Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004944

Physical Location & Seq

Genomic Coordinates Forward (+)

18760668 .. 18767548

Gene Structure 6881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G260400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCGGCAAATGAAAGGAGAAGGAGAAGAAGAGGACATAGTTTGCTTAGATGAATCTTTCTTCATCGATGACAATTACCAGCTGACCACTTTCACATTTGGGTCTCAAGTTATTGAGCTGCTTTGCCTCCAGTCTGCTTCAACTGATTTTGATCTGACTGGGCAACTGGTTTGGCCGGGGGCAATGCTGTTGAATGATTACCTTTCAAAGAATGCAGAGCTTCTGCAAGGATGCACTGTTCTGGAATTAGGCTCTGGGGTTGGTATTACTGGAATACTTTGCAGCAGATTTTGTAGCAAAGTTGTATTAACAGATCATAATGAGGAAGTTCTCAAGATCCTGAAGAAAAATATAGAGCTGCATGCATCTTCTGAGAACTCTAAATGCTGTTCTGGATTAGTAGCTGAGAAACTAGAATGGGGAAATTCTGAGCAGATCGGCCACATTTTACAAACATATTCAGATGGATTTGATTTGATTCTTGGAGCTGACATATGCTTTCAACAGTCAAGCATTTGTTTGCTTTTCGATACTGTGGAAAAACTTCTTCGAAATAGAAGGGAAGGACAGTGCAAATTCATACTAGCCTACGTATCCCGAACTAAGATCATGGATTCGTTGGTCATCAGTGAAGCTGTGCGGTGTGGGATGCAGATAAATGAATTAGTTGGGACTCGATCTGTCGTGGGAAATCTCGAAGGAGTCATCTTTGAGGTGACCCTTAAAAAACAGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

247

Amino Acids

27.34

Weight (kDa)

4.64

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26810 AT2G26810 AT2G26810 AT2G26810 AT2G26810 AT2G26810 AT2G26810
fragaria_vesca	FvH4_3g28160 FvH4_3g28160 FvH4_3g28160 FvH4_3g28160 FvH4_3g28160 FvH4_3g28160
malus_domestica	MD00G1134600.v1.1
prunus_persica	Prupe.4G260400_v2.0.a1 Prupe.4G260400_v2.0.a1
pyrus_communis	pycom12561g00240
rosa_chinensis	RchiOBHm_Chr5g0050231 RchiOBHm_Chr5g0050251
rosa_laevigata	RLG00000034691
rosa_multiflora	Rmu_sc0010153.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030770
rosa_rugosa	Rorug05G0240400.1 Rorug05G0259700 Rorug05G0259700
rosa_samantha	Rh5AG331200 Rh5BG341800 Rh5CG368700 Rh5DG354600
rosa_wichuraiana	Rw5G031300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 640
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	2 cut(s)	173, 439
AcsI	RAATTY	2 cut(s)	424, 575
AcuI	CTGAAG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	141, 193, 207, 503
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	7 cut(s)	82, 118, 220, 358, 404, 488, 635
AluI	AGCT	7 cut(s)	82, 118, 220, 358, 404, 488, 635
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	173, 439
ApeKI	GCWGC	3 cut(s)	118, 282, 358
ApoI	RAATTY	2 cut(s)	424, 575
Asp700I	GAANNNNTTC	1 cut(s)	543
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	727
AsuII	TTCGAA	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	105, 294, 345
BccI	CCATC	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	413, 584
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	4 cut(s)	5, 119, 283, 359
BlsI	GCNGC	4 cut(s)	6, 120, 284, 360
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	221, 374, 639
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	2 cut(s)	90, 317
BpuMI	CCSGG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	130, 163, 171, 274
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	3 cut(s)	236, 654, 739
BseJI	GATNNNNATC	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	363, 396, 420
BseNI	ACTGG	4 cut(s)	130, 163, 171, 274
BseXI	GCAGC	3 cut(s)	105, 294, 345
BshFI	GGCC	2 cut(s)	175, 441
BshVI	ATCGAT	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	685
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	175, 441
Bso31I	GGTCTC	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
BspACI	CCGC	2 cut(s)	4, 640
BspANI	GGCC	2 cut(s)	175, 441
BspCNI	CTCAG	3 cut(s)	364, 397, 421
BspDI	ATCGAT	1 cut(s)	66
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	4 cut(s)	130, 163, 171, 274
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
Bst4CI	ACNGT	4 cut(s)	238, 507, 535, 570
Bst6I	CTCTTC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	5 cut(s)	46, 372, 405, 429, 603
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	3 cut(s)	236, 654, 739
BstKTI	GATC	6 cut(s)	154, 316, 339, 438, 609, 680
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
BstNSI	RCATGY	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	105, 294, 345
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	175, 441
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	236, 654, 739
BtsIMutI	CAGTG	3 cut(s)	234, 575, 634
Cac8I	GCNNGC	1 cut(s)	363
ClaI	ATCGAT	1 cut(s)	66
CviAII	CATG	2 cut(s)	362, 610
DdeI	CTNAG	5 cut(s)	46, 372, 405, 429, 603
DpnI	GATC	6 cut(s)	153, 315, 338, 437, 608, 679
DpnII	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
EaeI	YGGCCR	2 cut(s)	173, 439
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco105I	TACGTA	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	715
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	2 cut(s)	365, 613
FaiI	YATR	9 cut(s)	38, 318, 353, 363, 457, 494, 496, 581, 611
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	2 cut(s)	361, 609
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	4 cut(s)	5, 119, 283, 359
FokI	GGATG	2 cut(s)	243, 661
Fsp4HI	GCNGC	4 cut(s)	5, 119, 283, 359
FspBI	CTAG	2 cut(s)	413, 584
GluI	GCNGC	4 cut(s)	5, 119, 283, 359
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	175, 441
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	2 cut(s)	365, 613
HinfI	GANTC	5 cut(s)	53, 478, 614, 673, 702
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	156, 373, 430, 463
Hpy188III	TCNNGA	6 cut(s)	242, 334, 340, 393, 597, 695
HpyAV	CCTTC	4 cut(s)	14, 552, 557, 692
HpyCH4III	ACNGT	4 cut(s)	238, 507, 535, 570
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	8 cut(s)	215, 226, 234, 282, 361, 365, 573, 652
HpyF3I	CTNAG	5 cut(s)	46, 372, 405, 429, 603
HpySE526I	ACGT	1 cut(s)	591
Hsp92II	CATG	2 cut(s)	365, 613
Kzo9I	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	3 cut(s)	105, 294, 345
LweI	GCATC	3 cut(s)	221, 374, 639
MaeI	CTAG	2 cut(s)	413, 584
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	6 cut(s)	153, 315, 338, 437, 608, 679
MboI	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
MboII	GAAGA	6 cut(s)	38, 41, 52, 355, 360, 539
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	5 cut(s)	73, 245, 424, 575, 662
MlyI	GAGTC	2 cut(s)	667, 711
MnlI	CCTC	4 cut(s)	25, 137, 316, 706
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	2 cut(s)	308, 723
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
NlaIII	CATG	2 cut(s)	365, 613
NmuCI	GTSAC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	53, 478, 614
PkrI	GCNGC	4 cut(s)	6, 120, 284, 360
PleI	GAGTC	2 cut(s)	667, 710
PpsI	GAGTC	2 cut(s)	667, 710
Ppu21I	YACGTR	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	308, 723
SatI	GCNGC	4 cut(s)	5, 119, 283, 359
Sau3AI	GATC	6 cut(s)	151, 313, 336, 435, 606, 677
SchI	GAGTC	2 cut(s)	667, 711
ScrFI	CCNGG	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	221, 374, 639
SfuI	TTCGAA	1 cut(s)	550
SmlI	CTYRAG	2 cut(s)	105, 332
SmoI	CTYRAG	2 cut(s)	105, 332
SnaBI	TACGTA	1 cut(s)	592
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	5 cut(s)	73, 245, 424, 575, 662
SsiI	CCGC	2 cut(s)	4, 640
SspMI	CTAG	2 cut(s)	413, 584
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	4 cut(s)	238, 507, 535, 570
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	5 cut(s)	66, 528, 550, 676, 696
TasI	AATT	5 cut(s)	73, 245, 424, 575, 662
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	53, 478, 614
Tru1I	TTAA	2 cut(s)	308, 723
Tru9I	TTAA	2 cut(s)	308, 723
TscAI	CASTG	3 cut(s)	241, 575, 634
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	3 cut(s)	118, 282, 358
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	26, 52, 66, 568, 675
TspRI	CASTG	3 cut(s)	241, 575, 634
XapI	RAATTY	2 cut(s)	424, 575
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	413, 584
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.