Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002110

Physical Location & Seq

Genomic Coordinates Forward (+)

43071834 .. 43072577

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCGGGCATGTGGCGGCTAAATGAAAGCGTTCTGACCTGCAAAAAGGACGGGGGGATCTTCGTGCTCCAATTCAAGGAGCAGGAGGTGAAGCACCAGGTTCTTTATGGAGGCCCATGGTATTACAACAACTCGATGCTATTATTGGCAGATTATGATGGTGTTAAGGCACTGGCAGAGGTTCCTTTGCTTTCCTTGGAGGTGTGGGTGGCGGTGAAGGGTCTGAGAGTGGCCATACGTAATGATCAGGCTCTTACCCGGCTTGGCAATGCTTTGGGGACTTTTGTTAGGGCTGATCAGGTGGCGCTGCAACGGAATGAGGCTACCCAATGGATCCGGTTAATTCATGACGTGCGCCGACGGGTCTTGGCTCGGCTTACGTTCTGCTTCTTACCGGAGGTTTCTGTGGACCTTGAGCTCTGTTATGAAAAGTGTCAGGGAATTTGCAAGGGATGTGGTTTCTTGACCCATGGTGGCAAGGAGTGCGACCAAAAGCTGGTGGAGGACGAGGCCGTGGTTCTGACGTGGGACACTGTGCAGCAGAAGGCGGTCCCACAGTCGAATGCTATGGTGGTTTCACAGCAGTGGCTAGGTTCGGAGGTGCCACTGATGTCCGGGTTGGAGATGATGATGCCGAGCGCTGGGGTCTGTAGCCATGCTGGTGGCTGGTGCTGGGCAGAGTGCAATGGGGACGGAACTAGTTTCCCAGTTGGCTGCCCTGAGTTTCTCGGCGGTAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

27.36

Weight (kDa)

5.63

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13190
fragaria_vesca	FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170
malus_domestica	MD13G1106000.v1.1 MD16G1106200.v1.1
prunus_persica	Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1
pyrus_communis	pycom13g09200 pycom16g09030
rosa_chinensis	RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371
rosa_laevigata	RLG00000006849 RLG00000006850
rosa_multiflora	Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013
rosa_roxburghii	Rroxscaffold_5G00373810 Rroxscaffold_5G00373820
rosa_rugosa	Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900
rosa_samantha	Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900
rosa_wichuraiana	Rw4G027260 Rw4G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	601
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	4 cut(s)	16, 212, 548, 732
AclWI	GGATC	3 cut(s)	65, 328, 341
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	441
AfeI	AGCGCT	1 cut(s)	640
AfiI	CCNNNNNNNGG	3 cut(s)	76, 496, 641
AgsI	TTSAA	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	698
AjiI	CACGTC	2 cut(s)	352, 525
AjnI	CCWGG	1 cut(s)	96
AleI	CACNNNNGTG	1 cut(s)	583
AluBI	AGCT	2 cut(s)	418, 496
AluI	AGCT	2 cut(s)	418, 496
Alw21I	GWGCWC	2 cut(s)	69, 420
AlwI	GGATC	3 cut(s)	65, 328, 341
Aor51HI	AGCGCT	1 cut(s)	640
AoxI	GGCC	3 cut(s)	112, 231, 510
ApeKI	GCWGC	3 cut(s)	307, 538, 714
ApoI	RAATTY	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	307, 357, 641
AspS9I	GGNCC	3 cut(s)	113, 409, 550
AsuC2I	CCSGG	2 cut(s)	259, 616
AsuHPI	GGTGA	2 cut(s)	100, 226
AvaII	GGWCC	2 cut(s)	409, 550
BalI	TGGCCA	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	601
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	69, 420
BbvI	GCAGC	3 cut(s)	294, 550, 701
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	2 cut(s)	244, 295
BcnI	CCSGG	2 cut(s)	259, 616
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	2 cut(s)	590, 699
BfmI	CTRYAG	1 cut(s)	649
BfoI	RGCGCY	2 cut(s)	308, 642
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	4 cut(s)	17, 308, 539, 715
BlsI	GCNGC	4 cut(s)	18, 309, 540, 716
Bme1390I	CCNGG	3 cut(s)	98, 259, 616
Bme18I	GGWCC	2 cut(s)	409, 550
BmgBI	CACGTC	2 cut(s)	352, 525
BmgT120I	GGNCC	3 cut(s)	113, 409, 550
BmiI	GGNNCC	4 cut(s)	183, 335, 552, 603
BmrFI	CCNGG	3 cut(s)	98, 259, 616
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	126, 621
BmuI	ACTGGG	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	259, 616
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	116, 195, 469, 513
BsaWI	WCCGGW	2 cut(s)	336, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 496, 641
Bse1I	ACTGG	2 cut(s)	177, 707
Bse3DI	GCAATG	2 cut(s)	274, 691
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	4 cut(s)	116, 195, 469, 513
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	3 cut(s)	76, 496, 641
BseMI	GCAATG	2 cut(s)	274, 691
BseMII	CTCAG	2 cut(s)	215, 711
BseNI	ACTGG	2 cut(s)	177, 707
BseXI	GCAGC	3 cut(s)	294, 550, 701
BseYI	CCCAGC	2 cut(s)	641, 672
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	114, 233, 512
BshNI	GGYRCC	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	69, 420
BsiSI	CCGG	4 cut(s)	259, 337, 395, 615
BslFI	GGGAC	4 cut(s)	292, 536, 542, 704
BslI	CCNNNNNNNGG	3 cut(s)	76, 496, 641
BsmFI	GGGAC	4 cut(s)	292, 536, 542, 704
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	114, 233, 512
Bsp1286I	GDGCHC	2 cut(s)	69, 420
Bsp143I	GATC	4 cut(s)	57, 244, 295, 333
Bsp19I	CCATGG	2 cut(s)	116, 469
BspACI	CCGC	4 cut(s)	16, 212, 548, 732
BspANI	GGCC	3 cut(s)	114, 233, 512
BspCNI	CTCAG	2 cut(s)	216, 712
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	183, 335, 552, 603
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	3 cut(s)	65, 328, 341
BspT107I	GGYRCC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	274, 691
BsrI	ACTGG	2 cut(s)	177, 707
BssECI	CCNNGG	4 cut(s)	116, 195, 469, 513
BssMI	GATC	4 cut(s)	57, 244, 295, 333
BssT1I	CCWWGG	3 cut(s)	116, 195, 469
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	535, 558
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	224, 720
BstDSI	CCRYGG	3 cut(s)	116, 469, 513
BstF5I	GGATG	1 cut(s)	458
BstH2I	RGCGCY	2 cut(s)	308, 642
BstHHI	GCGC	3 cut(s)	307, 357, 641
BstKTI	GATC	4 cut(s)	60, 247, 298, 336
BstMBI	GATC	4 cut(s)	57, 244, 295, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	96, 257, 614
BstSFI	CTRYAG	1 cut(s)	649
BstSNI	TACGTA	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	294, 550, 701
BstX2I	RGATCY	2 cut(s)	57, 333
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	2 cut(s)	57, 333
BsuRI	GGCC	3 cut(s)	114, 233, 512
BtgI	CCRYGG	3 cut(s)	116, 469, 513
BtrI	CACGTC	2 cut(s)	352, 525
BtsCI	GGATG	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	4 cut(s)	170, 531, 590, 605
BveI	ACCTGC	1 cut(s)	47
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	3 cut(s)	307, 357, 641
Cfr13I	GGNCC	3 cut(s)	113, 409, 550
CsiI	ACCWGGT	1 cut(s)	96
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	5 cut(s)	10, 117, 347, 470, 656
DdeI	CTNAG	2 cut(s)	224, 720
DpnI	GATC	4 cut(s)	59, 246, 297, 335
DpnII	GATC	4 cut(s)	57, 244, 295, 333
EaeI	YGGCCR	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	418
Eco105I	TACGTA	1 cut(s)	239
Eco130I	CCWWGG	3 cut(s)	116, 195, 469
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	409, 550
Eco47III	AGCGCT	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	3 cut(s)	116, 195, 469
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	116, 195, 469
FaeI	CATG	5 cut(s)	13, 120, 350, 473, 659
FaqI	GGGAC	4 cut(s)	292, 536, 542, 704
FatI	CATG	5 cut(s)	9, 116, 346, 469, 655
FbaI	TGATCA	2 cut(s)	244, 295
Fnu4HI	GCNGC	4 cut(s)	17, 308, 539, 715
FokI	GGATG	1 cut(s)	465
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	4 cut(s)	17, 308, 539, 715
FspBI	CTAG	2 cut(s)	590, 699
GlaI	GCGC	3 cut(s)	306, 356, 640
GluI	GCNGC	4 cut(s)	17, 308, 539, 715
GsaI	CCCAGC	2 cut(s)	645, 676
HaeII	RGCGCY	2 cut(s)	308, 642
HaeIII	GGCC	3 cut(s)	114, 233, 512
HapII	CCGG	4 cut(s)	259, 337, 395, 615
HhaI	GCGC	3 cut(s)	307, 357, 641
Hin1II	CATG	5 cut(s)	13, 120, 350, 473, 659
Hin6I	GCGC	3 cut(s)	305, 355, 639
HinP1I	GCGC	3 cut(s)	305, 355, 639
HpaII	CCGG	4 cut(s)	259, 337, 395, 615
HphI	GGTGA	2 cut(s)	100, 226
Hpy166II	GTNNAC	2 cut(s)	409, 737
Hpy188I	TCNGA	4 cut(s)	36, 225, 522, 598
Hpy188III	TCNNGA	2 cut(s)	347, 463
Hpy8I	GTNNAC	2 cut(s)	409, 737
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	211, 538
HpyCH4III	ACNGT	2 cut(s)	535, 558
HpyCH4IV	ACGT	4 cut(s)	238, 351, 380, 524
HpyCH4V	TGCA	5 cut(s)	42, 310, 447, 538, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	2 cut(s)	224, 720
HpySE526I	ACGT	4 cut(s)	238, 351, 380, 524
Hsp92II	CATG	5 cut(s)	13, 120, 350, 473, 659
HspAI	GCGC	3 cut(s)	305, 355, 639
Ksp22I	TGATCA	2 cut(s)	244, 295
Kzo9I	GATC	4 cut(s)	57, 244, 295, 333
LmnI	GCTCC	2 cut(s)	72, 79
Lsp1109I	GCAGC	3 cut(s)	294, 550, 701
LweI	GCATC	2 cut(s)	126, 621
MabI	ACCWGGT	1 cut(s)	96
MaeI	CTAG	2 cut(s)	590, 699
MaeII	ACGT	4 cut(s)	238, 351, 380, 524
MalI	GATC	4 cut(s)	59, 246, 297, 335
MboI	GATC	4 cut(s)	57, 244, 295, 333
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	2 cut(s)	57, 333
MhlI	GDGCHC	2 cut(s)	69, 420
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	3 cut(s)	71, 342, 441
MluNI	TGGCCA	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	9 cut(s)	79, 104, 172, 193, 313, 391, 496, 502, 592
Mox20I	TGGCCA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	2 cut(s)	165, 341
MslI	CAYNNNNRTG	2 cut(s)	583, 660
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	4 cut(s)	259, 337, 395, 615
MspR9I	CCNGG	3 cut(s)	98, 259, 616
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	483
NciI	CCSGG	2 cut(s)	259, 616
NcoI	CCATGG	2 cut(s)	116, 469
NdeII	GATC	4 cut(s)	57, 244, 295, 333
NlaIII	CATG	5 cut(s)	13, 120, 350, 473, 659
NlaIV	GGNNCC	4 cut(s)	183, 335, 552, 603
NmeAIII	GCCGAG	3 cut(s)	352, 660, 708
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	583
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	18, 309, 540, 716
Ppu21I	YACGTR	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	2 cut(s)	641, 672
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	4 cut(s)	183, 335, 552, 603
PspPI	GGNCC	3 cut(s)	113, 409, 550
PsuI	RGATCY	2 cut(s)	57, 333
RseI	CAYNNNNRTG	2 cut(s)	583, 660
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	165, 341
SatI	GCNGC	4 cut(s)	17, 308, 539, 715
Sau3AI	GATC	4 cut(s)	57, 244, 295, 333
Sau96I	GGNCC	3 cut(s)	113, 409, 550
ScrFI	CCNGG	3 cut(s)	98, 259, 616
SduI	GDGCHC	2 cut(s)	69, 420
SexAI	ACCWGGT	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	126, 621
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	2 cut(s)	409, 550
SmiMI	CAYNNNNRTG	2 cut(s)	583, 660
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SnaBI	TACGTA	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	698
Sse9I	AATT	3 cut(s)	71, 342, 441
SsiI	CCGC	4 cut(s)	16, 212, 548, 732
SspMI	CTAG	2 cut(s)	590, 699
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	96, 257, 614
StyI	CCWWGG	3 cut(s)	116, 195, 469
TaaI	ACNGT	2 cut(s)	535, 558
TaiI	ACGT	4 cut(s)	241, 354, 383, 527
TaqI	TCGA	2 cut(s)	134, 560
TasI	AATT	3 cut(s)	71, 342, 441
TauI	GCSGC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	165, 341
Tru9I	TTAA	2 cut(s)	165, 341
TscAI	CASTG	4 cut(s)	177, 538, 590, 612
TseI	GCWGC	3 cut(s)	307, 538, 714
TspDTI	ATGAA	3 cut(s)	39, 335, 441
TspGWI	ACGGA	2 cut(s)	328, 708
TspRI	CASTG	4 cut(s)	177, 538, 590, 612
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	409, 550
XapI	RAATTY	1 cut(s)	441
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	2 cut(s)	590, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.