Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002110

Physical Location & Seq

Genomic Coordinates Forward (+)

43017505 .. 43018610

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0257400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCCTCTGACATCAAAGCCAACAACAGCAACGGACCTGAAGCGGCATTTTCGTCGAATTTAGTTTTTGAACAAGGGCTTCAATGTTCAACAGCGTACTCCAGATCGCTTTCTGTTTTCCAAGGAGACAGCAACAAGGTCTCAATGGGTGGTCCATGGAGCTTCAATCGAGCCTTGGTGGTGCTACAACCATACAATGGAGTTTCCCCTCTGCAATCTGTGGAGATGCAGGACTTGTTCTTTTGGGTCTGCATCACCGGCCAATATGCCGCCAACCCAGTGGGCAGATCCTTATTTGGTGGAGTTGACTCAAGCAAGACCTGTAGAGTTGTGGTCATTCGCAGTGCAGATACAAGACCAGCTAGTGATGATGAGTCGCTTGCTGTAGTACCTGCAGAGACTGAGAATCAATCAAAGCGGGAACGACCCTTTACCTCCCCAAAGAAACTGAAATGTCTTATGTCAGACTTGTCGGAAGGAAGAACAAGTCCAGTTGCTCCCATAAAAAATGTAAAACTGCCGGAATTCCCCATTAAATTCAGTGCCAAATCTCTCAGACTCGTGGAAACACCAGGAGGCATGTTGGTGCCTTTAGAGGTGATGATGCCAAAGCCTGTACAGGTTGAGCTGCTAGTTGCAAAGAAGAAAAGAGGCCGGCCTTTGGGGTCCAAAAACCAAAAACCTAAATCCAAGAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

25.31

Weight (kDa)

9.69

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13190
fragaria_vesca	FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170
malus_domestica	MD13G1106000.v1.1 MD16G1106200.v1.1
prunus_persica	Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1
pyrus_communis	pycom13g09200 pycom16g09030
rosa_chinensis	RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371
rosa_laevigata	RLG00000006849 RLG00000006850
rosa_multiflora	Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013
rosa_roxburghii	Rroxscaffold_5G00373810 Rroxscaffold_5G00373820
rosa_rugosa	Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900
rosa_samantha	Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900
rosa_wichuraiana	Rw4G027260 Rw4G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	3 cut(s)	44, 270, 418
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	58, 524, 536
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	3 cut(s)	98, 390, 618
AfiI	CCNNNNNNNGG	2 cut(s)	197, 661
AgsI	TTSAA	4 cut(s)	71, 83, 90, 166
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	3 cut(s)	162, 362, 628
AluI	AGCT	3 cut(s)	162, 362, 628
Alw26I	GTCTC	3 cut(s)	120, 145, 392
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	4 cut(s)	3, 259, 652, 656
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	3 cut(s)	58, 524, 536
AspS9I	GGNCC	3 cut(s)	35, 152, 666
AsuHPI	GGTGA	2 cut(s)	247, 610
AvaII	GGWCC	3 cut(s)	35, 152, 666
BanI	GGYRCC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	615
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	120, 145, 392
BfaI	CTAG	2 cut(s)	363, 632
BfmI	CTRYAG	3 cut(s)	322, 384, 393
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	3 cut(s)	45, 270, 629
BlsI	GCNGC	3 cut(s)	46, 271, 630
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	3 cut(s)	35, 152, 666
BmgT120I	GGNCC	3 cut(s)	35, 152, 666
BmiI	GGNNCC	2 cut(s)	588, 667
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	3 cut(s)	216, 261, 594
BmuI	ACTGGG	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	121, 155, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 661
Bse118I	RCCGGY	2 cut(s)	257, 654
Bse1I	ACTGG	2 cut(s)	278, 491
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	121, 155, 174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 661
BseMII	CTCAG	2 cut(s)	393, 568
BseNI	ACTGG	2 cut(s)	278, 491
BseXI	GCAGC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	366
BshFI	GGCC	4 cut(s)	5, 261, 654, 658
BshNI	GGYRCC	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	258, 521, 655
BslI	CCNNNNNNNGG	2 cut(s)	197, 661
BsmAI	GTCTC	3 cut(s)	120, 145, 392
BsnI	GGCC	4 cut(s)	5, 261, 654, 658
Bso31I	GGTCTC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	104, 287
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	3 cut(s)	44, 270, 418
BspANI	GGCC	4 cut(s)	5, 261, 654, 658
BspCNI	CTCAG	2 cut(s)	394, 567
BspLI	GGNNCC	2 cut(s)	588, 667
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	257, 654
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	278, 491
BssAI	RCCGGY	2 cut(s)	257, 654
BssECI	CCNNGG	3 cut(s)	121, 155, 174
BssMI	GATC	2 cut(s)	104, 287
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	3 cut(s)	121, 155, 174
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	573
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	381, 656
BstDEI	CTNAG	2 cut(s)	402, 554
BstDSI	CCRYGG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	107, 290
BstMAI	GTCTC	3 cut(s)	120, 145, 392
BstMBI	GATC	2 cut(s)	104, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	3 cut(s)	322, 384, 393
BstV1I	GCAGC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	5, 261, 654, 658
BtgI	CCRYGG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	285, 349, 547
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	381, 656
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr10I	RCCGGY	2 cut(s)	257, 654
Cfr13I	GGNCC	3 cut(s)	35, 152, 666
Csp6I	GTAC	3 cut(s)	97, 389, 617
CviAII	CATG	2 cut(s)	156, 580
CviQI	GTAC	3 cut(s)	97, 389, 617
DdeI	CTNAG	2 cut(s)	402, 554
DpnI	GATC	2 cut(s)	106, 289
DpnII	GATC	2 cut(s)	104, 287
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	121, 155, 174
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	3 cut(s)	35, 152, 666
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	121, 155, 174
ErhI	CCWWGG	3 cut(s)	121, 155, 174
FaeI	CATG	2 cut(s)	159, 583
FaiI	YATR	6 cut(s)	157, 193, 267, 461, 503, 581
FatI	CATG	2 cut(s)	155, 579
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	45, 270, 629
FseI	GGCCGGCC	1 cut(s)	658
Fsp4HI	GCNGC	3 cut(s)	45, 270, 629
FspBI	CTAG	2 cut(s)	363, 632
GluI	GCNGC	3 cut(s)	45, 270, 629
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	5, 261, 654, 658
HapII	CCGG	3 cut(s)	258, 521, 655
Hin1II	CATG	2 cut(s)	159, 583
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	308, 374, 406, 558
HpaII	CCGG	3 cut(s)	258, 521, 655
HphI	GGTGA	2 cut(s)	247, 610
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	10, 466, 475, 557
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	470, 688
HpyCH4V	TGCA	6 cut(s)	214, 229, 252, 347, 395, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	402, 554
Hsp92II	CATG	2 cut(s)	159, 583
KroI	GCCGGC	1 cut(s)	654
KroNI	GCCGGC	1 cut(s)	656
Kzo9I	GATC	2 cut(s)	104, 287
LmnI	GCTCC	2 cut(s)	159, 502
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	3 cut(s)	216, 261, 594
MaeI	CTAG	2 cut(s)	363, 632
MalI	GATC	2 cut(s)	106, 289
MboI	GATC	2 cut(s)	104, 287
MboII	GAAGA	2 cut(s)	492, 655
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	58, 524, 536
MlyI	GAGTC	3 cut(s)	302, 383, 552
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	6 cut(s)	16, 219, 445, 569, 589, 644
MroNI	GCCGGC	1 cut(s)	654
MseI	TTAA	2 cut(s)	534, 700
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	3 cut(s)	258, 521, 655
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	1 cut(s)	258
NaeI	GCCGGC	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	104, 287
NgoMIV	GCCGGC	1 cut(s)	654
NlaIII	CATG	2 cut(s)	159, 583
NlaIV	GGNNCC	2 cut(s)	588, 667
NspI	RCATGY	1 cut(s)	583
PdiI	GCCGGC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	406
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	46, 271, 630
PleI	GAGTC	3 cut(s)	302, 382, 552
PpsI	GAGTC	3 cut(s)	302, 382, 552
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	588, 667
PspPI	GGNCC	3 cut(s)	35, 152, 666
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	287
RigI	GGCCGGCC	1 cut(s)	658
RsaI	GTAC	3 cut(s)	98, 390, 618
RsaNI	GTAC	3 cut(s)	97, 389, 617
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	534, 700
SatI	GCNGC	3 cut(s)	45, 270, 629
Sau3AI	GATC	2 cut(s)	104, 287
Sau96I	GGNCC	3 cut(s)	35, 152, 666
SchI	GAGTC	3 cut(s)	302, 383, 552
ScrFI	CCNGG	1 cut(s)	573
SfaNI	GCATC	3 cut(s)	216, 261, 594
SfcI	CTRYAG	3 cut(s)	322, 384, 393
SinI	GGWCC	3 cut(s)	35, 152, 666
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	58, 524, 536
SsiI	CCGC	3 cut(s)	44, 270, 418
SspMI	CTAG	2 cut(s)	363, 632
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	3 cut(s)	121, 155, 174
TaqI	TCGA	2 cut(s)	56, 169
TasI	AATT	3 cut(s)	58, 524, 536
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	2 cut(s)	47, 272
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	2 cut(s)	534, 700
Tru9I	TTAA	2 cut(s)	534, 700
TscAI	CASTG	3 cut(s)	285, 349, 547
TseI	GCWGC	1 cut(s)	628
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	285, 349, 547
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	3 cut(s)	35, 152, 666
XapI	RAATTY	3 cut(s)	58, 524, 536
XceI	RCATGY	1 cut(s)	583
XspI	CTAG	2 cut(s)	363, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.