Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012081.1

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Forward (+)

12158 .. 12790

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtccaacttcctctcccccacaactcctcttcgcctctcccacagaccctttattcactcctccccattctctctaacccacccatctcttctcactctcacccacctctccaccaacccagtcaaacccagaagactcctgaccacccaatccaagggtgacgactcagtcgacgtccccgaccgcttaatcgccgccgtctgttacttctaccccttcttcgacggcatacaatacggtaaatatgtgattactcagttcaccgccattcaagctctgattaaccccttggtgccggctatacgggtcttcaagagcttcccctttaatgggttcttggtatttttaaccctctactttggtgttgttaggaaccagaactttagtaggtatgtgaggttcaataccatgcaagtcattgtgcttgatgtgctgctcatttttcctgatcttctggagaggagcttcaatcccagagatgggttgggattggatgtgctgatgagcttggatagtaccgtcttccttttcctcttggtgtgtttgatttatgcgtcttcttcttgcttgttgggtcaggtccccagattgcccattgtagctgaagctgctgataggcaggttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

210

Amino Acids

23.69

Weight (kDa)

9.12

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	187, 198, 267
AcuI	CTGAAG	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	5 cut(s)	157, 332, 333, 482, 483
AgsI	TTSAA	4 cut(s)	275, 316, 406, 472
AluBI	AGCT	6 cut(s)	278, 321, 468, 510, 605, 611
AluI	AGCT	6 cut(s)	278, 321, 468, 510, 605, 611
ApeKI	GCWGC	2 cut(s)	436, 611
AspS9I	GGNCC	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	94, 173, 256
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	4 cut(s)	142, 304, 517, 552
BbvI	GCAGC	2 cut(s)	423, 598
BccI	CCATC	2 cut(s)	94, 476
BceAI	ACGGC	2 cut(s)	185, 244
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	198, 437, 612
BlsI	GCNGC	3 cut(s)	199, 438, 613
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	4 cut(s)	297, 377, 585, 627
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	4 cut(s)	142, 304, 517, 552
BpmI	CTGGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	156, 291
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 332, 333, 482, 483
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	156, 291
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	5 cut(s)	157, 332, 333, 482, 483
BseMII	CTCAG	2 cut(s)	183, 272
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	3 cut(s)	18, 52, 478
BseXI	GCAGC	2 cut(s)	423, 598
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	164, 569
BslI	CCNNNNNNNGG	5 cut(s)	157, 332, 333, 482, 483
BsmFI	GGGAC	2 cut(s)	164, 569
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	3 cut(s)	187, 198, 267
BspCNI	CTCAG	2 cut(s)	182, 271
BspLI	GGNNCC	4 cut(s)	297, 377, 585, 627
BspMI	ACCTGC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	156, 291
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	156, 291
Bst4CI	ACNGT	2 cut(s)	242, 523
Bst6I	CTCTTC	2 cut(s)	36, 96
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	169, 258
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 433, 611
BstV1I	GCAGC	2 cut(s)	423, 598
BstV2I	GAAGAC	4 cut(s)	142, 304, 517, 552
BtsCI	GGATG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	583
CseI	GACGC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	7 cut(s)	278, 302, 321, 468, 510, 605, 611
CviKI_1	RGCY	7 cut(s)	278, 302, 321, 468, 510, 605, 611
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	2 cut(s)	169, 258
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	36, 96
EarI	CTCTTC	2 cut(s)	36, 96
Eco130I	CCWWGG	2 cut(s)	156, 291
Eco47I	GGWCC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	156, 291
ErhI	CCWWGG	2 cut(s)	156, 291
FaeI	CATG	1 cut(s)	415
FaiI	YATR	6 cut(s)	233, 249, 305, 396, 413, 555
FaqI	GGGAC	2 cut(s)	164, 569
FatI	CATG	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	198, 437, 612
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	198, 437, 612
GluI	GCNGC	3 cut(s)	198, 437, 612
GsuI	CTGGAG	1 cut(s)	479
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	546
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	138, 167
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	3 cut(s)	94, 173, 256
Hpy166II	GTNNAC	2 cut(s)	175, 264
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	142, 316, 449, 458
Hpy8I	GTNNAC	2 cut(s)	175, 264
Hpy99I	CGWCG	2 cut(s)	179, 230
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	242, 523
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 433, 611
HpyF3I	CTNAG	2 cut(s)	169, 258
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	2 cut(s)	423, 598
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	161, 206
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	9 cut(s)	23, 83, 147, 214, 304, 446, 517, 552, 555
MlyI	GAGTC	2 cut(s)	132, 161
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	23, 39, 47, 73, 119, 365, 393, 456, 545
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	4 cut(s)	191, 285, 330, 350
MspI	CCGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	275, 433, 611
NaeI	GCCGGC	1 cut(s)	300
NdeII	GATC	1 cut(s)	451
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	4 cut(s)	297, 377, 585, 627
NmuCI	GTSAC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 180
PdiI	GCCGGC	1 cut(s)	300
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	199, 438, 613
PleI	GAGTC	2 cut(s)	132, 161
PpsI	GAGTC	2 cut(s)	132, 161
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
PspN4I	GGNNCC	4 cut(s)	297, 377, 585, 627
PspPI	GGNCC	1 cut(s)	583
PspPPI	RGGWCCY	1 cut(s)	583
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	191, 285, 330, 350
SatI	GCNGC	3 cut(s)	198, 437, 612
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	2 cut(s)	132, 161
SinI	GGWCC	1 cut(s)	583
SsiI	CCGC	3 cut(s)	187, 198, 267
StyI	CCWWGG	2 cut(s)	156, 291
TaaI	ACNGT	2 cut(s)	242, 523
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	174, 225
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	4 cut(s)	191, 285, 330, 350
Tru9I	TTAA	4 cut(s)	191, 285, 330, 350
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	436, 611
Tsp45I	GTSAC	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	174
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.