCTCAAGATCTTGAATAAAAATATAGAGCTACATGCAGCATCTGATAACCCTGAATACTGTGCTGGATTAGCAGCTGAGAAACTAGAATGGGGAAATTCTGAGCAGATCTCCCAGATATTACAAAAGTATTCAGGTGGTTTTGACTTGATTCTTGGAGCCGATATATGCTTTCAGCAGTCGAGCATTACTGCGCTTTTTGACACGGTGGAAAAACTTCTTCGAGTTAGAAAAGAAGGGAAGTGCAAATTCATACTAGCCTATGTGTCCCGTGCTAAGACCATGGATTCATTGGTCATTAGTGAAGCGACAAAACATAAGATGCAGATAATTGAATTAGCTGGGACTCGATCCTGTGTTGGAAATCTTGAAGGAGTTATCTATGAGGTGAGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

246

Amino Acids

27.06

Weight (kDa)

4.51

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 57 - 206 4e-22 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 271, 684
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 2 cut(s) 436, 587
AgsI TTSAA 5 cut(s) 128, 205, 355, 674, 710
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 4 cut(s) 94, 370, 416, 680
AluI AGCT 4 cut(s) 94, 370, 416, 680
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 2 cut(s) 271, 684
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 246, 294, 377, 413
ApoI RAATTY 2 cut(s) 436, 587
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 88
BalI TGGCCA 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 258, 306, 389, 425
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 279
BfaI CTAG 2 cut(s) 425, 596
BfmI CTRYAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 288
BfuI GTATCC 1 cut(s) 279
BglII AGATCT 2 cut(s) 348, 447
BisI GCNGC 4 cut(s) 247, 295, 378, 414
BlsI GCNGC 4 cut(s) 248, 296, 379, 415
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 233, 389, 651
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpuEI CTTGAG 3 cut(s) 102, 275, 329
Bsa29I ATCGAT 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 1 cut(s) 248
BseJI GATNNNNATC 1 cut(s) 162
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 408, 432
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 4 cut(s) 258, 306, 389, 425
BseYI CCCAGC 1 cut(s) 680
BshFI GGCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 2 cut(s) 592, 697
BsmFI GGGAC 2 cut(s) 592, 697
BsmI GAATGC 2 cut(s) 229, 249
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 409, 433
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 271, 684
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 401, 547
BstAPI GCANNNNNTGC 1 cut(s) 303
BstDEI CTNAG 5 cut(s) 61, 219, 417, 441, 615
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 7 cut(s) 19, 166, 266, 328, 351, 450, 692
BstMBI GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
BstMWI GCNNNNNNNGC 2 cut(s) 303, 410
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 734
BstV1I GCAGC 4 cut(s) 258, 306, 389, 425
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 263, 348, 447
BstYI RGATCY 3 cut(s) 263, 348, 447
Bsu15I ATCGAT 1 cut(s) 78
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 535
ClaI ATCGAT 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 2 cut(s) 374, 622
CviJI RGCY 9 cut(s) 94, 114, 187, 370, 416, 500, 599, 680, 732
CviKI_1 RGCY 9 cut(s) 94, 114, 187, 370, 416, 500, 599, 680, 732
DdeI CTNAG 5 cut(s) 61, 219, 417, 441, 615
DpnI GATC 7 cut(s) 18, 165, 265, 327, 350, 449, 691
DpnII GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 2 cut(s) 377, 625
FaqI GGGAC 2 cut(s) 592, 697
FatI CATG 2 cut(s) 373, 621
Fnu4HI GCNGC 4 cut(s) 247, 295, 378, 414
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 4 cut(s) 247, 295, 378, 414
FspBI CTAG 2 cut(s) 425, 596
GlaI GCGC 1 cut(s) 534
GluI GCNGC 4 cut(s) 247, 295, 378, 414
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 1 cut(s) 535
Hin1II CATG 2 cut(s) 377, 625
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HinfI GANTC 5 cut(s) 65, 232, 490, 626, 685
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 21, 385, 442
Hpy188III TCNNGA 4 cut(s) 254, 346, 352, 707
Hpy99I CGWCG 2 cut(s) 47, 50
HpyAV CCTTC 3 cut(s) 26, 569, 704
HpyCH4III ACNGT 2 cut(s) 401, 547
HpyCH4V TGCA 8 cut(s) 227, 238, 246, 294, 306, 377, 585, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 410
HpyF3I CTNAG 5 cut(s) 61, 219, 417, 441, 615
Hsp92II CATG 2 cut(s) 377, 625
HspAI GCGC 1 cut(s) 533
Kzo9I GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
LmnI GCTCC 2 cut(s) 191, 497
Lsp1109I GCAGC 4 cut(s) 258, 306, 389, 425
LweI GCATC 3 cut(s) 233, 389, 651
MaeI CTAG 2 cut(s) 425, 596
MalI GATC 7 cut(s) 18, 165, 265, 327, 350, 449, 691
MboI GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
MboII GAAGA 4 cut(s) 50, 116, 347, 551
MflI RGATCY 3 cut(s) 263, 348, 447
MhlI GDGCHC 1 cut(s) 345
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 5 cut(s) 85, 436, 587, 669, 674
MluNI TGGCCA 1 cut(s) 187
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 3 cut(s) 143, 149, 718
Mox20I TGGCCA 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 555
MscI TGGCCA 1 cut(s) 187
MseI TTAA 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 2 cut(s) 229, 249
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 303, 410
NcoI CCATGG 1 cut(s) 621
NdeII GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
NlaIII CATG 2 cut(s) 377, 625
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 1 cut(s) 377
PctI GAATGC 2 cut(s) 229, 249
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 4 cut(s) 65, 232, 490, 626
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 4 cut(s) 248, 296, 379, 415
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 3 cut(s) 263, 348, 447
PsyI GACNNNGTC 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 4 cut(s) 247, 295, 378, 414
Sau3AI GATC 7 cut(s) 16, 163, 263, 325, 348, 447, 689
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 96, 216, 302, 372, 418, 478, 682, 729
SfaNI GCATC 3 cut(s) 233, 389, 651
SfcI CTRYAG 1 cut(s) 734
SmlI CTYRAG 3 cut(s) 117, 254, 344
SmoI CTYRAG 3 cut(s) 117, 254, 344
Sse9I AATT 5 cut(s) 85, 436, 587, 669, 674
SspMI CTAG 2 cut(s) 425, 596
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 401, 547
TaqI TCGA 4 cut(s) 78, 521, 562, 688
TasI AATT 5 cut(s) 85, 436, 587, 669, 674
TfiI GAWTC 4 cut(s) 65, 232, 490, 626
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 1 cut(s) 160
TseI GCWGC 4 cut(s) 246, 294, 377, 413
TspDTI ATGAA 4 cut(s) 64, 348, 580, 618
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 53
XapI RAATTY 2 cut(s) 436, 587
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 2 cut(s) 425, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.