Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8121482.1

Orthogroup ID

OG0002110

Physical Location & Seq

Genomic Coordinates Forward (+)

70 .. 620

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8121482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

atggccgaggagcaaatagattatgaagaggaggagtatggaggtgctcagaagctccaatatcaggaaagtggagccatacctgctcttgctgatgaagaaccgatggtagaagatgacgagtatgacgatctctacaatgatgttaatgttggagaaggtttcctgcagatgcaccgacctgaggcaccacacccacctgctggtgttggcaatggaggactccaagctcagaaaaataatgttcctgaagtaagagttcaagctggtgtttctcaggaactgaaaaatccgggattttcagttgaaggaaagtattctagtgttcctgaacagaaggatcagcccccagtgtctaaggtgccagaactgggatctcaaaaggggagggttatggagatgactcatgatgctcaagtcaggaatatgggttttcaggggacagcaactatgccgtccaatgttggtgttgattcttcttcagatcttactgggaaaattgccaatgggcctattccatcaatgaattctagcactactggtcctccagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

184

Amino Acids

19.69

Weight (kDa)

4.31

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13190
fragaria_vesca	FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170
malus_domestica	MD13G1106000.v1.1 MD16G1106200.v1.1
prunus_persica	Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1
pyrus_communis	pycom13g09200 pycom16g09030
rosa_chinensis	RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371
rosa_laevigata	RLG00000006849 RLG00000006850
rosa_multiflora	Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013
rosa_roxburghii	Rroxscaffold_5G00373810 Rroxscaffold_5G00373820
rosa_rugosa	Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900
rosa_samantha	Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900
rosa_wichuraiana	Rw4G027260 Rw4G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	2 cut(s)	91, 208
AccB1I	GGYRCC	2 cut(s)	187, 361
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	2 cut(s)	348, 382
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	270, 465
AfiI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
AgsI	TTSAA	2 cut(s)	263, 308
AluBI	AGCT	3 cut(s)	55, 230, 266
AluI	AGCT	3 cut(s)	55, 230, 266
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	348, 382
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	2 cut(s)	3, 509
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	509, 542
AsuC2I	CCSGG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	2 cut(s)	187, 361
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	2 cut(s)	100, 526
BceAI	ACGGC	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	294
BfaI	CTAG	2 cut(s)	321, 531
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	2 cut(s)	91, 208
BglII	AGATCT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	509, 542
BmiI	GGNNCC	3 cut(s)	76, 189, 363
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	3 cut(s)	344, 380, 501
BmsI	GCATC	2 cut(s)	162, 400
BmuI	ACTGGG	3 cut(s)	344, 380, 501
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
Bse1I	ACTGG	4 cut(s)	350, 375, 496, 544
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	4 cut(s)	62, 174, 245, 290
BseNI	ACTGG	4 cut(s)	350, 375, 496, 544
BseRI	GAGGAG	3 cut(s)	23, 44, 47
BshFI	GGCC	2 cut(s)	5, 511
BshNI	GGYRCC	2 cut(s)	187, 361
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	5, 511
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	130, 340, 374, 484
BspANI	GGCC	2 cut(s)	5, 511
BspCNI	CTCAG	4 cut(s)	61, 175, 244, 289
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	76, 189, 363
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	2 cut(s)	91, 208
BspPI	GGATC	2 cut(s)	348, 382
BspT107I	GGYRCC	2 cut(s)	187, 361
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	350, 375, 496, 544
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	130, 340, 374, 484
Bst6I	CTCTTC	1 cut(s)	21
BstDEI	CTNAG	5 cut(s)	48, 183, 231, 276, 357
BstKTI	GATC	4 cut(s)	133, 343, 377, 487
BstMBI	GATC	4 cut(s)	130, 340, 374, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	374, 484
BstYI	RGATCY	2 cut(s)	374, 484
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	5, 511
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	2 cut(s)	91, 208
CaiI	CAGNNNCTG	1 cut(s)	283
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	509, 542
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	7 cut(s)	5, 55, 77, 230, 266, 346, 511
CviKI_1	RGCY	7 cut(s)	5, 55, 77, 230, 266, 346, 511
DdeI	CTNAG	5 cut(s)	48, 183, 231, 276, 357
DpnI	GATC	4 cut(s)	132, 342, 376, 486
DpnII	GATC	4 cut(s)	130, 340, 374, 484
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	270, 465
Eco81I	CCTNAGG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	526
FaeI	CATG	1 cut(s)	410
FaiI	YATR	8 cut(s)	24, 39, 80, 126, 395, 408, 428, 452
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	1 cut(s)	406
FspBI	CTAG	2 cut(s)	321, 531
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	5, 511
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	3 cut(s)	222, 403, 473
HpaII	CCGG	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	51, 234, 484
Hpy188III	TCNNGA	6 cut(s)	65, 248, 278, 329, 407, 421
HpyAV	CCTTC	3 cut(s)	152, 302, 331
HpyCH4V	TGCA	2 cut(s)	169, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	48, 183, 231, 276, 357
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	130, 340, 374, 484
LmnI	GCTCC	3 cut(s)	10, 60, 74
LweI	GCATC	2 cut(s)	162, 400
MaeI	CTAG	2 cut(s)	321, 531
MalI	GATC	4 cut(s)	132, 342, 376, 486
MboI	GATC	4 cut(s)	130, 340, 374, 484
MboII	GAAGA	5 cut(s)	38, 110, 125, 468, 471
MflI	RGATCY	2 cut(s)	374, 484
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	498, 526
MlyI	GAGTC	2 cut(s)	216, 397
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	22, 25, 35, 178, 212, 381
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	147
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	130, 340, 374, 484
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	3 cut(s)	76, 189, 363
NmeAIII	GCCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	292
PleI	GAGTC	2 cut(s)	216, 397
PpsI	GAGTC	2 cut(s)	216, 397
PspN4I	GGNNCC	3 cut(s)	76, 189, 363
PspPI	GGNCC	2 cut(s)	509, 542
PstI	CTGCAG	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	374, 484
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	4 cut(s)	130, 340, 374, 484
Sau96I	GGNCC	2 cut(s)	509, 542
SchI	GAGTC	2 cut(s)	216, 397
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	9 cut(s)	46, 57, 85, 163, 184, 202, 232, 268, 363
SfaNI	GCATC	2 cut(s)	162, 400
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	2 cut(s)	498, 526
SspMI	CTAG	2 cut(s)	321, 531
StyD4I	CCNGG	1 cut(s)	292
TasI	AATT	2 cut(s)	498, 526
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	39, 111, 539
TspRI	CASTG	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	2 cut(s)	321, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.