Rmu_sc0001084.1_g000036

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001084.1
Physical Location & Seq
Forward (+)
151133 .. 153070
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001084.1_g000036.1.cds

Sequence Viewer

Length: 1938 bp
atggccgaggagcaaatagattatgaagaggaggagtatggaggtgctcagaagctccaatatcaggaaagtggagccatacctgctcttgctgatgaagaaccgatggtagaagatgacgagtatgacgatctctacaatgatgttaatgttggagaaggtttcctgcagatgcaccgacctgaggcaccacacccacctgctggtgttggcaatggaggactccaagctcagaaaaataatgttcctgaagtaagagttcaagctggtgtttctcaggaactgaaaaatccgggattttcagttgaaggaaagtattctagtgttcctgaacagaaggatcagcccccagtgtctaaggtgccagaactgggatctcaaaaggggagggttatggagatgactcatgatgctcaagtcaggaatatgggttttcaggggacagcaactatgccgtccaatgttggtgttgattcttcttcagatcttactgggaaaattgccaatgggcctattccatcaatgaattctagcactactggtcctccagcggttccacagatgcaggctaatcaaatgaatatgaagataaatgttaatcgtcctatggttaatgaaaaccaaattcgtcccccaattgagaatggttcagccacactgtttgtgggagaactccattggtggactactgatgctgaactggaaagtgttttgtctcagtttgggaggatcaaggaaattaagttctttgatgagagagccagtggtaaatccaaaggttattgtcaggtagatttttatgatccagtggctgccagtgcatgcaaagagggaatggatggttatgtttttaatgggagagcttgtgttgtcgcctttgcttcttcacaaactttaaagcagatgggagattcttatgtcagcaaatcccaaggccaggttcagactcagccccaaggaagaaggcctatgaatgacggtgctgggagagggggaaatatgaattatcaaggtggagacacagggagaaattttggaaggggtaataattggggacgaggtggacagggagtactcaacagaggtcctggtggtggaggaccagggaggggacgaggaggggccatgggtgcaaggaacatggttggaaacaatgctggggttggagctggtgctaatggaggaggctatggacagggccttggaggtcctggatttggcggtcctgttggaggtatgatgaatgcaccgggtatgatgggtcctgggtttgatccaacgtatatgggtcgaggaggtggttacggagggtttcctggtcctggttttcctggaatgcttcctcaatttcctggtgttaatgcaatgggacttgctggggttgctcctcacgtaaacccagctttctttggcaggggaatggctacgaatgggatggggatgatgggttcttctggaatggaggggcatcatgccccgatgtggaatgatccaagcatggctgggtggactggagaagaacaggatcgaagaactagggaatcaagctatggtggtgatgatggtgcatctgagtatggaaactatggggaggcaactcatgagaaatcagttaggtcaagtgctgcccctagggaaagggaacgggaatctgagcgtgagtggacaggaacctctgagaggaggcatcgtgatgaaagggaacaagactgggataggtctgagagggagcacagggagcccaggtacaaggaagaaaaagatagttaccgagaccataggcggagggagcgtgacgtggcctatgaggatgaccgggacagaggacactcttcttcaagacctcgcagcaggtccaaggcaatgccagaagatgatcatcgttctcgatcaagggatatggattatgggaagaggagacgattgccatctgagtga

Protein Analysis

645

Amino Acids

69.88

Weight (kDa)

5.58

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 3 cut(s) 91, 208, 1842
AccB1I GGYRCC 2 cut(s) 187, 361
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 3 cut(s) 551, 1221, 1783
AclWI GGATC 7 cut(s) 348, 382, 737, 797, 1268, 1484, 1533
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 526, 624, 1030
AcuI CTGAAG 2 cut(s) 270, 465
AfaI GTAC 2 cut(s) 1074, 1748
AgsI TTSAA 3 cut(s) 263, 308, 1839
AjiI CACGTC 1 cut(s) 1798
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AloI GAACNNNNNNTCC 4 cut(s) 728, 760, 1432, 1464
AluBI AGCT 7 cut(s) 55, 230, 266, 863, 1169, 1403, 1548
AluI AGCT 7 cut(s) 55, 230, 266, 863, 1169, 1403, 1548
Alw21I GWGCWC 2 cut(s) 49, 1734
Alw26I GTCTC 4 cut(s) 720, 1011, 1767, 1912
AlwI GGATC 7 cut(s) 348, 382, 737, 797, 1268, 1484, 1533
AlwNI CAGNNNCTG 2 cut(s) 283, 812
AoxI GGCC 7 cut(s) 3, 509, 934, 965, 1122, 1198, 1800
ApeKI GCWGC 3 cut(s) 812, 1625, 1848
ApoI RAATTY 3 cut(s) 526, 624, 1030
Asp700I GAANNNNTTC 1 cut(s) 316
AspA2I CCTAGG 1 cut(s) 1631
AsuC2I CCSGG 3 cut(s) 294, 1251, 1817
AsuHPI GGTGA 1 cut(s) 1568
AvaII GGWCC 8 cut(s) 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854
AvrII CCTAGG 1 cut(s) 1631
AxyI CCTNAGG 1 cut(s) 183
BanI GGYRCC 2 cut(s) 187, 361
BanII GRGCYC 1 cut(s) 1743
Bbv12I GWGCWC 2 cut(s) 49, 1734
BbvI GCAGC 3 cut(s) 799, 1612, 1860
BccI CCATC 9 cut(s) 100, 526, 833, 898, 1252, 1429, 1438, 1556, 1936
BceAI ACGGC 1 cut(s) 439
BclI TGATCA 1 cut(s) 1876
BcnI CCSGG 3 cut(s) 294, 1251, 1817
BcoDI GTCTC 4 cut(s) 720, 1011, 1767, 1912
BfaI CTAG 4 cut(s) 321, 531, 1536, 1632
BfmI CTRYAG 1 cut(s) 167
BfuAI ACCTGC 3 cut(s) 91, 208, 1842
BglII AGATCT 1 cut(s) 484
BisI GCNGC 3 cut(s) 813, 1626, 1849
BlnI CCTAGG 1 cut(s) 1631
BlsI GCNGC 3 cut(s) 814, 1627, 1850
BmcAI AGTACT 1 cut(s) 1074
Bme18I GGWCC 8 cut(s) 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854
BmgBI CACGTC 1 cut(s) 1798
BmiI GGNNCC 8 cut(s) 76, 189, 363, 555, 1123, 1263, 1672, 1740
BmrI ACTGGG 4 cut(s) 344, 380, 501, 1720
BmsI GCATC 7 cut(s) 162, 400, 552, 682, 1477, 1577, 1696
BmuI ACTGGG 4 cut(s) 344, 380, 501, 1720
BpmI CTGGAG 2 cut(s) 531, 1533
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 3 cut(s) 294, 1251, 1817
BsaAI YACGTR 1 cut(s) 1393
BsaBI GATNNNNATC 2 cut(s) 1878, 1927
BsaI GGTCTC 1 cut(s) 1767
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 3 cut(s) 220, 1371, 1869
Bse8I GATNNNNATC 2 cut(s) 1878, 1927
BseGI GGATG 4 cut(s) 844, 1440, 1446, 1816
BseJI GATNNNNATC 2 cut(s) 1878, 1927
BseMI GCAATG 3 cut(s) 220, 1371, 1869
BseRI GAGGAG 9 cut(s) 23, 44, 47, 1131, 1197, 1308, 1377, 1696, 1930
BseXI GCAGC 3 cut(s) 799, 1612, 1860
BseYI CCCAGC 5 cut(s) 983, 1157, 1376, 1399, 1502
BshFI GGCC 7 cut(s) 5, 511, 936, 967, 1124, 1200, 1802
BshNI GGYRCC 2 cut(s) 187, 361
BsiHKAI GWGCWC 2 cut(s) 49, 1734
BsiSI CCGG 3 cut(s) 293, 1250, 1816
BslFI GGGAC 6 cut(s) 454, 615, 1068, 1125, 1383, 1832
BsmAI GTCTC 4 cut(s) 720, 1011, 1767, 1912
BsmBI CGTCTC 1 cut(s) 1912
BsmFI GGGAC 6 cut(s) 454, 615, 1068, 1125, 1383, 1832
BsmI GAATGC 2 cut(s) 1249, 1341
BsnI GGCC 7 cut(s) 5, 511, 936, 967, 1124, 1200, 1802
Bso31I GGTCTC 1 cut(s) 1767
Bsp1286I GDGCHC 3 cut(s) 49, 1734, 1743
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 3 cut(s) 551, 1221, 1783
BspANI GGCC 7 cut(s) 5, 511, 936, 967, 1124, 1200, 1802
BspHI TCATGA 2 cut(s) 406, 1600
BspLI GGNNCC 8 cut(s) 76, 189, 363, 555, 1123, 1263, 1672, 1740
BspMAI CTGCAG 1 cut(s) 171
BspMI ACCTGC 3 cut(s) 91, 208, 1842
BspPI GGATC 7 cut(s) 348, 382, 737, 797, 1268, 1484, 1533
BspT107I GGYRCC 2 cut(s) 187, 361
BspTNI GGTCTC 1 cut(s) 1767
BsrDI GCAATG 3 cut(s) 220, 1371, 1869
BssT1I CCWWGG 6 cut(s) 931, 955, 1125, 1201, 1631, 1857
Bst4CI ACNGT 2 cut(s) 660, 980
Bst6I CTCTTC 3 cut(s) 21, 1837, 1907
BstBAI YACGTR 1 cut(s) 1393
BstC8I GCNNGC 2 cut(s) 567, 823
BstDSI CCRYGG 1 cut(s) 1125
BstENI CCTNNNNNAGG 2 cut(s) 1230, 1678
BstF5I GGATG 4 cut(s) 844, 1440, 1446, 1816
BstMAI GTCTC 4 cut(s) 720, 1011, 1767, 1912
BstMWI GCNNNNNNNGC 6 cut(s) 83, 818, 1130, 1382, 1738, 1789
BstNSI RCATGY 1 cut(s) 825
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 799, 1612, 1860
BstX2I RGATCY 2 cut(s) 374, 484
BstYI RGATCY 2 cut(s) 374, 484
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 7 cut(s) 5, 511, 936, 967, 1124, 1200, 1802
BtgI CCRYGG 1 cut(s) 1125
BtrI CACGTC 1 cut(s) 1798
BtsCI GGATG 4 cut(s) 844, 1440, 1446, 1816
BtsIMutI CAGTG 5 cut(s) 357, 656, 769, 813, 823
BveI ACCTGC 3 cut(s) 91, 208, 1842
Cac8I GCNNGC 2 cut(s) 567, 823
CaiI CAGNNNCTG 2 cut(s) 283, 812
CciI TCATGA 2 cut(s) 406, 1600
Csp6I GTAC 2 cut(s) 1073, 1747
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 7 cut(s) 407, 822, 1126, 1141, 1472, 1498, 1601
CviQI GTAC 2 cut(s) 1073, 1747
DraI TTTAAA 1 cut(s) 897
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 21, 1837, 1907
EarI CTCTTC 3 cut(s) 21, 1837, 1907
EciI GGCGGA 1 cut(s) 1798
Eco130I CCWWGG 6 cut(s) 931, 955, 1125, 1201, 1631, 1857
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 1743
Eco31I GGTCTC 1 cut(s) 1767
Eco47I GGWCC 8 cut(s) 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854
Eco57I CTGAAG 2 cut(s) 270, 465
Eco81I CCTNAGG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 1230, 1678
EcoO109I RGGNCCY 4 cut(s) 1085, 1198, 1208, 1262
EcoRI GAATTC 1 cut(s) 526
EcoT14I CCWWGG 6 cut(s) 931, 955, 1125, 1201, 1631, 1857
EcoT38I GRGCYC 1 cut(s) 1743
ErhI CCWWGG 6 cut(s) 931, 955, 1125, 1201, 1631, 1857
Esp3I CGTCTC 1 cut(s) 1912
FaeI CATG 7 cut(s) 410, 825, 1129, 1144, 1475, 1501, 1604
FaqI GGGAC 6 cut(s) 454, 615, 1068, 1125, 1383, 1832
FatI CATG 7 cut(s) 406, 821, 1125, 1140, 1471, 1497, 1600
FbaI TGATCA 1 cut(s) 1876
Fnu4HI GCNGC 3 cut(s) 813, 1626, 1849
FokI GGATG 4 cut(s) 851, 1447, 1453, 1823
FriOI GRGCYC 1 cut(s) 1743
Fsp4HI GCNGC 3 cut(s) 813, 1626, 1849
FspBI CTAG 4 cut(s) 321, 531, 1536, 1632
GluI GCNGC 3 cut(s) 813, 1626, 1849
GsaI CCCAGC 5 cut(s) 987, 1161, 1380, 1403, 1506
GsuI CTGGAG 2 cut(s) 531, 1533
HaeIII GGCC 7 cut(s) 5, 511, 936, 967, 1124, 1200, 1802
HapII CCGG 3 cut(s) 293, 1250, 1816
Hin1II CATG 7 cut(s) 410, 825, 1129, 1144, 1475, 1501, 1604
HinfI GANTC 7 cut(s) 222, 403, 473, 911, 946, 1541, 1649
HpaII CCGG 3 cut(s) 293, 1250, 1816
HphI GGTGA 1 cut(s) 1568
Hpy166II GTNNAC 5 cut(s) 684, 1064, 1396, 1509, 1665
Hpy188I TCNGA 9 cut(s) 51, 234, 484, 945, 1573, 1654, 1678, 1723, 1933
Hpy8I GTNNAC 5 cut(s) 684, 1064, 1396, 1509, 1665
HpyAV CCTTC 5 cut(s) 152, 302, 331, 957, 1032
HpyCH4III ACNGT 2 cut(s) 660, 980
HpyCH4IV ACGT 3 cut(s) 1280, 1392, 1797
HpyCH4V TGCA 9 cut(s) 169, 175, 565, 821, 825, 1133, 1247, 1364, 1568
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 818, 1130, 1382, 1738, 1789
HpySE526I ACGT 3 cut(s) 1280, 1392, 1797
Hsp92II CATG 7 cut(s) 410, 825, 1129, 1144, 1475, 1501, 1604
Ksp22I TGATCA 1 cut(s) 1876
LmnI GCTCC 8 cut(s) 10, 60, 74, 1166, 1390, 1729, 1738, 1789
Lsp1109I GCAGC 3 cut(s) 799, 1612, 1860
LweI GCATC 7 cut(s) 162, 400, 552, 682, 1477, 1577, 1696
MaeI CTAG 4 cut(s) 321, 531, 1536, 1632
MaeII ACGT 3 cut(s) 1280, 1392, 1797
MaeIII GTNAC 3 cut(s) 1301, 1766, 1793
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 2 cut(s) 374, 484
MhlI GDGCHC 3 cut(s) 49, 1734, 1743
MluCI AATT 9 cut(s) 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346
MlyI GAGTC 3 cut(s) 216, 397, 940
MmeI TCCRAC 5 cut(s) 133, 1126, 1144, 1210, 1301
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 7 cut(s) 147, 597, 612, 741, 852, 896, 1359
MslI CAYNNNNRTG 2 cut(s) 1692, 1933
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 3 cut(s) 293, 1250, 1816
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 2 cut(s) 1249, 1341
MwoI GCNNNNNNNGC 6 cut(s) 83, 818, 1130, 1382, 1738, 1789
NciI CCSGG 3 cut(s) 294, 1251, 1817
NcoI CCATGG 1 cut(s) 1125
NlaIII CATG 7 cut(s) 410, 825, 1129, 1144, 1475, 1501, 1604
NlaIV GGNNCC 8 cut(s) 76, 189, 363, 555, 1123, 1263, 1672, 1740
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 1793
NspI RCATGY 1 cut(s) 825
PaeI GCATGC 1 cut(s) 825
PagI TCATGA 2 cut(s) 406, 1600
PaqCI CACCTGC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 2 cut(s) 1249, 1341
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 4 cut(s) 473, 911, 1541, 1649
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 3 cut(s) 292, 1210, 1330
PkrI GCNGC 3 cut(s) 814, 1627, 1850
PleI GAGTC 3 cut(s) 216, 397, 940
PpsI GAGTC 3 cut(s) 216, 397, 940
Ppu21I YACGTR 1 cut(s) 1393
PpuMI RGGWCCY 3 cut(s) 1085, 1208, 1262
Psp5II RGGWCCY 3 cut(s) 1085, 1208, 1262
PspFI CCCAGC 5 cut(s) 983, 1157, 1376, 1399, 1502
PspN4I GGNNCC 8 cut(s) 76, 189, 363, 555, 1123, 1263, 1672, 1740
PspPPI RGGWCCY 3 cut(s) 1085, 1208, 1262
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 2 cut(s) 283, 812
PsuI RGATCY 2 cut(s) 374, 484
RsaI GTAC 2 cut(s) 1074, 1748
RsaNI GTAC 2 cut(s) 1073, 1747
RseI CAYNNNNRTG 2 cut(s) 1692, 1933
SaqAI TTAA 7 cut(s) 147, 597, 612, 741, 852, 896, 1359
SatI GCNGC 3 cut(s) 813, 1626, 1849
ScaI AGTACT 1 cut(s) 1074
SchI GAGTC 3 cut(s) 216, 397, 940
SduI GDGCHC 3 cut(s) 49, 1734, 1743
SfaNI GCATC 7 cut(s) 162, 400, 552, 682, 1477, 1577, 1696
SfcI CTRYAG 1 cut(s) 167
SinI GGWCC 8 cut(s) 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854
SmiMI CAYNNNNRTG 2 cut(s) 1692, 1933
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
SphI GCATGC 1 cut(s) 825
Sse9I AATT 9 cut(s) 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 3 cut(s) 551, 1221, 1783
SspMI CTAG 4 cut(s) 321, 531, 1536, 1632
StuI AGGCCT 1 cut(s) 967
StyI CCWWGG 6 cut(s) 931, 955, 1125, 1201, 1631, 1857
TaaI ACNGT 2 cut(s) 660, 980
TaiI ACGT 3 cut(s) 1283, 1395, 1800
TaqI TCGA 3 cut(s) 1291, 1528, 1888
TasI AATT 9 cut(s) 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346
TatI WGTACW 1 cut(s) 1072
TfiI GAWTC 4 cut(s) 473, 911, 1541, 1649
Tru1I TTAA 7 cut(s) 147, 597, 612, 741, 852, 896, 1359
Tru9I TTAA 7 cut(s) 147, 597, 612, 741, 852, 896, 1359
TscAI CASTG 5 cut(s) 357, 663, 769, 813, 823
TseFI GTSAC 1 cut(s) 1793
TseI GCWGC 3 cut(s) 812, 1625, 1848
Tsp45I GTSAC 1 cut(s) 1793
TspGWI ACGGA 1 cut(s) 1320
TspRI CASTG 5 cut(s) 357, 663, 769, 813, 823
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 8 cut(s) 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854
XagI CCTNNNNNAGG 2 cut(s) 1230, 1678
XapI RAATTY 3 cut(s) 526, 624, 1030
XceI RCATGY 1 cut(s) 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 1631
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 4 cut(s) 321, 531, 1536, 1632
ZrmI AGTACT 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.