RLG00000006850

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002110
Physical Location & Seq
Forward (+)
11071883 .. 11074804
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006850

Sequence Viewer

Length: 1974 bp
ATGGCTGAGGAGCAAATAAATTTTGAAGAGGAGGAATATGGAGGTGCTCAGAAGCTCCAATATCAGGGAAGTGGAGCCATATCTGCGCTTGCAGATGAAGAACCAATGGTTGAAGATGATGAGTATGATGATCTCTATGATGATGTTAATGTTGGGGAGGGTTTCCTGCAGATGCATCGATCTGAGGCACCAGTCACTGCTAGTGGTGTTGGGAATGGAGGACTCCAAGCTCAGAAAACTGATGTTCCCGAACTAAGAGTTCAAGCCAGTGCTTCTCAGGAAATGAAAATTCCGGGGGTTTCAGTTGGAGGAAATTATTCTAGTGTTCCTGAACAGAAGGTTCAGCCACCAGTCGCTAACGTGCCTGAAACTCAAGTCAGGCATATGGGGTTTCAGGGGTCAACAACTATGCCCTCCACTGTTGGTGCTGATTCTTTGGAAATTACTGCAAAATTTGCAAACGAGCCTCTTCCATCAATGAATTCTGGCACCACCGGTCCTTCAGCTGTTACACAGGTGCCTGCTAATCAAATGAATATGAAGGTCAATCTTAATCGTCCAATGGCTAATGAAAACCAAATCCGTCCTCCAATTGAGAATGGTTCGGCCACGTTATTTGTGGGAGATTTACATTGGTGGACAACTGATGCTGAACTGGAAAGTGTTTTATCTCAGTTTGGGAGGGTGAAGGAAATTAAGTTTTTTGATGAAAGAGCCAGTGGTAAATCCAAAGGTTATTGTCAGGTAGATTTTTATGATCCCGCGGCTGCCAGTGCATGCAAAGAGGGAATGGATGGTTATGTTTTTAATGGGAGAGCTTGTGTTGTGGCCTTTGCTACTTCACAAACTTTAAAGCAGATGGGAGCTAATTATGTGAACAAATCCCAAGGGCAGGTTCAGACTCAGCCCCAAGGGAGAAGGCCCATGAATGATGGTGCTGGGAGAGGGGGAGGCATGAATTTTCAAGGTGGAGACACGGGGAGAAATTTTGGGAGGGGTAATTGGGGGCGAGGTGGACAGGGAGTACCCAACAGAGGTCCTGGTGGACCAGGCCGGGGAAGAGGAGGGGCCATGGGTGCAAAGAACATGGTTGGGAATAATGCTGGGGTTGGAGCTGGTGCTAATGGAGGAGGCTATGGACAGGGCCTTGCAGGTCCTGGATTTGGCGGTCCTGTGGGAGGTATGATGAATGCACCTGGTATGATGGGTCCTGGGTTTGATCCAACATATATGGGTCGAGGAGGTGGTTACGGAGGGTTCCCTGGTCCTGGTTTTCCTGGAATGCTTCCTCAGTTTCCTGGGGTTAATGCAATGGGACTTGCTGGGGTTGCTCCTCATGTAAACCCAGCTTTCTTTGGCAGGGGAATGGCAACGAATGGGATGGGGATGATGGGTTCTTCTGGAATGGAGGGGCATCATGCCCCTATGTGGAATGATCCAAGTTTGGGTGGGTGGGGAGGAGAAGAACAGGATCGAAGAACTAGGGAGTCAAGCTATGGGGGTGATGATGGTGCTTCTGAGTATGGAAACTATGTAGAGGCAAATCATGAGAAATCAGCTAAGTCAAGTGCTGCCTCAAGGGAAAGAGAACGGGGATCTGAGCGTGAGTGGACAGGAACCTCTGAGAGGAGGCATCGTGATGAGAGAGAACAAGACTTGGACAGGTCTGAAAGGGAGCACCGGGAGCCCAGGTATAAAGAAGAAAAAGATAGTTACAGAGATCATCGTCGAAGAGAGCGTGACGTGGGTTATGATGATGACTGGGACAGAGGACAATCTTCTTCAAGACCTCGCAGTAGGTCCAAAGCAATGCCGGAAGATGATCATCGTTCTCGATCAAGGGATGTGGATTATGGGAAGAGGAGACGATTGCCATCTGACTGCATCTTCATCCATGTTTCGATGGCCCCACCTGCAAACGTGCTTCTTGATGAAGAAGGAGTAGAGTGGGAAACTCTTTCTTTTCATGCTTGA

Protein Analysis

658

Amino Acids

70.66

Weight (kDa)

5.3

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 205 - 274 1.8e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1921
Acc36I ACCTGC 3 cut(s) 883, 1142, 1921
AccB1I GGYRCC 3 cut(s) 187, 488, 517
AccII CGCG 1 cut(s) 764
AciI CCGC 3 cut(s) 762, 764, 1167
AclWI GGATC 5 cut(s) 752, 1214, 1430, 1479, 1603
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 6 cut(s) 19, 288, 452, 481, 958, 985
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 1026
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 5 cut(s) 26, 113, 263, 965, 1785
AjiI CACGTC 1 cut(s) 1744
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AloI GAACNNNNNNTCC 2 cut(s) 1378, 1410
AluBI AGCT 9 cut(s) 55, 230, 506, 818, 866, 1115, 1349, 1494, 1559
AluI AGCT 9 cut(s) 55, 230, 506, 818, 866, 1115, 1349, 1494, 1559
Alw21I GWGCWC 2 cut(s) 49, 1680
Alw26I GTCTC 2 cut(s) 966, 1858
AlwI GGATC 5 cut(s) 752, 1214, 1430, 1479, 1603
AlwNI CAGNNNCTG 2 cut(s) 197, 1157
AoxI GGCC 7 cut(s) 606, 828, 920, 1051, 1068, 1144, 1905
ApeKI GCWGC 2 cut(s) 767, 1571
ApoI RAATTY 6 cut(s) 19, 288, 452, 481, 958, 985
AsiGI ACCGGT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 3 cut(s) 294, 1055, 1682
AsuHPI GGTGA 2 cut(s) 697, 1514
AvaII GGWCC 8 cut(s) 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800
BanI GGYRCC 3 cut(s) 187, 488, 517
BanII GRGCYC 1 cut(s) 1689
Bbv12I GWGCWC 2 cut(s) 49, 1680
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 754, 1558
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BclI TGATCA 1 cut(s) 1822
BcnI CCSGG 3 cut(s) 294, 1055, 1682
BcoDI GTCTC 2 cut(s) 966, 1858
BfaI CTAG 3 cut(s) 201, 321, 1482
BfmI CTRYAG 1 cut(s) 167
BfuAI ACCTGC 3 cut(s) 883, 1142, 1921
BisI GCNGC 3 cut(s) 765, 768, 1572
BlsI GCNGC 3 cut(s) 766, 769, 1573
Bme18I GGWCC 8 cut(s) 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800
BmgBI CACGTC 1 cut(s) 1744
BmrI ACTGGG 1 cut(s) 1771
BmsI GCATC 6 cut(s) 162, 184, 637, 1423, 1642, 1893
BmuI ACTGGG 1 cut(s) 1771
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 357, 1561
BpuMI CCSGG 3 cut(s) 294, 1055, 1682
Bsa29I ATCGAT 1 cut(s) 178
BsaBI GATNNNNATC 2 cut(s) 1824, 1873
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 6 cut(s) 805, 835, 1621, 1651, 1676, 1706
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 7 cut(s) 191, 267, 350, 660, 717, 771, 1766
Bse3DI GCAATG 2 cut(s) 1317, 1815
Bse8I GATNNNNATC 2 cut(s) 1824, 1873
BseCI ATCGAT 1 cut(s) 178
BseGI GGATG 5 cut(s) 799, 1386, 1392, 1849, 1890
BseJI GATNNNNATC 2 cut(s) 1824, 1873
BseMI GCAATG 2 cut(s) 1317, 1815
BseNI ACTGG 7 cut(s) 191, 267, 350, 660, 717, 771, 1766
BseRI GAGGAG 9 cut(s) 23, 44, 1077, 1143, 1254, 1323, 1473, 1642, 1876
BseXI GCAGC 2 cut(s) 754, 1558
BseYI CCCAGC 4 cut(s) 938, 1103, 1322, 1345
Bsh1236I CGCG 1 cut(s) 764
BshFI GGCC 7 cut(s) 608, 830, 922, 1053, 1070, 1146, 1907
BshNI GGYRCC 3 cut(s) 187, 488, 517
BshTI ACCGGT 1 cut(s) 494
BshVI ATCGAT 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 49, 1680
BsiSI CCGG 5 cut(s) 293, 495, 1054, 1681, 1814
BslFI GGGAC 2 cut(s) 1329, 1778
BsmAI GTCTC 2 cut(s) 966, 1858
BsmBI CGTCTC 1 cut(s) 1858
BsmFI GGGAC 2 cut(s) 1329, 1778
BsmI GAATGC 2 cut(s) 1195, 1287
BsnI GGCC 7 cut(s) 608, 830, 922, 1053, 1070, 1146, 1907
Bsp1286I GDGCHC 3 cut(s) 49, 1680, 1689
Bsp19I CCATGG 1 cut(s) 1071
BspACI CCGC 3 cut(s) 762, 764, 1167
BspANI GGCC 7 cut(s) 608, 830, 922, 1053, 1070, 1146, 1907
BspDI ATCGAT 1 cut(s) 178
BspFNI CGCG 1 cut(s) 764
BspHI TCATGA 1 cut(s) 1546
BspMAI CTGCAG 1 cut(s) 171
BspMI ACCTGC 3 cut(s) 883, 1142, 1921
BspPI GGATC 5 cut(s) 752, 1214, 1430, 1479, 1603
BspT107I GGYRCC 3 cut(s) 187, 488, 517
BsrDI GCAATG 2 cut(s) 1317, 1815
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 7 cut(s) 191, 267, 350, 660, 717, 771, 1766
BssAI RCCGGY 1 cut(s) 494
BssT1I CCWWGG 3 cut(s) 886, 910, 1071
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 5 cut(s) 21, 474, 1054, 1726, 1853
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 90, 522, 778
BstDSI CCRYGG 2 cut(s) 762, 1071
BstENI CCTNNNNNAGG 2 cut(s) 1176, 1624
BstF5I GGATG 5 cut(s) 799, 1386, 1392, 1849, 1890
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 966, 1858
BstMWI GCNNNNNNNGC 7 cut(s) 83, 455, 773, 1076, 1328, 1684, 1913
BstNSI RCATGY 1 cut(s) 780
BstSFI CTRYAG 1 cut(s) 167
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 754, 1558
BstX2I RGATCY 1 cut(s) 1595
BstYI RGATCY 1 cut(s) 1595
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 7 cut(s) 608, 830, 922, 1053, 1070, 1146, 1907
BsuTUI ATCGAT 1 cut(s) 178
BtgI CCRYGG 2 cut(s) 762, 1071
BtrI CACGTC 1 cut(s) 1744
BtsCI GGATG 5 cut(s) 799, 1386, 1392, 1849, 1890
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 5 cut(s) 195, 274, 417, 724, 778
BveI ACCTGC 3 cut(s) 883, 1142, 1921
Cac8I GCNNGC 3 cut(s) 90, 522, 778
CaiI CAGNNNCTG 2 cut(s) 197, 1157
CciI TCATGA 1 cut(s) 1546
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 494
Cfr42I CCGCGG 1 cut(s) 765
ClaI ATCGAT 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 1195
Csp6I GTAC 1 cut(s) 1025
CspAI ACCGGT 1 cut(s) 494
CspCI CAANNNNNGTGG 4 cut(s) 598, 633, 1827, 1862
CviQI GTAC 1 cut(s) 1025
DraI TTTAAA 1 cut(s) 852
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 5 cut(s) 21, 474, 1054, 1726, 1853
EarI CTCTTC 5 cut(s) 21, 474, 1054, 1726, 1853
Eco130I CCWWGG 3 cut(s) 886, 910, 1071
Eco24I GRGCYC 1 cut(s) 1689
Eco47I GGWCC 8 cut(s) 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800
Eco57I CTGAAG 1 cut(s) 486
EcoNI CCTNNNNNAGG 2 cut(s) 1176, 1624
EcoO109I RGGNCCY 4 cut(s) 1037, 1144, 1154, 1208
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 3 cut(s) 886, 910, 1071
EcoT22I ATGCAT 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 1689
ErhI CCWWGG 3 cut(s) 886, 910, 1071
Esp3I CGTCTC 1 cut(s) 1858
FaqI GGGAC 2 cut(s) 1329, 1778
FauI CCCGC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 1822
Fnu4HI GCNGC 3 cut(s) 765, 768, 1572
FokI GGATG 5 cut(s) 806, 1393, 1399, 1856, 1877
FriOI GRGCYC 1 cut(s) 1689
Fsp4HI GCNGC 3 cut(s) 765, 768, 1572
FspBI CTAG 3 cut(s) 201, 321, 1482
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 765, 768, 1572
GsaI CCCAGC 4 cut(s) 942, 1107, 1326, 1349
HaeIII GGCC 7 cut(s) 608, 830, 922, 1053, 1070, 1146, 1907
HapII CCGG 5 cut(s) 293, 495, 1054, 1681, 1814
HhaI GCGC 1 cut(s) 88
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 4 cut(s) 222, 431, 901, 1487
HpaII CCGG 5 cut(s) 293, 495, 1054, 1681, 1814
HphI GGTGA 2 cut(s) 697, 1514
Hpy166II GTNNAC 7 cut(s) 402, 639, 877, 1016, 1046, 1342, 1611
Hpy188I TCNGA 9 cut(s) 51, 184, 234, 900, 1519, 1600, 1624, 1669, 1879
Hpy188III TCNNGA 9 cut(s) 248, 278, 329, 1401, 1547, 1637, 1785, 1833, 1928
Hpy8I GTNNAC 7 cut(s) 402, 639, 877, 1016, 1046, 1342, 1611
Hpy99I CGWCG 1 cut(s) 1731
HpyAV CCTTC 6 cut(s) 331, 510, 535, 682, 912, 1931
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 4 cut(s) 360, 611, 1743, 1920
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 455, 773, 1076, 1328, 1684, 1913
HpySE526I ACGT 4 cut(s) 360, 611, 1743, 1920
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 1822
KspI CCGCGG 1 cut(s) 765
LmnI GCTCC 8 cut(s) 10, 60, 74, 863, 1112, 1336, 1675, 1684
Lsp1109I GCAGC 2 cut(s) 754, 1558
LweI GCATC 6 cut(s) 162, 184, 637, 1423, 1642, 1893
MabI ACCWGGT 1 cut(s) 1195
MaeI CTAG 3 cut(s) 201, 321, 1482
MaeII ACGT 4 cut(s) 360, 611, 1743, 1920
MaeIII GTNAC 5 cut(s) 193, 508, 1247, 1712, 1739
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 1595
MhlI GDGCHC 3 cut(s) 49, 1680, 1689
MlyI GAGTC 3 cut(s) 216, 895, 1496
MmeI TCCRAC 3 cut(s) 286, 1090, 1247
Mph1103I ATGCAT 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 6 cut(s) 147, 552, 696, 807, 851, 1305
MslI CAYNNNNRTG 1 cut(s) 1638
MspA1I CMGCKG 2 cut(s) 506, 764
MspI CCGG 5 cut(s) 293, 495, 1054, 1681, 1814
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 2 cut(s) 1195, 1287
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 7 cut(s) 83, 455, 773, 1076, 1328, 1684, 1913
NciI CCSGG 3 cut(s) 294, 1055, 1682
NcoI CCATGG 1 cut(s) 1071
NdeI CATATG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 193, 1739
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 780
PaeI GCATGC 1 cut(s) 780
PagI TCATGA 1 cut(s) 1546
PaqCI CACCTGC 1 cut(s) 1921
PcsI WCGNNNNNNNCGW 1 cut(s) 1735
PctI GAATGC 2 cut(s) 1195, 1287
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 431
PfoI TCCNGGA 2 cut(s) 1156, 1276
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 3 cut(s) 766, 769, 1573
PleI GAGTC 3 cut(s) 216, 895, 1495
PpsI GAGTC 3 cut(s) 216, 895, 1495
PpuMI RGGWCCY 3 cut(s) 1037, 1154, 1208
Psp5II RGGWCCY 3 cut(s) 1037, 1154, 1208
PspFI CCCAGC 4 cut(s) 938, 1103, 1322, 1345
PspPPI RGGWCCY 3 cut(s) 1037, 1154, 1208
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 2 cut(s) 197, 1157
PsuI RGATCY 1 cut(s) 1595
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
RseI CAYNNNNRTG 1 cut(s) 1638
SacII CCGCGG 1 cut(s) 765
SaqAI TTAA 6 cut(s) 147, 552, 696, 807, 851, 1305
SatI GCNGC 3 cut(s) 765, 768, 1572
SchI GAGTC 3 cut(s) 216, 895, 1496
SduI GDGCHC 3 cut(s) 49, 1680, 1689
SexAI ACCWGGT 1 cut(s) 1195
SfaNI GCATC 6 cut(s) 162, 184, 637, 1423, 1642, 1893
SfcI CTRYAG 1 cut(s) 167
Sfr303I CCGCGG 1 cut(s) 765
SgrBI CCGCGG 1 cut(s) 765
SinI GGWCC 8 cut(s) 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800
SmiMI CAYNNNNRTG 1 cut(s) 1638
SmlI CTYRAG 2 cut(s) 372, 1576
SmoI CTYRAG 2 cut(s) 372, 1576
SphI GCATGC 1 cut(s) 780
SsiI CCGC 3 cut(s) 762, 764, 1167
SspMI CTAG 3 cut(s) 201, 321, 1482
StyI CCWWGG 3 cut(s) 886, 910, 1071
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 4 cut(s) 363, 614, 1746, 1923
TaqI TCGA 6 cut(s) 178, 1237, 1474, 1729, 1834, 1901
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 6 cut(s) 147, 552, 696, 807, 851, 1305
Tru9I TTAA 6 cut(s) 147, 552, 696, 807, 851, 1305
TscAI CASTG 5 cut(s) 202, 274, 424, 724, 778
TseFI GTSAC 2 cut(s) 193, 1739
TseI GCWGC 2 cut(s) 767, 1571
Tsp45I GTSAC 2 cut(s) 193, 1739
TspGWI ACGGA 2 cut(s) 572, 1266
TspRI CASTG 5 cut(s) 202, 274, 424, 724, 778
VpaK11BI GGWCC 8 cut(s) 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800
XagI CCTNNNNNAGG 2 cut(s) 1176, 1624
XapI RAATTY 6 cut(s) 19, 288, 452, 481, 958, 985
XceI RCATGY 1 cut(s) 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 201, 321, 1482
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.