Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Forward (+)

55822728 .. 55823279

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCCATAAACGAGGTCGTTTTAATTTTCTTCCATCTTGAATGCAAAGATATTCGTTTGGGCCAATCTGAGTCGCTGTCTTGCTCCAGATTAACTCCTCCCCTTCACCCAAAAAACCCGGACTTCCATTTCTCTGTAGAAATGGCCATGTCCAACTTCCTCTCCCCCACAACCCCTCTTCGCCTCTCCCACAGACCCTTTATTCACTCCTCCCCATTCTCTCTAACCCACCATTCTCTTCTCACTCTCACCCACCTCTCCACCAACCCAGTCAAACCCAGAAGACTCCTGACCACCCAATCCAAGGGTGACGACTCAGTCGACGTCCCCGACCGCTTAATCGCCGCCGTCTGTTACTTCTACCCCTTCTTCGACGGCATACAATACGGAACCAGAACTTTAGTAGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

7.84

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AatII	GACGTC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	2 cut(s)	334, 345
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	41
AoxI	GGCC	2 cut(s)	61, 144
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	98, 241, 320
BalI	TGGCCA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	289
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	2 cut(s)	332, 391
BcnI	CCSGG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	60, 330
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	87, 199
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	63, 146
BsiEI	CGRYCG	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	63, 146
BspACI	CCGC	2 cut(s)	334, 345
BspANI	GGCC	2 cut(s)	63, 146
BspCNI	CTCAG	2 cut(s)	61, 329
BspLI	GGNNCC	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	303
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	183, 243
BstACI	GRCGYC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	69, 316
BstMCI	CGRYCG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	63, 146
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	2 cut(s)	63, 146
CviKI_1	RGCY	2 cut(s)	63, 146
DdeI	CTNAG	2 cut(s)	69, 316
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	183, 243
EarI	CTCTTC	2 cut(s)	183, 243
Eco130I	CCWWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	151
FaiI	YATR	4 cut(s)	8, 149, 380, 410
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	63, 146
HapII	CCGG	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	3 cut(s)	71, 285, 314
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	3 cut(s)	98, 241, 320
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	38, 87, 289
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	2 cut(s)	326, 377
HpyAV	CCTTC	2 cut(s)	113, 376
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	69, 316
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	100, 132, 282, 292, 302, 406
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	308, 353
MboII	GAAGA	5 cut(s)	22, 170, 230, 294, 361
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	3 cut(s)	80, 279, 308
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	7, 108, 170, 186, 194, 220, 266
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	23, 92, 338
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	119
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 327
PctI	GAATGC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	3 cut(s)	79, 279, 308
PpsI	GAGTC	3 cut(s)	79, 279, 308
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	23, 92, 338
SatI	GCNGC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	3 cut(s)	80, 279, 308
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	4 cut(s)	18, 258, 327, 409
SfcI	CTRYAG	1 cut(s)	135
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	334, 345
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	321, 372
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	23, 92, 338
Tru9I	TTAA	3 cut(s)	23, 92, 338
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	402
Tth111I	GACNNNGTC	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	321
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.