RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13190 |
| fragaria_vesca | FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170 |
| malus_domestica | MD13G1106000.v1.1 MD16G1106200.v1.1 |
| prunus_persica | Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 |
| pyrus_communis | pycom13g09200 pycom16g09030 |
| rosa_chinensis | RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371 |
| rosa_laevigata | RLG00000006849 RLG00000006850 |
| rosa_multiflora | Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00373810 Rroxscaffold_5G00373820 |
| rosa_rugosa | Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900 |
| rosa_samantha | Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900 |
| rosa_wichuraiana | Rw4G027260 Rw4G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 36 |
| AfaI | GTAC | 1 cut(s) | 261 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 234 |
| AflIII | ACRYGT | 1 cut(s) | 39 |
| AgsI | TTSAA | 3 cut(s) | 58, 131, 181 |
| AluBI | AGCT | 2 cut(s) | 151, 185 |
| AluI | AGCT | 2 cut(s) | 151, 185 |
| AoxI | GGCC | 1 cut(s) | 119 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| BccI | CCATC | 1 cut(s) | 21 |
| BfaI | CTAG | 2 cut(s) | 152, 186 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BoxI | GACNNNNGTC | 1 cut(s) | 42 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 234 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 234 |
| BseMII | CTCAG | 1 cut(s) | 207 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BshFI | GGCC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 234 |
| BsnI | GGCC | 1 cut(s) | 121 |
| BspANI | GGCC | 1 cut(s) | 121 |
| BspCNI | CTCAG | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 137, 232 |
| BstDEI | CTNAG | 2 cut(s) | 147, 216 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstNSI | RCATGY | 1 cut(s) | 43 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 42 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 20 |
| BsuRI | GGCC | 1 cut(s) | 121 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BtsIMutI | CAGTG | 2 cut(s) | 142, 228 |
| Csp6I | GTAC | 1 cut(s) | 260 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 3 cut(s) | 121, 151, 185 |
| CviKI_1 | RGCY | 3 cut(s) | 121, 151, 185 |
| CviQI | GTAC | 1 cut(s) | 260 |
| DdeI | CTNAG | 2 cut(s) | 147, 216 |
| Eco147I | AGGCCT | 1 cut(s) | 121 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 6 cut(s) | 41, 85, 87, 96, 174, 197 |
| FatI | CATG | 1 cut(s) | 39 |
| FauNDI | CATATG | 1 cut(s) | 85 |
| FblI | GTMKAC | 1 cut(s) | 36 |
| FokI | GGATG | 1 cut(s) | 122 |
| FspBI | CTAG | 2 cut(s) | 152, 186 |
| HaeIII | GGCC | 1 cut(s) | 121 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HinfI | GANTC | 2 cut(s) | 80, 155 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 2 cut(s) | 37, 140 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 217 |
| Hpy8I | GTNNAC | 2 cut(s) | 37, 140 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 137, 232 |
| HpyCH4V | TGCA | 1 cut(s) | 166 |
| HpyF3I | CTNAG | 2 cut(s) | 147, 216 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 2 cut(s) | 152, 186 |
| MaeIII | GTNAC | 1 cut(s) | 219 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MnlI | CCTC | 5 cut(s) | 55, 70, 100, 111, 276 |
| MseI | TTAA | 1 cut(s) | 274 |
| NdeI | CATATG | 1 cut(s) | 85 |
| NlaIII | CATG | 1 cut(s) | 43 |
| NmeAIII | GCCGAG | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 43 |
| PceI | AGGCCT | 1 cut(s) | 121 |
| PciI | ACATGT | 1 cut(s) | 39 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| PscI | ACATGT | 1 cut(s) | 39 |
| PshAI | GACNNNNGTC | 1 cut(s) | 42 |
| RsaI | GTAC | 1 cut(s) | 261 |
| RsaNI | GTAC | 1 cut(s) | 260 |
| SaqAI | TTAA | 1 cut(s) | 274 |
| SchI | GAGTC | 1 cut(s) | 89 |
| SetI | ASST | 3 cut(s) | 153, 187, 191 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SgeI | CNNG | 8 cut(s) | 29, 52, 59, 127, 164, 190, 198, 219 |
| SseBI | AGGCCT | 1 cut(s) | 121 |
| SspMI | CTAG | 2 cut(s) | 152, 186 |
| StuI | AGGCCT | 1 cut(s) | 121 |
| TaaI | ACNGT | 3 cut(s) | 34, 137, 232 |
| TatI | WGTACW | 1 cut(s) | 259 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 274 |
| Tru9I | TTAA | 1 cut(s) | 274 |
| TscAI | CASTG | 2 cut(s) | 142, 235 |
| TspDTI | ATGAA | 3 cut(s) | 83, 147, 161 |
| TspRI | CASTG | 2 cut(s) | 142, 235 |
| XceI | RCATGY | 1 cut(s) | 43 |
| XmiI | GTMKAC | 1 cut(s) | 36 |
| XspI | CTAG | 2 cut(s) | 152, 186 |