RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13190 |
| fragaria_vesca | FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170 |
| malus_domestica | MD13G1106000.v1.1 MD16G1106200.v1.1 |
| prunus_persica | Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 |
| pyrus_communis | pycom13g09200 pycom16g09030 |
| rosa_chinensis | RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371 |
| rosa_laevigata | RLG00000006849 RLG00000006850 |
| rosa_multiflora | Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00373810 Rroxscaffold_5G00373820 |
| rosa_rugosa | Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900 |
| rosa_samantha | Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900 |
| rosa_wichuraiana | Rw4G027260 Rw4G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 208 |
| Acc36I | ACCTGC | 3 cut(s) | 91, 208, 1842 |
| AccB1I | GGYRCC | 2 cut(s) | 187, 361 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 203 |
| AciI | CCGC | 3 cut(s) | 551, 1221, 1783 |
| AclWI | GGATC | 7 cut(s) | 348, 382, 737, 797, 1268, 1484, 1533 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 3 cut(s) | 526, 624, 1030 |
| AcuI | CTGAAG | 2 cut(s) | 270, 465 |
| AfaI | GTAC | 2 cut(s) | 1074, 1748 |
| AgsI | TTSAA | 3 cut(s) | 263, 308, 1839 |
| AjiI | CACGTC | 1 cut(s) | 1798 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 924, 956 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 728, 760, 1432, 1464 |
| AluBI | AGCT | 7 cut(s) | 55, 230, 266, 863, 1169, 1403, 1548 |
| AluI | AGCT | 7 cut(s) | 55, 230, 266, 863, 1169, 1403, 1548 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 1734 |
| Alw26I | GTCTC | 4 cut(s) | 720, 1011, 1767, 1912 |
| AlwI | GGATC | 7 cut(s) | 348, 382, 737, 797, 1268, 1484, 1533 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 283, 812 |
| AoxI | GGCC | 7 cut(s) | 3, 509, 934, 965, 1122, 1198, 1800 |
| ApeKI | GCWGC | 3 cut(s) | 812, 1625, 1848 |
| ApoI | RAATTY | 3 cut(s) | 526, 624, 1030 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 316 |
| AspA2I | CCTAGG | 1 cut(s) | 1631 |
| AsuC2I | CCSGG | 3 cut(s) | 294, 1251, 1817 |
| AsuHPI | GGTGA | 1 cut(s) | 1568 |
| AvaII | GGWCC | 8 cut(s) | 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854 |
| AvrII | CCTAGG | 1 cut(s) | 1631 |
| AxyI | CCTNAGG | 1 cut(s) | 183 |
| BanI | GGYRCC | 2 cut(s) | 187, 361 |
| BanII | GRGCYC | 1 cut(s) | 1743 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 1734 |
| BbvI | GCAGC | 3 cut(s) | 799, 1612, 1860 |
| BccI | CCATC | 9 cut(s) | 100, 526, 833, 898, 1252, 1429, 1438, 1556, 1936 |
| BceAI | ACGGC | 1 cut(s) | 439 |
| BclI | TGATCA | 1 cut(s) | 1876 |
| BcnI | CCSGG | 3 cut(s) | 294, 1251, 1817 |
| BcoDI | GTCTC | 4 cut(s) | 720, 1011, 1767, 1912 |
| BfaI | CTAG | 4 cut(s) | 321, 531, 1536, 1632 |
| BfmI | CTRYAG | 1 cut(s) | 167 |
| BfuAI | ACCTGC | 3 cut(s) | 91, 208, 1842 |
| BglII | AGATCT | 1 cut(s) | 484 |
| BisI | GCNGC | 3 cut(s) | 813, 1626, 1849 |
| BlnI | CCTAGG | 1 cut(s) | 1631 |
| BlsI | GCNGC | 3 cut(s) | 814, 1627, 1850 |
| BmcAI | AGTACT | 1 cut(s) | 1074 |
| Bme18I | GGWCC | 8 cut(s) | 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854 |
| BmgBI | CACGTC | 1 cut(s) | 1798 |
| BmiI | GGNNCC | 8 cut(s) | 76, 189, 363, 555, 1123, 1263, 1672, 1740 |
| BmrI | ACTGGG | 4 cut(s) | 344, 380, 501, 1720 |
| BmsI | GCATC | 7 cut(s) | 162, 400, 552, 682, 1477, 1577, 1696 |
| BmuI | ACTGGG | 4 cut(s) | 344, 380, 501, 1720 |
| BpmI | CTGGAG | 2 cut(s) | 531, 1533 |
| BpuEI | CTTGAG | 1 cut(s) | 399 |
| BpuMI | CCSGG | 3 cut(s) | 294, 1251, 1817 |
| BsaAI | YACGTR | 1 cut(s) | 1393 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1878, 1927 |
| BsaI | GGTCTC | 1 cut(s) | 1767 |
| Bse21I | CCTNAGG | 1 cut(s) | 183 |
| Bse3DI | GCAATG | 3 cut(s) | 220, 1371, 1869 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1878, 1927 |
| BseGI | GGATG | 4 cut(s) | 844, 1440, 1446, 1816 |
| BseJI | GATNNNNATC | 2 cut(s) | 1878, 1927 |
| BseMI | GCAATG | 3 cut(s) | 220, 1371, 1869 |
| BseRI | GAGGAG | 9 cut(s) | 23, 44, 47, 1131, 1197, 1308, 1377, 1696, 1930 |
| BseXI | GCAGC | 3 cut(s) | 799, 1612, 1860 |
| BseYI | CCCAGC | 5 cut(s) | 983, 1157, 1376, 1399, 1502 |
| BshFI | GGCC | 7 cut(s) | 5, 511, 936, 967, 1124, 1200, 1802 |
| BshNI | GGYRCC | 2 cut(s) | 187, 361 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 1734 |
| BsiSI | CCGG | 3 cut(s) | 293, 1250, 1816 |
| BslFI | GGGAC | 6 cut(s) | 454, 615, 1068, 1125, 1383, 1832 |
| BsmAI | GTCTC | 4 cut(s) | 720, 1011, 1767, 1912 |
| BsmBI | CGTCTC | 1 cut(s) | 1912 |
| BsmFI | GGGAC | 6 cut(s) | 454, 615, 1068, 1125, 1383, 1832 |
| BsmI | GAATGC | 2 cut(s) | 1249, 1341 |
| BsnI | GGCC | 7 cut(s) | 5, 511, 936, 967, 1124, 1200, 1802 |
| Bso31I | GGTCTC | 1 cut(s) | 1767 |
| Bsp1286I | GDGCHC | 3 cut(s) | 49, 1734, 1743 |
| Bsp19I | CCATGG | 1 cut(s) | 1125 |
| BspACI | CCGC | 3 cut(s) | 551, 1221, 1783 |
| BspANI | GGCC | 7 cut(s) | 5, 511, 936, 967, 1124, 1200, 1802 |
| BspHI | TCATGA | 2 cut(s) | 406, 1600 |
| BspLI | GGNNCC | 8 cut(s) | 76, 189, 363, 555, 1123, 1263, 1672, 1740 |
| BspMAI | CTGCAG | 1 cut(s) | 171 |
| BspMI | ACCTGC | 3 cut(s) | 91, 208, 1842 |
| BspPI | GGATC | 7 cut(s) | 348, 382, 737, 797, 1268, 1484, 1533 |
| BspT107I | GGYRCC | 2 cut(s) | 187, 361 |
| BspTNI | GGTCTC | 1 cut(s) | 1767 |
| BsrDI | GCAATG | 3 cut(s) | 220, 1371, 1869 |
| BssT1I | CCWWGG | 6 cut(s) | 931, 955, 1125, 1201, 1631, 1857 |
| Bst4CI | ACNGT | 2 cut(s) | 660, 980 |
| Bst6I | CTCTTC | 3 cut(s) | 21, 1837, 1907 |
| BstBAI | YACGTR | 1 cut(s) | 1393 |
| BstC8I | GCNNGC | 2 cut(s) | 567, 823 |
| BstDSI | CCRYGG | 1 cut(s) | 1125 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1230, 1678 |
| BstF5I | GGATG | 4 cut(s) | 844, 1440, 1446, 1816 |
| BstMAI | GTCTC | 4 cut(s) | 720, 1011, 1767, 1912 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 83, 818, 1130, 1382, 1738, 1789 |
| BstNSI | RCATGY | 1 cut(s) | 825 |
| BstSFI | CTRYAG | 1 cut(s) | 167 |
| BstV1I | GCAGC | 3 cut(s) | 799, 1612, 1860 |
| BstX2I | RGATCY | 2 cut(s) | 374, 484 |
| BstYI | RGATCY | 2 cut(s) | 374, 484 |
| Bsu36I | CCTNAGG | 1 cut(s) | 183 |
| BsuRI | GGCC | 7 cut(s) | 5, 511, 936, 967, 1124, 1200, 1802 |
| BtgI | CCRYGG | 1 cut(s) | 1125 |
| BtrI | CACGTC | 1 cut(s) | 1798 |
| BtsCI | GGATG | 4 cut(s) | 844, 1440, 1446, 1816 |
| BtsIMutI | CAGTG | 5 cut(s) | 357, 656, 769, 813, 823 |
| BveI | ACCTGC | 3 cut(s) | 91, 208, 1842 |
| Cac8I | GCNNGC | 2 cut(s) | 567, 823 |
| CaiI | CAGNNNCTG | 2 cut(s) | 283, 812 |
| CciI | TCATGA | 2 cut(s) | 406, 1600 |
| Csp6I | GTAC | 2 cut(s) | 1073, 1747 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 643, 678 |
| CviAII | CATG | 7 cut(s) | 407, 822, 1126, 1141, 1472, 1498, 1601 |
| CviQI | GTAC | 2 cut(s) | 1073, 1747 |
| DraI | TTTAAA | 1 cut(s) | 897 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 21, 1837, 1907 |
| EarI | CTCTTC | 3 cut(s) | 21, 1837, 1907 |
| EciI | GGCGGA | 1 cut(s) | 1798 |
| Eco130I | CCWWGG | 6 cut(s) | 931, 955, 1125, 1201, 1631, 1857 |
| Eco147I | AGGCCT | 1 cut(s) | 967 |
| Eco24I | GRGCYC | 1 cut(s) | 1743 |
| Eco31I | GGTCTC | 1 cut(s) | 1767 |
| Eco47I | GGWCC | 8 cut(s) | 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854 |
| Eco57I | CTGAAG | 2 cut(s) | 270, 465 |
| Eco81I | CCTNAGG | 1 cut(s) | 183 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1230, 1678 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1085, 1198, 1208, 1262 |
| EcoRI | GAATTC | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 6 cut(s) | 931, 955, 1125, 1201, 1631, 1857 |
| EcoT38I | GRGCYC | 1 cut(s) | 1743 |
| ErhI | CCWWGG | 6 cut(s) | 931, 955, 1125, 1201, 1631, 1857 |
| Esp3I | CGTCTC | 1 cut(s) | 1912 |
| FaeI | CATG | 7 cut(s) | 410, 825, 1129, 1144, 1475, 1501, 1604 |
| FaqI | GGGAC | 6 cut(s) | 454, 615, 1068, 1125, 1383, 1832 |
| FatI | CATG | 7 cut(s) | 406, 821, 1125, 1140, 1471, 1497, 1600 |
| FbaI | TGATCA | 1 cut(s) | 1876 |
| Fnu4HI | GCNGC | 3 cut(s) | 813, 1626, 1849 |
| FokI | GGATG | 4 cut(s) | 851, 1447, 1453, 1823 |
| FriOI | GRGCYC | 1 cut(s) | 1743 |
| Fsp4HI | GCNGC | 3 cut(s) | 813, 1626, 1849 |
| FspBI | CTAG | 4 cut(s) | 321, 531, 1536, 1632 |
| GluI | GCNGC | 3 cut(s) | 813, 1626, 1849 |
| GsaI | CCCAGC | 5 cut(s) | 987, 1161, 1380, 1403, 1506 |
| GsuI | CTGGAG | 2 cut(s) | 531, 1533 |
| HaeIII | GGCC | 7 cut(s) | 5, 511, 936, 967, 1124, 1200, 1802 |
| HapII | CCGG | 3 cut(s) | 293, 1250, 1816 |
| Hin1II | CATG | 7 cut(s) | 410, 825, 1129, 1144, 1475, 1501, 1604 |
| HinfI | GANTC | 7 cut(s) | 222, 403, 473, 911, 946, 1541, 1649 |
| HpaII | CCGG | 3 cut(s) | 293, 1250, 1816 |
| HphI | GGTGA | 1 cut(s) | 1568 |
| Hpy166II | GTNNAC | 5 cut(s) | 684, 1064, 1396, 1509, 1665 |
| Hpy188I | TCNGA | 9 cut(s) | 51, 234, 484, 945, 1573, 1654, 1678, 1723, 1933 |
| Hpy8I | GTNNAC | 5 cut(s) | 684, 1064, 1396, 1509, 1665 |
| HpyAV | CCTTC | 5 cut(s) | 152, 302, 331, 957, 1032 |
| HpyCH4III | ACNGT | 2 cut(s) | 660, 980 |
| HpyCH4IV | ACGT | 3 cut(s) | 1280, 1392, 1797 |
| HpyCH4V | TGCA | 9 cut(s) | 169, 175, 565, 821, 825, 1133, 1247, 1364, 1568 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 83, 818, 1130, 1382, 1738, 1789 |
| HpySE526I | ACGT | 3 cut(s) | 1280, 1392, 1797 |
| Hsp92II | CATG | 7 cut(s) | 410, 825, 1129, 1144, 1475, 1501, 1604 |
| Ksp22I | TGATCA | 1 cut(s) | 1876 |
| LmnI | GCTCC | 8 cut(s) | 10, 60, 74, 1166, 1390, 1729, 1738, 1789 |
| Lsp1109I | GCAGC | 3 cut(s) | 799, 1612, 1860 |
| LweI | GCATC | 7 cut(s) | 162, 400, 552, 682, 1477, 1577, 1696 |
| MaeI | CTAG | 4 cut(s) | 321, 531, 1536, 1632 |
| MaeII | ACGT | 3 cut(s) | 1280, 1392, 1797 |
| MaeIII | GTNAC | 3 cut(s) | 1301, 1766, 1793 |
| MfeI | CAATTG | 1 cut(s) | 636 |
| MflI | RGATCY | 2 cut(s) | 374, 484 |
| MhlI | GDGCHC | 3 cut(s) | 49, 1734, 1743 |
| MluCI | AATT | 9 cut(s) | 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346 |
| MlyI | GAGTC | 3 cut(s) | 216, 397, 940 |
| MmeI | TCCRAC | 5 cut(s) | 133, 1126, 1144, 1210, 1301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 316 |
| MseI | TTAA | 7 cut(s) | 147, 597, 612, 741, 852, 896, 1359 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1692, 1933 |
| MspA1I | CMGCKG | 1 cut(s) | 551 |
| MspI | CCGG | 3 cut(s) | 293, 1250, 1816 |
| MunI | CAATTG | 1 cut(s) | 636 |
| Mva1269I | GAATGC | 2 cut(s) | 1249, 1341 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 83, 818, 1130, 1382, 1738, 1789 |
| NciI | CCSGG | 3 cut(s) | 294, 1251, 1817 |
| NcoI | CCATGG | 1 cut(s) | 1125 |
| NlaIII | CATG | 7 cut(s) | 410, 825, 1129, 1144, 1475, 1501, 1604 |
| NlaIV | GGNNCC | 8 cut(s) | 76, 189, 363, 555, 1123, 1263, 1672, 1740 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 1 cut(s) | 1793 |
| NspI | RCATGY | 1 cut(s) | 825 |
| PaeI | GCATGC | 1 cut(s) | 825 |
| PagI | TCATGA | 2 cut(s) | 406, 1600 |
| PaqCI | CACCTGC | 1 cut(s) | 208 |
| PceI | AGGCCT | 1 cut(s) | 967 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 126 |
| PctI | GAATGC | 2 cut(s) | 1249, 1341 |
| PdmI | GAANNNNTTC | 1 cut(s) | 316 |
| PfeI | GAWTC | 4 cut(s) | 473, 911, 1541, 1649 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 203 |
| PfoI | TCCNGGA | 3 cut(s) | 292, 1210, 1330 |
| PkrI | GCNGC | 3 cut(s) | 814, 1627, 1850 |
| PleI | GAGTC | 3 cut(s) | 216, 397, 940 |
| PpsI | GAGTC | 3 cut(s) | 216, 397, 940 |
| Ppu21I | YACGTR | 1 cut(s) | 1393 |
| PpuMI | RGGWCCY | 3 cut(s) | 1085, 1208, 1262 |
| Psp5II | RGGWCCY | 3 cut(s) | 1085, 1208, 1262 |
| PspFI | CCCAGC | 5 cut(s) | 983, 1157, 1376, 1399, 1502 |
| PspN4I | GGNNCC | 8 cut(s) | 76, 189, 363, 555, 1123, 1263, 1672, 1740 |
| PspPPI | RGGWCCY | 3 cut(s) | 1085, 1208, 1262 |
| PstI | CTGCAG | 1 cut(s) | 171 |
| PstNI | CAGNNNCTG | 2 cut(s) | 283, 812 |
| PsuI | RGATCY | 2 cut(s) | 374, 484 |
| RsaI | GTAC | 2 cut(s) | 1074, 1748 |
| RsaNI | GTAC | 2 cut(s) | 1073, 1747 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1692, 1933 |
| SaqAI | TTAA | 7 cut(s) | 147, 597, 612, 741, 852, 896, 1359 |
| SatI | GCNGC | 3 cut(s) | 813, 1626, 1849 |
| ScaI | AGTACT | 1 cut(s) | 1074 |
| SchI | GAGTC | 3 cut(s) | 216, 397, 940 |
| SduI | GDGCHC | 3 cut(s) | 49, 1734, 1743 |
| SfaNI | GCATC | 7 cut(s) | 162, 400, 552, 682, 1477, 1577, 1696 |
| SfcI | CTRYAG | 1 cut(s) | 167 |
| SinI | GGWCC | 8 cut(s) | 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1692, 1933 |
| SmlI | CTYRAG | 1 cut(s) | 414 |
| SmoI | CTYRAG | 1 cut(s) | 414 |
| SphI | GCATGC | 1 cut(s) | 825 |
| Sse9I | AATT | 9 cut(s) | 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346 |
| SseBI | AGGCCT | 1 cut(s) | 967 |
| SsiI | CCGC | 3 cut(s) | 551, 1221, 1783 |
| SspMI | CTAG | 4 cut(s) | 321, 531, 1536, 1632 |
| StuI | AGGCCT | 1 cut(s) | 967 |
| StyI | CCWWGG | 6 cut(s) | 931, 955, 1125, 1201, 1631, 1857 |
| TaaI | ACNGT | 2 cut(s) | 660, 980 |
| TaiI | ACGT | 3 cut(s) | 1283, 1395, 1800 |
| TaqI | TCGA | 3 cut(s) | 1291, 1528, 1888 |
| TasI | AATT | 9 cut(s) | 498, 526, 624, 636, 738, 1003, 1030, 1048, 1346 |
| TatI | WGTACW | 1 cut(s) | 1072 |
| TfiI | GAWTC | 4 cut(s) | 473, 911, 1541, 1649 |
| Tru1I | TTAA | 7 cut(s) | 147, 597, 612, 741, 852, 896, 1359 |
| Tru9I | TTAA | 7 cut(s) | 147, 597, 612, 741, 852, 896, 1359 |
| TscAI | CASTG | 5 cut(s) | 357, 663, 769, 813, 823 |
| TseFI | GTSAC | 1 cut(s) | 1793 |
| TseI | GCWGC | 3 cut(s) | 812, 1625, 1848 |
| Tsp45I | GTSAC | 1 cut(s) | 1793 |
| TspGWI | ACGGA | 1 cut(s) | 1320 |
| TspRI | CASTG | 5 cut(s) | 357, 663, 769, 813, 823 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 203 |
| VpaK11BI | GGWCC | 8 cut(s) | 542, 1085, 1100, 1208, 1223, 1262, 1319, 1854 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1230, 1678 |
| XapI | RAATTY | 3 cut(s) | 526, 624, 1030 |
| XceI | RCATGY | 1 cut(s) | 825 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 661 |
| XmaJI | CCTAGG | 1 cut(s) | 1631 |
| XmnI | GAANNNNTTC | 1 cut(s) | 316 |
| XspI | CTAG | 4 cut(s) | 321, 531, 1536, 1632 |
| ZrmI | AGTACT | 1 cut(s) | 1074 |