MD00G1134600.v1.1

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0004944
Physical Location & Seq
Forward (+)
29144754 .. 29146768
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1134600.v1.1.491

Sequence Viewer

Length: 522 bp
ATGGAAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGACGACATAGTTTGCTTGGACGAATCTTTCTTCATCGATGACAATTACCAGCTGACCACCTTCATATTTGGATCTCAAGTTATCGAGCTTCTTTGCCTCCACTCTGCTTCTACCGATTTTGATCTGACAGGGCAATTGGTATGGCCTGGAGCAATGCTGTTGAACGATTACCTTTCAAACAATGCGGTGCTTCTGCAAGGATGCACTGTTTTGGAATTAGGCTCTGGGGTCGGTATTACTGGAATACTGTGCAGCAGGTTCTGCAGCAAAGTTGTATTAACAGACCATAATGATGAAGTTCTCAAGATCCTGAAGAAAAATATAGATCTGCATGCATCTTCCGAGAAGTCTAACTTTTGTTCTGAATTAGTCGCTGAGAAACTCGAATGGGGAAATTCGGAGCAGATCTGCCACATTTTGCAGACGTATACAAATGGATTTGATTTGATTCTTGGAGCTGACATATATATCCACAATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

174

Amino Acids

18.69

Weight (kDa)

4.24

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 56 - 168 1.8e-16 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 467
AciI CCGC 1 cut(s) 224
AclWI GGATC 2 cut(s) 118, 340
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 202, 216
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 3 cut(s) 91, 127, 497
AluI AGCT 3 cut(s) 91, 127, 497
AlwI GGATC 2 cut(s) 118, 340
AlwNI CAGNNNCTG 1 cut(s) 300
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 291, 303
ApoI RAATTY 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 303, 315
BciT130I CCWGG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 285
BglII AGATCT 2 cut(s) 364, 444
BisI GCNGC 2 cut(s) 292, 304
BlsI GCNGC 2 cut(s) 293, 305
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 230, 383
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 99, 326
Bsa29I ATCGAT 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 75
BseGI GGATG 1 cut(s) 245
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 7 cut(s) 30, 33, 36, 39, 42, 45, 48
BseXI GCAGC 2 cut(s) 303, 315
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 75
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 5 cut(s) 110, 160, 345, 364, 444
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 2 cut(s) 118, 340
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 283
BssMI GATC 5 cut(s) 110, 160, 345, 364, 444
BssNAI GTATAC 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 247, 288
BstAPI GCANNNNNTGC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 5 cut(s) 113, 163, 348, 367, 447
BstMBI GATC 5 cut(s) 110, 160, 345, 364, 444
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 303, 315
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 4 cut(s) 110, 345, 364, 444
BstYI RGATCY 4 cut(s) 110, 345, 364, 444
BstZ17I GTATAC 1 cut(s) 468
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 75
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 75
CviAII CATG 1 cut(s) 371
CviJI RGCY 5 cut(s) 91, 127, 184, 261, 497
CviKI_1 RGCY 5 cut(s) 91, 127, 184, 261, 497
DdeI CTNAG 1 cut(s) 414
DpnI GATC 5 cut(s) 112, 162, 347, 366, 446
DpnII GATC 5 cut(s) 110, 160, 345, 364, 444
Eco57I CTGAAG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 1 cut(s) 374
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 1 cut(s) 370
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 2 cut(s) 292, 304
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 292, 304
GluI GCNGC 2 cut(s) 292, 304
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 1 cut(s) 374
HinfI GANTC 2 cut(s) 62, 487
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 165, 382, 403, 439
Hpy188III TCNNGA 2 cut(s) 343, 349
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 247, 288
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 7 cut(s) 235, 243, 291, 303, 370, 374, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 5 cut(s) 110, 160, 345, 364, 444
LmnI GCTCC 3 cut(s) 188, 439, 494
LpnPI CCDG 8 cut(s) 101, 153, 171, 198, 249, 264, 280, 362
Lsp1109I GCAGC 2 cut(s) 303, 315
LweI GCATC 2 cut(s) 230, 383
MaeII ACGT 1 cut(s) 464
MalI GATC 5 cut(s) 112, 162, 347, 366, 446
MboI GATC 5 cut(s) 110, 160, 345, 364, 444
MboII GAAGA 4 cut(s) 50, 61, 364, 369
MfeI CAATTG 2 cut(s) 173, 514
MflI RGATCY 4 cut(s) 110, 345, 364, 444
MluCI AATT 6 cut(s) 82, 173, 254, 404, 433, 514
MnlI CCTC 8 cut(s) 8, 11, 14, 17, 20, 23, 26, 146
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 317, 520
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 2 cut(s) 173, 514
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 5 cut(s) 110, 160, 345, 364, 444
NlaIII CATG 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 62, 487
PkrI GCNGC 2 cut(s) 293, 305
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PstI CTGCAG 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 300
PsuI RGATCY 4 cut(s) 110, 345, 364, 444
PvuII CAGCTG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 317, 520
SatI GCNGC 2 cut(s) 292, 304
Sau3AI GATC 5 cut(s) 110, 160, 345, 364, 444
ScrFI CCNGG 1 cut(s) 186
SetI ASST 8 cut(s) 13, 93, 101, 129, 213, 299, 467, 499
SfaNI GCATC 2 cut(s) 230, 383
SfcI CTRYAG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 114, 341
SmoI CTYRAG 2 cut(s) 114, 341
SphI GCATGC 1 cut(s) 374
Sse9I AATT 6 cut(s) 82, 173, 254, 404, 433, 514
SsiI CCGC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 247, 288
TaiI ACGT 1 cut(s) 467
TaqI TCGA 3 cut(s) 75, 123, 423
TasI AATT 6 cut(s) 82, 173, 254, 404, 433, 514
TfiI GAWTC 2 cut(s) 62, 487
Tru1I TTAA 2 cut(s) 317, 520
Tru9I TTAA 2 cut(s) 317, 520
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 291, 303
TspDTI ATGAA 3 cut(s) 61, 91, 348
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.