Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Forward (+)

55823281 .. 55823817

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCAAGTCATTGTGCTTGATGTGCTGCTTATTTTTCCTGATCTTCTGGAGAGGAGCTTCAATCCCAGAGATGGGTTGGGATTGGATGTGCTGATGAGCTTGGATAGTACCGTCTTCCTTTTCCTCTTGGTGTGTTTGATTTATGCGTCTTCTTCTTGCTTGTTGGGTCAGGTCCCCAGATTGCCCATTGTAGCTGAAGCTGCTGATAGGCAGGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

73

Amino Acids

8.03

Weight (kDa)

4.19

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	1 - 68	1e-20	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	71, 72
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	4 cut(s)	57, 99, 194, 200
AluI	AGCT	4 cut(s)	57, 99, 194, 200
ApeKI	GCWGC	2 cut(s)	25, 200
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	106, 141
BbvI	GCAGC	2 cut(s)	12, 187
BccI	CCATC	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	26, 201
BlsI	GCNGC	2 cut(s)	27, 202
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	174, 216
BpiI	GAAGAC	2 cut(s)	106, 141
BpmI	CTGGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 72
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	71, 72
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	12, 187
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	71, 72
BsmFI	GGGAC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	174, 216
BspMI	ACCTGC	1 cut(s)	202
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 200
BstV1I	GCAGC	2 cut(s)	12, 187
BstV2I	GAAGAC	2 cut(s)	106, 141
BtsCI	GGATG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	108
CviJI	RGCY	4 cut(s)	57, 99, 194, 200
CviKI_1	RGCY	4 cut(s)	57, 99, 194, 200
CviQI	GTAC	1 cut(s)	108
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	172
FaiI	YATR	1 cut(s)	144
FaqI	GGGAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	26, 201
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	26, 201
GluI	GCNGC	2 cut(s)	26, 201
GsuI	CTGGAG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	38, 47
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 200
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	32, 51, 79, 155, 190, 197
Lsp1109I	GCAGC	2 cut(s)	12, 187
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	35, 106, 141, 144
MnlI	CCTC	2 cut(s)	45, 134
MwoI	GCNNNNNNNGC	2 cut(s)	22, 200
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	174, 216
PkrI	GCNGC	2 cut(s)	27, 202
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	174, 216
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SatI	GCNGC	2 cut(s)	26, 201
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	172
SetI	ASST	6 cut(s)	59, 101, 174, 196, 202, 216
SinI	GGWCC	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	112
TseI	GCWGC	2 cut(s)	25, 200
VpaK11BI	GGWCC	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.