Rorug04G0257900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002110
Physical Location & Seq
Reverse (-)
43122774 .. 43125290
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0257900.1

Sequence Viewer

Length: 984 bp
ATGGCAAACTTGTTCATCACTTGTTTCGGTTTGCTGCTCTTGGTTGTTTTGGTCTCGTCACCGGCCGCCTCTGTGCCTTTGGAGGTTGGTTTCTACCGGAAATCATGCCCCTCGGCCGAGACGATTGTGAGAGATACATTGAAGAAGGCAGCTGCAAGCGATCCTGCCATAGCTGCTGCCCTCATCAGGCTCCATTTCCACGATTGCTTTGTGAGGGGTTGCGATGCATCAATTTTGCTGGATTCTAAACCCGGCAAGCCAGCTGCAGAAAAAGAAAGCATGGGAAACAAAGGCGTCCAAGGCTTCGAGGTCATAGACGAAGCCAAGGCCAGGATAGAAGCTCAGTGCCCCAACACTGTCTCCTGTGCAGACATAATCACCTTCGCTGCCCGAGACAGTGTTTTCACCACCGGGGGAACTTACTATTCAGCCCCCGGAGGCCGCCGTGATGGAACGGTCTCATTGGCTTCGGAAGTGATCAAAAACCTCCCTGATGCATTCTTCAACGCAACACAACTGAAGACCAACTTTGCAAGAAAAGGGTTGTCTCTAGAGGATATGGTGACGCTCTCCGGAGCTCACTCCATTGGGGACTCACACTGCTCTTCCTTCTCAAAACGACTATACTCCTTTAACAAAACGCATGCACAAGACCCTGAGATAAATAAGGCTTATGGGGAGTACTTGAAATCCAAATGCCCTAACGTGAAAAATGGTGTTGACCCGGTTGTGGCTTTTGATCCTTTGACCCCAACTTTGCTTGATAACAACTACTATAAGAATTTGGTGGGTCACAAGGGGCTGTTGGCTTCGGACCAGGAGCTTTGGAGCAGTGACTTAACTAGGAAGATGGTGAAGTACCGCAGGAACCATCCGAGGAAATGGGGTTTGGAGTTTGCTGATGCGATGGTGAAGATGGGTTCCATTGATGTGTTGGTTGGGAAACAAGGAGAGATCAGGAAGAACTGCAGGGCCGTGAATTAA

Protein Analysis

327

Amino Acids

35.59

Weight (kDa)

8.85

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 287 6.3e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 572
AciI CCGC 3 cut(s) 66, 442, 862
AclWI GGATC 2 cut(s) 155, 734
AcoI YGGCCR 2 cut(s) 63, 114
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 683, 860
AfiI CCNNNNNNNGG 3 cut(s) 186, 330, 730
AgsI TTSAA 3 cut(s) 142, 505, 688
AjnI CCWGG 2 cut(s) 329, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
AluBI AGCT 6 cut(s) 152, 173, 263, 341, 578, 823
AluI AGCT 6 cut(s) 152, 173, 263, 341, 578, 823
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
AlwI GGATC 2 cut(s) 155, 734
Ama87I CYCGRG 1 cut(s) 390
Aor13HI TCCGGA 1 cut(s) 572
AoxI GGCC 5 cut(s) 63, 114, 327, 439, 972
ApeKI GCWGC 7 cut(s) 34, 149, 152, 173, 176, 263, 386
ApoI RAATTY 1 cut(s) 781
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AspS9I GGNCC 2 cut(s) 814, 972
AsuC2I CCSGG 4 cut(s) 252, 412, 435, 725
AsuHPI GGTGA 6 cut(s) 51, 370, 397, 574, 865, 922
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 7 cut(s) 21, 139, 160, 161, 163, 250, 373
BccI CCATC 5 cut(s) 443, 844, 879, 901, 910
BceAI ACGGC 2 cut(s) 429, 959
BciT130I CCWGG 2 cut(s) 331, 818
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 4 cut(s) 252, 412, 435, 725
BcoDI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BfaI CTAG 2 cut(s) 551, 843
BfmI CTRYAG 2 cut(s) 264, 967
BisI GCNGC 9 cut(s) 35, 66, 150, 153, 174, 177, 264, 387, 442
BlsI GCNGC 9 cut(s) 36, 67, 151, 154, 175, 178, 265, 388, 443
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 814, 972
BmiI GGNNCC 3 cut(s) 191, 869, 922
BmrFI CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
BmsI GCATC 4 cut(s) 214, 236, 484, 892
BpiI GAAGAC 1 cut(s) 527
BpuMI CCSGG 4 cut(s) 252, 412, 435, 725
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 58, 463
BsaJI CCNNGG 6 cut(s) 111, 298, 324, 411, 433, 875
BsaWI WCCGGW 2 cut(s) 96, 572
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 330, 730
Bse118I RCCGGY 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 572
BseBI CCWGG 2 cut(s) 331, 818
BseDI CCNNGG 6 cut(s) 111, 298, 324, 411, 433, 875
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 3 cut(s) 186, 330, 730
BseMII CTCAG 2 cut(s) 356, 648
BseSI GKGCMC 1 cut(s) 350
BseX3I CGGCCG 2 cut(s) 63, 114
BseXI GCAGC 7 cut(s) 21, 139, 160, 161, 163, 250, 373
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 2 cut(s) 66, 117
BshFI GGCC 5 cut(s) 65, 116, 329, 441, 974
BsiEI CGRYCG 2 cut(s) 66, 117
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 7 cut(s) 62, 97, 252, 411, 435, 573, 725
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 186, 330, 730
BsmAI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 5 cut(s) 65, 116, 329, 441, 974
Bso31I GGTCTC 2 cut(s) 58, 463
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 350, 580
Bsp13I TCCGGA 1 cut(s) 572
Bsp143I GATC 4 cut(s) 160, 477, 739, 954
BspACI CCGC 3 cut(s) 66, 442, 862
BspANI GGCC 5 cut(s) 65, 116, 329, 441, 974
BspCNI CTCAG 2 cut(s) 355, 649
BspEI TCCGGA 1 cut(s) 572
BspLI GGNNCC 3 cut(s) 191, 869, 922
BspMAI CTGCAG 2 cut(s) 268, 971
BspPI GGATC 2 cut(s) 155, 734
BspQI GCTCTTC 1 cut(s) 610
BspTNI GGTCTC 2 cut(s) 58, 463
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 6 cut(s) 111, 298, 324, 411, 433, 875
BssMI GATC 4 cut(s) 160, 477, 739, 954
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 298, 324
Bst2UI CCWGG 2 cut(s) 331, 818
Bst4CI ACNGT 3 cut(s) 358, 398, 457
Bst6I CTCTTC 1 cut(s) 610
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 157, 257, 261, 645
BstDEI CTNAG 2 cut(s) 342, 657
BstF5I GGATG 1 cut(s) 871
BstKTI GATC 4 cut(s) 163, 480, 742, 957
BstMAI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BstMBI GATC 4 cut(s) 160, 477, 739, 954
BstMCI CGRYCG 2 cut(s) 66, 117
BstMWI GCNNNNNNNGC 2 cut(s) 173, 300
BstNI CCWGG 2 cut(s) 331, 818
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 6 cut(s) 250, 329, 410, 433, 723, 816
BstSFI CTRYAG 2 cut(s) 264, 967
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 7 cut(s) 21, 139, 160, 161, 163, 250, 373
BstV2I GAAGAC 1 cut(s) 527
BstZI CGGCCG 2 cut(s) 63, 114
BsuRI GGCC 5 cut(s) 65, 116, 329, 441, 974
BtgZI GCGATG 2 cut(s) 237, 920
BtsCI GGATG 1 cut(s) 871
BtsI GCAGTG 2 cut(s) 598, 838
BtsIMutI CAGTG 5 cut(s) 350, 354, 403, 598, 838
Cac8I GCNNGC 4 cut(s) 157, 257, 261, 645
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 814, 972
CseI GACGC 2 cut(s) 283, 574
Csp6I GTAC 2 cut(s) 682, 859
CviAII CATG 3 cut(s) 105, 280, 644
CviQI GTAC 2 cut(s) 682, 859
DdeI CTNAG 2 cut(s) 342, 657
DpnI GATC 4 cut(s) 162, 479, 741, 956
DpnII GATC 4 cut(s) 160, 477, 739, 954
EaeI YGGCCR 2 cut(s) 63, 114
EagI CGGCCG 2 cut(s) 63, 114
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
Ecl136II GAGCTC 1 cut(s) 578
EclXI CGGCCG 2 cut(s) 63, 114
Eco130I CCWWGG 2 cut(s) 298, 324
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 2 cut(s) 58, 463
Eco47I GGWCC 1 cut(s) 814
Eco52I CGGCCG 2 cut(s) 63, 114
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 329, 816
EcoT14I CCWWGG 2 cut(s) 298, 324
EcoT22I ATGCAT 2 cut(s) 229, 499
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 298, 324
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 108, 283, 647
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 605
FatI CATG 3 cut(s) 104, 279, 643
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 9 cut(s) 35, 66, 150, 153, 174, 177, 264, 387, 442
FokI GGATG 1 cut(s) 858
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 9 cut(s) 35, 66, 150, 153, 174, 177, 264, 387, 442
FspBI CTAG 2 cut(s) 551, 843
GluI GCNGC 9 cut(s) 35, 66, 150, 153, 174, 177, 264, 387, 442
HaeIII GGCC 5 cut(s) 65, 116, 329, 441, 974
HapII CCGG 7 cut(s) 62, 97, 252, 411, 435, 573, 725
HgaI GACGC 2 cut(s) 283, 574
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 3 cut(s) 108, 283, 647
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 2 cut(s) 242, 593
HpaII CCGG 7 cut(s) 62, 97, 252, 411, 435, 573, 725
HphI GGTGA 6 cut(s) 51, 370, 397, 574, 865, 922
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 3 cut(s) 472, 814, 876
Hpy188III TCNNGA 3 cut(s) 551, 573, 958
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 139, 391, 619
HpyCH4III ACNGT 3 cut(s) 358, 398, 457
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 8 cut(s) 155, 227, 266, 368, 497, 533, 647, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 300
HpyF3I CTNAG 2 cut(s) 342, 657
HpySE526I ACGT 1 cut(s) 705
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 3 cut(s) 108, 283, 647
Kpn2I TCCGGA 1 cut(s) 572
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 4 cut(s) 160, 477, 739, 954
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 4 cut(s) 195, 575, 820, 828
Lsp1109I GCAGC 7 cut(s) 21, 139, 160, 161, 163, 250, 373
LweI GCATC 4 cut(s) 214, 236, 484, 892
MaeI CTAG 2 cut(s) 551, 843
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 4 cut(s) 57, 562, 791, 833
MalI GATC 4 cut(s) 162, 479, 741, 956
MboI GATC 4 cut(s) 160, 477, 739, 954
MboII GAAGA 7 cut(s) 154, 493, 532, 597, 859, 925, 973
MhlI GDGCHC 2 cut(s) 350, 580
MluCI AATT 3 cut(s) 231, 781, 979
MlyI GAGTC 1 cut(s) 587
Mph1103I ATGCAT 2 cut(s) 229, 499
MroI TCCGGA 1 cut(s) 572
MseI TTAA 3 cut(s) 633, 839, 982
MslI CAYNNNNRTG 1 cut(s) 929
MspA1I CMGCKG 2 cut(s) 152, 263
MspI CCGG 7 cut(s) 62, 97, 252, 411, 435, 573, 725
MspR9I CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 2 cut(s) 331, 818
MwoI GCNNNNNNNGC 2 cut(s) 173, 300
NciI CCSGG 4 cut(s) 252, 412, 435, 725
NdeII GATC 4 cut(s) 160, 477, 739, 954
NlaIII CATG 3 cut(s) 108, 283, 647
NlaIV GGNNCC 3 cut(s) 191, 869, 922
NmeAIII GCCGAG 2 cut(s) 92, 142
NmuCI GTSAC 4 cut(s) 57, 562, 791, 833
NsiI ATGCAT 2 cut(s) 229, 499
NspI RCATGY 1 cut(s) 647
PaeI GCATGC 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 9 cut(s) 36, 67, 151, 154, 175, 178, 265, 388, 443
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 329, 816
PspGI CCWGG 2 cut(s) 329, 816
PspN4I GGNNCC 3 cut(s) 191, 869, 922
PspPI GGNCC 2 cut(s) 814, 972
PstI CTGCAG 2 cut(s) 268, 971
PvuII CAGCTG 2 cut(s) 152, 263
RsaI GTAC 2 cut(s) 683, 860
RsaNI GTAC 2 cut(s) 682, 859
RseI CAYNNNNRTG 1 cut(s) 929
SacI GAGCTC 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 633, 839, 982
SatI GCNGC 9 cut(s) 35, 66, 150, 153, 174, 177, 264, 387, 442
Sau3AI GATC 4 cut(s) 160, 477, 739, 954
Sau96I GGNCC 2 cut(s) 814, 972
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
SduI GDGCHC 2 cut(s) 350, 580
SfaNI GCATC 4 cut(s) 214, 236, 484, 892
SfcI CTRYAG 2 cut(s) 264, 967
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 929
SphI GCATGC 1 cut(s) 647
Sse9I AATT 3 cut(s) 231, 781, 979
SsiI CCGC 3 cut(s) 66, 442, 862
SspMI CTAG 2 cut(s) 551, 843
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 6 cut(s) 250, 329, 410, 433, 723, 816
StyI CCWWGG 2 cut(s) 298, 324
TaaI ACNGT 3 cut(s) 358, 398, 457
TaiI ACGT 1 cut(s) 708
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 231, 781, 979
TatI WGTACW 1 cut(s) 681
TauI GCSGC 2 cut(s) 68, 444
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 633, 839, 982
Tru9I TTAA 3 cut(s) 633, 839, 982
TscAI CASTG 5 cut(s) 350, 361, 403, 605, 838
TseFI GTSAC 4 cut(s) 57, 562, 791, 833
TseI GCWGC 7 cut(s) 34, 149, 152, 173, 176, 263, 386
Tsp45I GTSAC 4 cut(s) 57, 562, 791, 833
TspDTI ATGAA 1 cut(s) 4
TspRI CASTG 5 cut(s) 350, 361, 403, 605, 838
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 1 cut(s) 781
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 647
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XspI CTAG 2 cut(s) 551, 843
ZrmI AGTACT 1 cut(s) 683
Zsp2I ATGCAT 2 cut(s) 229, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.