Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Forward (+)

22209832 .. 22210979

Gene Structure 1148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCATGTCCAACTTCCTCTCCCCCACAACCCCTCTCCGCCTCTCCCACCACCCAACCCTCCTCCACTCCTCCCCATTCTCTCTCCCCCACCACTCCCTTCTCTCACTCTCCCACCCCATCAAACCCAGAAGACTCCTCCTCCTCACCCCCCATTCCAAAGGCGGTGACGACTCTGTCGACGCCCCCGACCGCCTCATCGCCGCCTTCTGTTATTTCTACCCCTTCTTCGACGGCATCCAGTACGGTAAATACGTCATCACCCAATTCACTGCCATCCAGGCTCTGATTAACCCCCTGGTTCCTGCTATAAGGGTCTTCAAGAGCTTCCCCTTTAATGGGTTCTTGGTATTTTTAACCCTCTACTTTGGTGTTGTTAGGAACCAGAACTTTAGTAGGTATGTGAGGTTCAATACCATGCAAGTGATTGTGCTTGATGTGCTGCTCATCTTTCCTGATCTTCTGGAGAGGAGCTTCAATCCCAGAGATGGGGTGGGGTTGGATTTGCTCATGAGCTTGGATAGTACTGTGTTTCTTTTTCTTTTGGTGTCTTTGGTTTATGGGTCTGCTTCTTGCTTGCTGGGTCAGGTGCCCAGGTTGCCCATTGTGGCTGAAGCTGCTGAAAGGCAAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

213

Amino Acids

23.81

Weight (kDa)

9.0

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	65 - 207	2.4e-50	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	4 cut(s)	40, 165, 193, 204
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	245, 526
AfiI	CCNNNNNNNGG	4 cut(s)	338, 339, 488, 489
AgsI	TTSAA	3 cut(s)	322, 412, 478
AjnI	CCWGG	3 cut(s)	279, 297, 593
AluBI	AGCT	4 cut(s)	327, 474, 516, 617
AluI	AGCT	4 cut(s)	327, 474, 516, 617
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	442, 617
AsuHPI	GGTGA	3 cut(s)	139, 179, 253
BaeGI	GKGCMC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	139, 310
BbvI	GCAGC	2 cut(s)	429, 604
BccI	CCATC	3 cut(s)	128, 284, 482
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	3 cut(s)	281, 299, 595
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	204, 443, 618
BlsI	GCNGC	3 cut(s)	205, 444, 619
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	3 cut(s)	281, 299, 595
BmiI	GGNNCC	3 cut(s)	303, 383, 591
BmrFI	CCNGG	3 cut(s)	281, 299, 595
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	139, 310
BpmI	CTGGAG	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	297, 593
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 126, 156
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 339, 488, 489
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	3 cut(s)	281, 299, 595
BseDI	CCNNGG	2 cut(s)	297, 593
BseGI	GGATG	2 cut(s)	237, 276
BseLI	CCNNNNNNNGG	4 cut(s)	338, 339, 488, 489
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	6 cut(s)	53, 61, 128, 131, 134, 484
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	429, 604
BseYI	CCCAGC	1 cut(s)	580
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	338, 339, 488, 489
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	4 cut(s)	40, 165, 193, 204
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	303, 383, 591
BspT107I	GGYRCC	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	297, 593
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	281, 299, 595
Bst4CI	ACNGT	2 cut(s)	248, 529
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	237, 276
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 439, 598, 617
BstNI	CCWGG	3 cut(s)	281, 299, 595
BstSCI	CCNGG	3 cut(s)	279, 297, 593
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	429, 604
BstV2I	GAAGAC	2 cut(s)	139, 310
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	237, 276
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	578
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	510
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	244, 525
CviAII	CATG	3 cut(s)	7, 418, 511
CviJI	RGCY	7 cut(s)	5, 284, 327, 474, 516, 611, 617
CviKI_1	RGCY	7 cut(s)	5, 284, 327, 474, 516, 611, 617
CviQI	GTAC	2 cut(s)	244, 525
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	633
EcoRII	CCWGG	3 cut(s)	279, 297, 593
FaeI	CATG	3 cut(s)	10, 421, 514
FaiI	YATR	6 cut(s)	8, 311, 402, 419, 512, 561
FatI	CATG	3 cut(s)	6, 417, 510
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	204, 443, 618
FokI	GGATG	2 cut(s)	224, 263
Fsp4HI	GCNGC	3 cut(s)	204, 443, 618
GluI	GCNGC	3 cut(s)	204, 443, 618
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	10, 421, 514
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	135, 173
HphI	GGTGA	3 cut(s)	139, 179, 253
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	4 cut(s)	322, 455, 464, 511
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	185, 236
HpyAV	CCTTC	3 cut(s)	110, 217, 235
HpyCH4III	ACNGT	2 cut(s)	248, 529
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 439, 598, 617
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	10, 421, 514
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	2 cut(s)	429, 604
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	144, 220, 310, 452
MhlI	GDGCHC	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	129, 167
MmeI	TCCRAC	2 cut(s)	36, 480
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	291, 336, 356
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	281, 299, 595
MvaI	CCWGG	3 cut(s)	281, 299, 595
MwoI	GCNNNNNNNGC	4 cut(s)	281, 439, 598, 617
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	10, 421, 514
NlaIV	GGNNCC	3 cut(s)	303, 383, 591
NmuCI	GTSAC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 186, 252
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	205, 444, 619
PleI	GAGTC	2 cut(s)	129, 167
PpsI	GAGTC	2 cut(s)	129, 167
Psp6I	CCWGG	3 cut(s)	279, 297, 593
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	3 cut(s)	279, 297, 593
PspN4I	GGNNCC	3 cut(s)	303, 383, 591
PsrI	GAACNNNNNNTAC	2 cut(s)	392, 424
PstNI	CAGNNNCTG	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	245, 526
RsaNI	GTAC	2 cut(s)	244, 525
RseI	CAYNNNNRTG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	291, 336, 356
SatI	GCNGC	3 cut(s)	204, 443, 618
Sau3AI	GATC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	129, 167
ScrFI	CCNGG	3 cut(s)	281, 299, 595
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	9 cut(s)	258, 329, 401, 410, 476, 518, 591, 599, 619
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	4 cut(s)	40, 165, 193, 204
StyD4I	CCNGG	3 cut(s)	279, 297, 593
TaaI	ACNGT	2 cut(s)	248, 529
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	180, 231
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	3 cut(s)	291, 336, 356
Tru9I	TTAA	3 cut(s)	291, 336, 356
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	442, 617
Tsp45I	GTSAC	1 cut(s)	167
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.