Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Reverse (-)

52568718 .. 52569464

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32885

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCCATAAACGAGATTAACTCCTCCCCTTCACCCAAAAAACCCGGACTTCCATTTCTCTGTAGAAATGGCCATGTCCAACTTCCTCTCCCCCACAACCCCTTTTCGCCTCTCCCACAGACCCTTTATTCACTCTCCCCATTCTCTCTAACCCACCATTCTCTTCTCACTCTCACCCACCTCTCCACCAACCCAGTCAAACCCAGAAGACTCCTGACCACCCAATCCAAGGGTGACGACTCAGTCGACGTCCCCGACCGCTTAATCGCCGCCGTCTGTTACTTCTACCCCTTCTTCGACGGCATACAATACGGTAAATATGTGATCACTCAGTTCACCGCCATTCAAGCTCTGATTAACCCCTTGGTGCCGGCTATACGGGTCTTCAAGAGCTTCCCCTTTAATGGGTTCTTGTATGTGAGGTTCAATACCATGCAAGTCATTGTGCTTGATGTGCTGCTTATTTTTCCTGATCTTCTGGAGAGGAGCTTCAATCCCAGAGATGGGTTGGGATTGGATGTGCTGATGAGCTTGGATAGTACCGTCTTCCTTTTCCTCTTGGTGTGTTTGATTTATGCGTCTTCTTCTTGCTTGTTGGGTCAGGTCCCAGATTGCCCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

207

Amino Acids

23.14

Weight (kDa)

7.67

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	87 - 139	3.1e-12	Chloroplast import apparatus Tic20-like
TIC20	PF16166	138 - 207	2.4e-20	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	3 cut(s)	259, 270, 339
AcoI	YGGCCR	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	5 cut(s)	229, 404, 405, 503, 504
AgsI	TTSAA	4 cut(s)	347, 388, 427, 493
AluBI	AGCT	4 cut(s)	350, 393, 489, 531
AluI	AGCT	4 cut(s)	350, 393, 489, 531
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	604
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	4 cut(s)	24, 166, 245, 328
AvaII	GGWCC	1 cut(s)	604
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	4 cut(s)	214, 376, 538, 573
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	2 cut(s)	257, 316
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	2 cut(s)	270, 458
BlsI	GCNGC	2 cut(s)	271, 459
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	2 cut(s)	369, 606
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	4 cut(s)	214, 376, 538, 573
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	228, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	5 cut(s)	229, 404, 405, 503, 504
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	228, 363
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	5 cut(s)	229, 404, 405, 503, 504
BseMII	CTCAG	2 cut(s)	255, 344
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	13, 499
BseXI	GCAGC	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	45, 371
BslFI	GGGAC	2 cut(s)	236, 590
BslI	CCNNNNNNNGG	5 cut(s)	229, 404, 405, 503, 504
BsmFI	GGGAC	2 cut(s)	236, 590
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	324, 472
BspACI	CCGC	3 cut(s)	259, 270, 339
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	254, 343
BspLI	GGNNCC	2 cut(s)	369, 606
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	228, 363
BssMI	GATC	2 cut(s)	324, 472
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	228, 363
Bst4CI	ACNGT	2 cut(s)	314, 544
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	241, 330
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	2 cut(s)	327, 475
BstMBI	GATC	2 cut(s)	324, 472
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 454
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	4 cut(s)	214, 376, 538, 573
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	604
CseI	GACGC	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	2 cut(s)	74, 433
CviJI	RGCY	6 cut(s)	72, 350, 374, 393, 489, 531
CviKI_1	RGCY	6 cut(s)	72, 350, 374, 393, 489, 531
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	241, 330
DpnI	GATC	2 cut(s)	326, 474
DpnII	GATC	2 cut(s)	324, 472
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	228, 363
Eco47I	GGWCC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	228, 363
ErhI	CCWWGG	2 cut(s)	228, 363
FaeI	CATG	2 cut(s)	77, 436
FaiI	YATR	8 cut(s)	8, 75, 305, 321, 377, 417, 434, 576
FaqI	GGGAC	2 cut(s)	236, 590
FatI	CATG	2 cut(s)	73, 432
FbaI	TGATCA	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	270, 458
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	270, 458
GluI	GCNGC	2 cut(s)	270, 458
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	45, 371
HgaI	GACGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	77, 436
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	210, 239
HpaII	CCGG	2 cut(s)	45, 371
HphI	GGTGA	4 cut(s)	24, 166, 245, 328
Hpy166II	GTNNAC	2 cut(s)	247, 336
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	4 cut(s)	214, 388, 470, 479
Hpy8I	GTNNAC	2 cut(s)	247, 336
Hpy99I	CGWCG	2 cut(s)	251, 302
HpyAV	CCTTC	2 cut(s)	39, 301
HpyCH4III	ACNGT	2 cut(s)	314, 544
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 454
HpyF3I	CTNAG	2 cut(s)	241, 330
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	77, 436
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	324, 472
LmnI	GCTCC	1 cut(s)	486
LpnPI	CCDG	9 cut(s)	58, 207, 217, 227, 384, 464, 483, 511, 587
Lsp1109I	GCAGC	1 cut(s)	444
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	233, 278
MalI	GATC	2 cut(s)	326, 474
MboI	GATC	2 cut(s)	324, 472
MboII	GAAGA	8 cut(s)	155, 219, 286, 376, 467, 538, 573, 576
MlsI	TGGCCA	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	204, 233
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	34, 96, 120, 191, 414, 477, 566
Mox20I	TGGCCA	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	4 cut(s)	18, 263, 357, 402
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	2 cut(s)	45, 371
MspR9I	CCNGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	347, 454
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	324, 472
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	77, 436
NlaIV	GGNNCC	2 cut(s)	369, 606
NmuCI	GTSAC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 252
PdiI	GCCGGC	1 cut(s)	372
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	271, 459
PleI	GAGTC	2 cut(s)	204, 233
PpsI	GAGTC	2 cut(s)	204, 233
PpuMI	RGGWCCY	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	369, 606
PspPI	GGNCC	1 cut(s)	604
PspPPI	RGGWCCY	1 cut(s)	604
PsrI	GAACNNNNNNTAC	2 cut(s)	407, 439
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	18, 263, 357, 402
SatI	GCNGC	2 cut(s)	270, 458
Sau3AI	GATC	2 cut(s)	324, 472
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	2 cut(s)	204, 233
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	8 cut(s)	183, 252, 352, 395, 425, 491, 533, 606
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	604
SsiI	CCGC	3 cut(s)	259, 270, 339
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	2 cut(s)	228, 363
TaaI	ACNGT	2 cut(s)	314, 544
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	246, 297
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	4 cut(s)	18, 263, 357, 402
Tru9I	TTAA	4 cut(s)	18, 263, 357, 402
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.