RchiOBHm_Chr5g0050251

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004944
Physical Location & Seq
Reverse (-)
50229132 .. 50235020
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32785

Sequence Viewer

Length: 339 bp
ATGGAAAGAGAAGGAGAAGACGACGACATAGTTTGCCTAGACGAATCGTTTTTCATCGATGACAATTACCAGCTGACGACTTTCACTTTTGGGTCTCAAGTTCTTCAACTCCTTTGCCTCCAATCTGCTTCCACTGATTTTGATCTTACAGGACAATTGGTGTGGCCAGGGGCAATGCTGTTGAATGATTACCTTTCTAAGAATGCAGAGATCCTGCAAGGATGCACTGTTATTGAGTTAGGGTCTGGGGTTGGTATTACTGGAATACTATGCAGCAGATTTTGCAGTCAAGTTGTTTTAACAGACCACAATGAAGAAGTGCTCAAGGCAAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

4.05

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 50 - 105 2.5e-09 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 164
AgsI TTSAA 2 cut(s) 107, 184
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 205
AoxI GGCC 2 cut(s) 164, 332
ApeKI GCWGC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 81, 308
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 141
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 2 cut(s) 166, 334
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 166, 334
Bso31I GGTCTC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 142, 210
BspANI GGCC 2 cut(s) 166, 334
BspDI ATCGAT 1 cut(s) 57
BspPI GGATC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 142, 210
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 2 cut(s) 145, 213
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 142, 210
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 2 cut(s) 166, 334
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 132, 225
ClaI ATCGAT 1 cut(s) 57
CspCI CAANNNNNGTGG 4 cut(s) 121, 143, 156, 178
CviAII CATG 1 cut(s) 336
CviJI RGCY 3 cut(s) 73, 166, 334
CviKI_1 RGCY 3 cut(s) 73, 166, 334
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 144, 212
DpnII GATC 2 cut(s) 142, 210
EaeI YGGCCR 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 339
FaiI YATR 3 cut(s) 29, 271, 337
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 166, 334
Hin1II CATG 1 cut(s) 339
HinfI GANTC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 5 cut(s) 206, 217, 225, 273, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 2 cut(s) 142, 210
LpnPI CCDG 7 cut(s) 83, 135, 153, 180, 227, 231, 246
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 38
MalI GATC 2 cut(s) 144, 212
MboI GATC 2 cut(s) 142, 210
MboII GAAGA 3 cut(s) 29, 95, 326
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 2 cut(s) 64, 155
MluNI TGGCCA 1 cut(s) 166
MnlI CCTC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeII GATC 2 cut(s) 142, 210
NlaIII CATG 1 cut(s) 339
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 142, 210
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 324
SetI ASST 2 cut(s) 75, 195
SfaNI GCATC 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 96, 323
SmoI CTYRAG 2 cut(s) 96, 323
Sse9I AATT 2 cut(s) 64, 155
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 64, 155
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 2 cut(s) 139, 232
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 43, 327
TspRI CASTG 2 cut(s) 139, 232
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.