Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016445.1

Orthogroup ID

OG0002110

Physical Location & Seq

Genomic Coordinates Forward (+)

57576 .. 58262

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016445.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggccgaggagcaaatagattatgaagaggaggagtatggaggtgctcagaagctccaatatcaggaaagtggagccatacctgctcttgctgatgaagaaccgatggtagaagatgacgagtatgacgatctctacaatgatgttaatgttggagaaggtttcctgcagatgcaccgacctgaggcaccacacccacctgctggtgttggcaatggaggactccaagctcagaaaaataatgttcctgaagtaagagttcaagctggtgtttctcaggaactgaaaaatccgggattttcagttgaaggaaagtattctagtgttcctgaacagaaggatcagcccccagtgtctaaggtgccagaactgggatctcaaaaggggagggttatggagatgactcatgatgctcaagtcaggaatatgggttttcaggggacagcaactatgccgtccaatgttggtgttgattcttcttcagatcttactgggaaaattgccaatgggcctattccatcaatgaattctagcactactggtcctccagctgttccacagatgccggctaatcaaatgaatatgaagataaatgttaatcgtccaatggttaatgaaaaccaaattcgtcccccaattgagaatggttcagccacactgtttgtgggagaactccattggtggact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

229

Amino Acids

24.88

Weight (kDa)

4.46

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13190
fragaria_vesca	FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170
malus_domestica	MD13G1106000.v1.1 MD16G1106200.v1.1
prunus_persica	Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1
pyrus_communis	pycom13g09200 pycom16g09030
rosa_chinensis	RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371
rosa_laevigata	RLG00000006849 RLG00000006850
rosa_multiflora	Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013
rosa_roxburghii	Rroxscaffold_5G00373810 Rroxscaffold_5G00373820
rosa_rugosa	Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900
rosa_samantha	Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900
rosa_wichuraiana	Rw4G027260 Rw4G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	2 cut(s)	91, 208
AccB1I	GGYRCC	2 cut(s)	187, 361
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	2 cut(s)	348, 382
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	526, 624
AcuI	CTGAAG	2 cut(s)	270, 465
AfiI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
AgsI	TTSAA	2 cut(s)	263, 308
AluBI	AGCT	4 cut(s)	55, 230, 266, 551
AluI	AGCT	4 cut(s)	55, 230, 266, 551
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	348, 382
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	2 cut(s)	3, 509
ApoI	RAATTY	2 cut(s)	526, 624
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	509, 542
AsuC2I	CCSGG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	2 cut(s)	187, 361
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	2 cut(s)	100, 526
BceAI	ACGGC	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	294
BfaI	CTAG	2 cut(s)	321, 531
BfmI	CTRYAG	1 cut(s)	167
BfuAI	ACCTGC	2 cut(s)	91, 208
BglII	AGATCT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	509, 542
BmiI	GGNNCC	3 cut(s)	76, 189, 363
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	3 cut(s)	344, 380, 501
BmsI	GCATC	3 cut(s)	162, 400, 552
BmuI	ACTGGG	3 cut(s)	344, 380, 501
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	4 cut(s)	350, 375, 496, 544
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	4 cut(s)	62, 174, 245, 290
BseNI	ACTGG	4 cut(s)	350, 375, 496, 544
BseRI	GAGGAG	3 cut(s)	23, 44, 47
BshFI	GGCC	2 cut(s)	5, 511
BshNI	GGYRCC	2 cut(s)	187, 361
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	293, 566
BslFI	GGGAC	2 cut(s)	454, 615
BslI	CCNNNNNNNGG	4 cut(s)	64, 184, 203, 371
BsmFI	GGGAC	2 cut(s)	454, 615
BsnI	GGCC	2 cut(s)	5, 511
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	130, 340, 374, 484
BspANI	GGCC	2 cut(s)	5, 511
BspCNI	CTCAG	4 cut(s)	61, 175, 244, 289
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	76, 189, 363
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	2 cut(s)	91, 208
BspPI	GGATC	2 cut(s)	348, 382
BspT107I	GGYRCC	2 cut(s)	187, 361
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	4 cut(s)	350, 375, 496, 544
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	130, 340, 374, 484
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	5 cut(s)	48, 183, 231, 276, 357
BstKTI	GATC	4 cut(s)	133, 343, 377, 487
BstMBI	GATC	4 cut(s)	130, 340, 374, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	374, 484
BstYI	RGATCY	2 cut(s)	374, 484
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	5, 511
BtsIMutI	CAGTG	2 cut(s)	357, 656
BveI	ACCTGC	2 cut(s)	91, 208
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	283
CciI	TCATGA	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	509, 542
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	1 cut(s)	407
DdeI	CTNAG	5 cut(s)	48, 183, 231, 276, 357
DpnI	GATC	4 cut(s)	132, 342, 376, 486
DpnII	GATC	4 cut(s)	130, 340, 374, 484
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	270, 465
Eco81I	CCTNAGG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	526
FaeI	CATG	1 cut(s)	410
FaiI	YATR	9 cut(s)	24, 39, 80, 126, 395, 408, 428, 452, 584
FaqI	GGGAC	2 cut(s)	454, 615
FatI	CATG	1 cut(s)	406
FspBI	CTAG	2 cut(s)	321, 531
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	5, 511
HapII	CCGG	2 cut(s)	293, 566
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	3 cut(s)	222, 403, 473
HpaII	CCGG	2 cut(s)	293, 566
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	3 cut(s)	51, 234, 484
Hpy188III	TCNNGA	6 cut(s)	65, 248, 278, 329, 407, 421
Hpy8I	GTNNAC	1 cut(s)	684
HpyAV	CCTTC	3 cut(s)	152, 302, 331
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4V	TGCA	2 cut(s)	169, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	48, 183, 231, 276, 357
Hsp92II	CATG	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	565
KroNI	GCCGGC	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	130, 340, 374, 484
LmnI	GCTCC	3 cut(s)	10, 60, 74
LweI	GCATC	3 cut(s)	162, 400, 552
MaeI	CTAG	2 cut(s)	321, 531
MalI	GATC	4 cut(s)	132, 342, 376, 486
MboI	GATC	4 cut(s)	130, 340, 374, 484
MboII	GAAGA	6 cut(s)	38, 110, 125, 468, 471, 598
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	374, 484
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	4 cut(s)	498, 526, 624, 636
MlyI	GAGTC	2 cut(s)	216, 397
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	22, 25, 35, 178, 212, 381, 555
MroNI	GCCGGC	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	3 cut(s)	147, 597, 612
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	2 cut(s)	293, 566
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	83
NaeI	GCCGGC	1 cut(s)	567
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	4 cut(s)	130, 340, 374, 484
NgoMIV	GCCGGC	1 cut(s)	565
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	3 cut(s)	76, 189, 363
NmeAIII	GCCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	292
PleI	GAGTC	2 cut(s)	216, 397
PpsI	GAGTC	2 cut(s)	216, 397
PspN4I	GGNNCC	3 cut(s)	76, 189, 363
PspPI	GGNCC	2 cut(s)	509, 542
PstI	CTGCAG	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	374, 484
PvuII	CAGCTG	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	147, 597, 612
Sau3AI	GATC	4 cut(s)	130, 340, 374, 484
Sau96I	GGNCC	2 cut(s)	509, 542
SchI	GAGTC	2 cut(s)	216, 397
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	3 cut(s)	162, 400, 552
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	4 cut(s)	498, 526, 624, 636
SspMI	CTAG	2 cut(s)	321, 531
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	660
TasI	AATT	4 cut(s)	498, 526, 624, 636
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	147, 597, 612
Tru9I	TTAA	3 cut(s)	147, 597, 612
TscAI	CASTG	2 cut(s)	357, 663
TspDTI	ATGAA	6 cut(s)	39, 111, 539, 593, 599, 630
TspRI	CASTG	2 cut(s)	357, 663
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	2 cut(s)	526, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	2 cut(s)	321, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.