Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010435

Physical Location & Seq

Genomic Coordinates Forward (+)

51045439 .. 51046473

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG387600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCATGTCCAACTTCCTCTGCCCCACAGCCCCTCTTCGCCTCTCCCACAGACCCCCCTTTATTCACTCCTCCCCATTCTCTCTAAACCACCAATCTCTTCTCACTCTCACCCACCCCTCCACCAACCCAGTCAAACCCAGAAGACTCCTGACCACCCAATCCAAGGGTGACGACTCAGTCGACGTCCCCGACCGCTTAATCGCCGCCGTCTGTTACTTCTACCCCTTCTTCGACGGCATACAATACGGTAAATATGTGATCACTCAGTTCACCGCCATTCAAGCTCTGATTAACCCCTTGGTGCCGGCTATAAGGGTCTTCAAGAGCTTCCCCTTTAATGGGTTCTTGGTGTTTTTAACCCTCTACTTTGGTGTTGTTAGGAACCAGAACTTTAGTAGGTATGTGAGGTTCAATACCATGCAAGTCATTGTGCTTGATGTGCTGCTCATTTTCCCTGATCTTCTGGAGAGGAGCTTCAATCCCAGAGATGGGTTGGGATTGGATGTGCTGATGAGCTTGGATAGTACCGTGTTCCTTTTCCTCTTGGTGTGTTTGATTTATGCGTCTTCTTCTTGCTTGTTGGGTCAGGTGCCCAGATTGCCCATTGTAGCTGAAGCTGCTGATAGGCAAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

213

Amino Acids

24.0

Weight (kDa)

9.0

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	66 - 208	9.5e-53	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55710
fragaria_vesca	FvH4_3g29100
malus_domestica	MD03G1179100.v1.1 MD11G1198300.v1.1
prunus_persica	Prupe.4G244200_v2.0.a1 Prupe.4G244200_v2.0.a1
pyrus_communis	pycom03g13510
rosa_chinensis	RchiOBHm_Chr5g0051381 RchiOBHm_Chr5g0053421 RchiOBHm_Chr5g0053431
rosa_laevigata	RLG00000034877
rosa_multiflora	Rmu_co8495315.1_g000001 Rmu_sc0012081.1_g000001 Rmu_sc0012521.1_g000015
rosa_roxburghii	Rroxscaffold_1G00027040
rosa_rugosa	Rorug05G0279800
rosa_samantha	Rh5AG350900 Rh5BG363200 Rh5CG387600 Rh5DG377500
rosa_wichuraiana	Rw5G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	189
AccB1I	GGYRCC	2 cut(s)	304, 592
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	3 cut(s)	196, 207, 276
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	5 cut(s)	166, 341, 342, 491, 492
AgsI	TTSAA	4 cut(s)	284, 325, 415, 481
AluBI	AGCT	6 cut(s)	287, 330, 477, 519, 614, 620
AluI	AGCT	6 cut(s)	287, 330, 477, 519, 614, 620
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	445, 620
AsuHPI	GGTGA	3 cut(s)	103, 182, 265
BaeGI	GKGCMC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	304, 592
BbsI	GAAGAC	3 cut(s)	151, 313, 561
BbvI	GCAGC	2 cut(s)	432, 607
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	2 cut(s)	194, 253
BclI	TGATCA	1 cut(s)	261
BisI	GCNGC	3 cut(s)	207, 446, 621
BlsI	GCNGC	3 cut(s)	208, 447, 622
BmiI	GGNNCC	3 cut(s)	306, 386, 594
BmrI	ACTGGG	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	3 cut(s)	151, 313, 561
BpmI	CTGGAG	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	165, 300
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 341, 342, 491, 492
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	165, 300
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	5 cut(s)	166, 341, 342, 491, 492
BseMII	CTCAG	2 cut(s)	192, 281
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	2 cut(s)	61, 487
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	432, 607
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	304, 592
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	5 cut(s)	166, 341, 342, 491, 492
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	261, 460
BspACI	CCGC	3 cut(s)	196, 207, 276
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	191, 280
BspLI	GGNNCC	3 cut(s)	306, 386, 594
BspT107I	GGYRCC	2 cut(s)	304, 592
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	165, 300
BssMI	GATC	2 cut(s)	261, 460
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	165, 300
Bst4CI	ACNGT	2 cut(s)	251, 532
Bst6I	CTCTTC	2 cut(s)	42, 105
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	178, 267
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	264, 463
BstMBI	GATC	2 cut(s)	261, 460
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 442, 601, 620
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	432, 607
BstV2I	GAAGAC	3 cut(s)	151, 313, 561
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	307
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	2 cut(s)	7, 421
CviJI	RGCY	9 cut(s)	5, 32, 287, 311, 330, 477, 519, 614, 620
CviKI_1	RGCY	9 cut(s)	5, 32, 287, 311, 330, 477, 519, 614, 620
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	2 cut(s)	178, 267
DpnI	GATC	2 cut(s)	263, 462
DpnII	GATC	2 cut(s)	261, 460
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	42, 105
EarI	CTCTTC	2 cut(s)	42, 105
Eco130I	CCWWGG	2 cut(s)	165, 300
Eco57I	CTGAAG	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	165, 300
ErhI	CCWWGG	2 cut(s)	165, 300
FaeI	CATG	2 cut(s)	10, 424
FaiI	YATR	7 cut(s)	8, 242, 258, 314, 405, 422, 564
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	6, 420
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	207, 446, 621
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	207, 446, 621
GluI	GCNGC	3 cut(s)	207, 446, 621
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	10, 424
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	147, 176
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	103, 182, 265
Hpy166II	GTNNAC	2 cut(s)	184, 273
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	3 cut(s)	151, 325, 467
Hpy8I	GTNNAC	2 cut(s)	184, 273
Hpy99I	CGWCG	2 cut(s)	188, 239
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	251, 532
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 442, 601, 620
HpyF3I	CTNAG	2 cut(s)	178, 267
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	10, 424
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	261, 460
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	2 cut(s)	432, 607
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	170, 215
MalI	GATC	2 cut(s)	263, 462
MboI	GATC	2 cut(s)	261, 460
MboII	GAAGA	8 cut(s)	29, 92, 156, 223, 313, 455, 561, 564
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	141, 170
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	9 cut(s)	29, 45, 53, 82, 130, 374, 402, 465, 554
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	200, 294, 339, 359
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	284, 442, 601, 620
NaeI	GCCGGC	1 cut(s)	309
NdeII	GATC	2 cut(s)	261, 460
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	10, 424
NlaIV	GGNNCC	3 cut(s)	306, 386, 594
NmuCI	GTSAC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 189
PdiI	GCCGGC	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	208, 447, 622
PleI	GAGTC	2 cut(s)	141, 170
PpsI	GAGTC	2 cut(s)	141, 170
PspN4I	GGNNCC	3 cut(s)	306, 386, 594
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	200, 294, 339, 359
SatI	GCNGC	3 cut(s)	207, 446, 621
Sau3AI	GATC	2 cut(s)	261, 460
SchI	GAGTC	2 cut(s)	141, 170
SduI	GDGCHC	1 cut(s)	597
SsiI	CCGC	3 cut(s)	196, 207, 276
StyI	CCWWGG	2 cut(s)	165, 300
TaaI	ACNGT	2 cut(s)	251, 532
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	183, 234
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	4 cut(s)	200, 294, 339, 359
Tru9I	TTAA	4 cut(s)	200, 294, 339, 359
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	445, 620
Tsp45I	GTSAC	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	183
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.