RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13190 |
| fragaria_vesca | FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170 |
| malus_domestica | MD13G1106000.v1.1 MD16G1106200.v1.1 |
| prunus_persica | Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 |
| pyrus_communis | pycom13g09200 pycom16g09030 |
| rosa_chinensis | RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371 |
| rosa_laevigata | RLG00000006849 RLG00000006850 |
| rosa_multiflora | Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00373810 Rroxscaffold_5G00373820 |
| rosa_rugosa | Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900 |
| rosa_samantha | Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900 |
| rosa_wichuraiana | Rw4G027260 Rw4G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 130 |
| AcsI | RAATTY | 2 cut(s) | 231, 395 |
| AcuI | CTGAAG | 1 cut(s) | 429 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 362 |
| AflIII | ACRYGT | 1 cut(s) | 457 |
| AgsI | TTSAA | 4 cut(s) | 170, 206, 345, 416 |
| AluBI | AGCT | 4 cut(s) | 32, 173, 209, 449 |
| AluI | AGCT | 4 cut(s) | 32, 173, 209, 449 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| ApoI | RAATTY | 2 cut(s) | 231, 395 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 259 |
| AspS9I | GGNCC | 1 cut(s) | 440 |
| AvaII | GGWCC | 1 cut(s) | 440 |
| BanI | GGYRCC | 1 cut(s) | 130 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BccI | CCATC | 1 cut(s) | 43 |
| BfaI | CTAG | 1 cut(s) | 429 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BisI | GCNGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 1 cut(s) | 34 |
| Bme18I | GGWCC | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 1 cut(s) | 440 |
| BmiI | GGNNCC | 1 cut(s) | 132 |
| BmsI | GCATC | 4 cut(s) | 10, 105, 127, 224 |
| BpmI | CTGGAG | 1 cut(s) | 95 |
| BpuEI | CTTGAG | 1 cut(s) | 300 |
| Bsa29I | ATCGAT | 1 cut(s) | 121 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 172, 202 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 362 |
| Bse1I | ACTGG | 4 cut(s) | 134, 293, 394, 442 |
| BseCI | ATCGAT | 1 cut(s) | 121 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 362 |
| BseMII | CTCAG | 3 cut(s) | 117, 188, 233 |
| BseNI | ACTGG | 4 cut(s) | 134, 293, 394, 442 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BshNI | GGYRCC | 1 cut(s) | 130 |
| BshVI | ATCGAT | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 362 |
| Bsp143I | GATC | 2 cut(s) | 73, 122 |
| BspCNI | CTCAG | 3 cut(s) | 118, 187, 232 |
| BspDI | ATCGAT | 1 cut(s) | 121 |
| BspLI | GGNNCC | 1 cut(s) | 132 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspT107I | GGYRCC | 1 cut(s) | 130 |
| BsrI | ACTGG | 4 cut(s) | 134, 293, 394, 442 |
| BssMI | GATC | 2 cut(s) | 73, 122 |
| Bst4CI | ACNGT | 2 cut(s) | 184, 268 |
| Bst6I | CTCTTC | 1 cut(s) | 417 |
| BstDEI | CTNAG | 4 cut(s) | 126, 174, 197, 219 |
| BstKTI | GATC | 2 cut(s) | 76, 125 |
| BstMBI | GATC | 2 cut(s) | 73, 122 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 29, 461 |
| BstNSI | RCATGY | 1 cut(s) | 461 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| Bsu15I | ATCGAT | 1 cut(s) | 121 |
| BsuTUI | ATCGAT | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| Cfr13I | GGNCC | 1 cut(s) | 440 |
| ClaI | ATCGAT | 1 cut(s) | 121 |
| CviAII | CATG | 1 cut(s) | 458 |
| CviJI | RGCY | 8 cut(s) | 32, 143, 173, 209, 289, 299, 409, 449 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 143, 173, 209, 289, 299, 409, 449 |
| DdeI | CTNAG | 4 cut(s) | 126, 174, 197, 219 |
| DpnI | GATC | 2 cut(s) | 75, 124 |
| DpnII | GATC | 2 cut(s) | 73, 122 |
| Eam1104I | CTCTTC | 1 cut(s) | 417 |
| EarI | CTCTTC | 1 cut(s) | 417 |
| Eco47I | GGWCC | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 1 cut(s) | 429 |
| EcoT22I | ATGCAT | 1 cut(s) | 120 |
| FaeI | CATG | 1 cut(s) | 461 |
| FaiI | YATR | 6 cut(s) | 69, 81, 327, 329, 353, 459 |
| FatI | CATG | 1 cut(s) | 457 |
| FauNDI | CATATG | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 1 cut(s) | 33 |
| Fsp4HI | GCNGC | 1 cut(s) | 33 |
| FspBI | CTAG | 1 cut(s) | 429 |
| GluI | GCNGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 461 |
| HinfI | GANTC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 112, 221, 272 |
| HpyAV | CCTTC | 3 cut(s) | 151, 274, 453 |
| HpyCH4III | ACNGT | 2 cut(s) | 184, 268 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 118, 215, 455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 29, 461 |
| HpyF3I | CTNAG | 4 cut(s) | 126, 174, 197, 219 |
| Hsp92II | CATG | 1 cut(s) | 461 |
| Kzo9I | GATC | 2 cut(s) | 73, 122 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 4 cut(s) | 10, 105, 127, 224 |
| MaeI | CTAG | 1 cut(s) | 429 |
| MaeIII | GTNAC | 1 cut(s) | 385 |
| MalI | GATC | 2 cut(s) | 75, 124 |
| MboI | GATC | 2 cut(s) | 73, 122 |
| MboII | GAAGA | 3 cut(s) | 53, 68, 404 |
| MluCI | AATT | 4 cut(s) | 231, 256, 348, 395 |
| MmeI | TCCRAC | 2 cut(s) | 76, 229 |
| MnlI | CCTC | 7 cut(s) | 94, 119, 121, 155, 245, 367, 420 |
| Mph1103I | ATGCAT | 1 cut(s) | 120 |
| MroXI | GAANNNNTTC | 1 cut(s) | 259 |
| MspA1I | CMGCKG | 1 cut(s) | 449 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 29, 461 |
| NdeI | CATATG | 1 cut(s) | 327 |
| NdeII | GATC | 2 cut(s) | 73, 122 |
| NlaIII | CATG | 1 cut(s) | 461 |
| NlaIV | GGNNCC | 1 cut(s) | 132 |
| NsiI | ATGCAT | 1 cut(s) | 120 |
| NspI | RCATGY | 1 cut(s) | 461 |
| PciI | ACATGT | 1 cut(s) | 457 |
| PdmI | GAANNNNTTC | 1 cut(s) | 259 |
| PfeI | GAWTC | 1 cut(s) | 374 |
| PkrI | GCNGC | 1 cut(s) | 34 |
| PscI | ACATGT | 1 cut(s) | 457 |
| PspN4I | GGNNCC | 1 cut(s) | 132 |
| PspPI | GGNCC | 1 cut(s) | 440 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PvuII | CAGCTG | 1 cut(s) | 449 |
| SatI | GCNGC | 1 cut(s) | 33 |
| Sau3AI | GATC | 2 cut(s) | 73, 122 |
| Sau96I | GGNCC | 1 cut(s) | 440 |
| SetI | ASST | 6 cut(s) | 19, 34, 175, 211, 285, 451 |
| SfaNI | GCATC | 4 cut(s) | 10, 105, 127, 224 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SinI | GGWCC | 1 cut(s) | 440 |
| SmlI | CTYRAG | 1 cut(s) | 315 |
| SmoI | CTYRAG | 1 cut(s) | 315 |
| Sse9I | AATT | 4 cut(s) | 231, 256, 348, 395 |
| SspMI | CTAG | 1 cut(s) | 429 |
| TaaI | ACNGT | 2 cut(s) | 184, 268 |
| TaqI | TCGA | 2 cut(s) | 121, 359 |
| TasI | AATT | 4 cut(s) | 231, 256, 348, 395 |
| TfiI | GAWTC | 1 cut(s) | 374 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TseI | GCWGC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 3 cut(s) | 54, 242, 437 |
| TspRI | CASTG | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 1 cut(s) | 440 |
| XapI | RAATTY | 2 cut(s) | 231, 395 |
| XceI | RCATGY | 1 cut(s) | 461 |
| XmnI | GAANNNNTTC | 1 cut(s) | 259 |
| XspI | CTAG | 1 cut(s) | 429 |
| Zsp2I | ATGCAT | 1 cut(s) | 120 |