RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13190 |
| fragaria_vesca | FvH4_3g29240 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25160 FvH4_4g25170 FvH4_4g25170 |
| malus_domestica | MD13G1106000.v1.1 MD16G1106200.v1.1 |
| prunus_persica | Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 Prupe.1G240200_v2.0.a1 |
| pyrus_communis | pycom13g09200 pycom16g09030 |
| rosa_chinensis | RchiOBHm_Chr4g0432361 RchiOBHm_Chr4g0432371 |
| rosa_laevigata | RLG00000006849 RLG00000006850 |
| rosa_multiflora | Rmu_co8121482.1_g000001 Rmu_sc0001084.1_g000036 Rmu_sc0001084.1_g000038 Rmu_sc0016445.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00373810 Rroxscaffold_5G00373820 |
| rosa_rugosa | Rorug04G0257400 Rorug04G0257500 Rorug04G0257600 Rorug04G0257700.1 Rorug04G0257800 Rorug04G0257900 |
| rosa_samantha | Rh4AG313700 Rh4AG313800 Rh4BG321100 Rh4BG321300 Rh4CG336300 Rh4CG336400 Rh4DG316800 Rh4DG316900 |
| rosa_wichuraiana | Rw4G027260 Rw4G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 883, 1142 |
| AccB1I | GGYRCC | 3 cut(s) | 187, 488, 517 |
| AciI | CCGC | 4 cut(s) | 92, 762, 1054, 1167 |
| AclWI | GGATC | 5 cut(s) | 752, 1214, 1430, 1479, 1603 |
| AcoI | YGGCCR | 1 cut(s) | 606 |
| AcsI | RAATTY | 6 cut(s) | 19, 288, 452, 481, 958, 985 |
| AcuI | CTGAAG | 1 cut(s) | 486 |
| AfaI | GTAC | 2 cut(s) | 125, 1026 |
| AgsI | TTSAA | 7 cut(s) | 26, 113, 263, 808, 899, 965, 1785 |
| AjiI | CACGTC | 1 cut(s) | 1744 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 879, 911 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1378, 1410 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 1680 |
| Alw26I | GTCTC | 2 cut(s) | 966, 1858 |
| AlwI | GGATC | 5 cut(s) | 752, 1214, 1430, 1479, 1603 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 197, 1157 |
| AoxI | GGCC | 5 cut(s) | 606, 828, 920, 1068, 1144 |
| ApeKI | GCWGC | 3 cut(s) | 764, 767, 1571 |
| ApoI | RAATTY | 6 cut(s) | 19, 288, 452, 481, 958, 985 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 316 |
| AspLEI | GCGC | 1 cut(s) | 88 |
| AsuC2I | CCSGG | 2 cut(s) | 294, 1682 |
| AsuHPI | GGTGA | 2 cut(s) | 697, 1514 |
| AvaII | GGWCC | 8 cut(s) | 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800 |
| BanI | GGYRCC | 3 cut(s) | 187, 488, 517 |
| BanII | GRGCYC | 1 cut(s) | 1689 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 1680 |
| BbvCI | CCTCAGC | 1 cut(s) | 6 |
| BbvI | GCAGC | 3 cut(s) | 754, 776, 1558 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BclI | TGATCA | 1 cut(s) | 1822 |
| BcnI | CCSGG | 2 cut(s) | 294, 1682 |
| BcoDI | GTCTC | 2 cut(s) | 966, 1858 |
| BfaI | CTAG | 2 cut(s) | 321, 1482 |
| BfmI | CTRYAG | 1 cut(s) | 167 |
| BfuAI | ACCTGC | 2 cut(s) | 883, 1142 |
| BisI | GCNGC | 3 cut(s) | 765, 768, 1572 |
| BlsI | GCNGC | 3 cut(s) | 766, 769, 1573 |
| Bme18I | GGWCC | 8 cut(s) | 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800 |
| BmgBI | CACGTC | 1 cut(s) | 1744 |
| BmiI | GGNNCC | 9 cut(s) | 76, 189, 490, 519, 1069, 1209, 1259, 1618, 1686 |
| BmrI | ACTGGG | 1 cut(s) | 1771 |
| BmsI | GCATC | 5 cut(s) | 162, 184, 637, 1423, 1642 |
| BmuI | ACTGGG | 1 cut(s) | 1771 |
| Bpu10I | CCTNAGC | 1 cut(s) | 6 |
| BpuEI | CTTGAG | 2 cut(s) | 357, 1561 |
| BpuMI | CCSGG | 2 cut(s) | 294, 1682 |
| Bsa29I | ATCGAT | 1 cut(s) | 178 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1824, 1873 |
| BsaJI | CCNNGG | 8 cut(s) | 293, 886, 910, 1049, 1071, 1211, 1261, 1688 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 805, 835, 1621, 1651, 1676, 1706 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| Bse1I | ACTGG | 7 cut(s) | 191, 350, 499, 660, 717, 771, 1766 |
| Bse3DI | GCAATG | 2 cut(s) | 1317, 1815 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1824, 1873 |
| BseCI | ATCGAT | 1 cut(s) | 178 |
| BseDI | CCNNGG | 8 cut(s) | 293, 886, 910, 1049, 1071, 1211, 1261, 1688 |
| BseGI | GGATG | 5 cut(s) | 100, 799, 1386, 1392, 1849 |
| BseJI | GATNNNNATC | 2 cut(s) | 1824, 1873 |
| BseMI | GCAATG | 2 cut(s) | 1317, 1815 |
| BseNI | ACTGG | 7 cut(s) | 191, 350, 499, 660, 717, 771, 1766 |
| BseRI | GAGGAG | 9 cut(s) | 23, 44, 1077, 1143, 1254, 1323, 1473, 1642, 1876 |
| BseXI | GCAGC | 3 cut(s) | 754, 776, 1558 |
| BseYI | CCCAGC | 4 cut(s) | 938, 1103, 1322, 1345 |
| BshFI | GGCC | 5 cut(s) | 608, 830, 922, 1070, 1146 |
| BshNI | GGYRCC | 3 cut(s) | 187, 488, 517 |
| BshVI | ATCGAT | 1 cut(s) | 178 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 1680 |
| BsiSI | CCGG | 4 cut(s) | 267, 293, 1681, 1814 |
| BslFI | GGGAC | 3 cut(s) | 179, 1329, 1778 |
| BsmAI | GTCTC | 2 cut(s) | 966, 1858 |
| BsmBI | CGTCTC | 1 cut(s) | 1858 |
| BsmFI | GGGAC | 3 cut(s) | 179, 1329, 1778 |
| BsmI | GAATGC | 2 cut(s) | 1195, 1287 |
| BsnI | GGCC | 5 cut(s) | 608, 830, 922, 1070, 1146 |
| Bsp1286I | GDGCHC | 3 cut(s) | 49, 1680, 1689 |
| Bsp19I | CCATGG | 1 cut(s) | 1071 |
| BspACI | CCGC | 4 cut(s) | 92, 762, 1054, 1167 |
| BspANI | GGCC | 5 cut(s) | 608, 830, 922, 1070, 1146 |
| BspDI | ATCGAT | 1 cut(s) | 178 |
| BspHI | TCATGA | 1 cut(s) | 1546 |
| BspLI | GGNNCC | 9 cut(s) | 76, 189, 490, 519, 1069, 1209, 1259, 1618, 1686 |
| BspMAI | CTGCAG | 1 cut(s) | 171 |
| BspMI | ACCTGC | 2 cut(s) | 883, 1142 |
| BspPI | GGATC | 5 cut(s) | 752, 1214, 1430, 1479, 1603 |
| BspT107I | GGYRCC | 3 cut(s) | 187, 488, 517 |
| BsrDI | GCAATG | 2 cut(s) | 1317, 1815 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BsrI | ACTGG | 7 cut(s) | 191, 350, 499, 660, 717, 771, 1766 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 8 cut(s) | 293, 886, 910, 1049, 1071, 1211, 1261, 1688 |
| BssT1I | CCWWGG | 3 cut(s) | 886, 910, 1071 |
| Bst4CI | ACNGT | 1 cut(s) | 1796 |
| Bst6I | CTCTTC | 5 cut(s) | 21, 474, 1054, 1726, 1853 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 3 cut(s) | 90, 522, 778 |
| BstDSI | CCRYGG | 1 cut(s) | 1071 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1176, 1624 |
| BstF5I | GGATG | 5 cut(s) | 100, 799, 1386, 1392, 1849 |
| BstHHI | GCGC | 1 cut(s) | 88 |
| BstMAI | GTCTC | 2 cut(s) | 966, 1858 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 83, 455, 773, 1076, 1328, 1684 |
| BstNSI | RCATGY | 1 cut(s) | 780 |
| BstSFI | CTRYAG | 1 cut(s) | 167 |
| BstV1I | GCAGC | 3 cut(s) | 754, 776, 1558 |
| BstX2I | RGATCY | 1 cut(s) | 1595 |
| BstYI | RGATCY | 1 cut(s) | 1595 |
| Bsu15I | ATCGAT | 1 cut(s) | 178 |
| BsuRI | GGCC | 5 cut(s) | 608, 830, 922, 1070, 1146 |
| BsuTUI | ATCGAT | 1 cut(s) | 178 |
| BtgI | CCRYGG | 1 cut(s) | 1071 |
| BtrI | CACGTC | 1 cut(s) | 1744 |
| BtsCI | GGATG | 5 cut(s) | 100, 799, 1386, 1392, 1849 |
| BtsIMutI | CAGTG | 3 cut(s) | 492, 724, 778 |
| BveI | ACCTGC | 2 cut(s) | 883, 1142 |
| Cac8I | GCNNGC | 3 cut(s) | 90, 522, 778 |
| CaiI | CAGNNNCTG | 2 cut(s) | 197, 1157 |
| CciI | TCATGA | 1 cut(s) | 1546 |
| CfoI | GCGC | 1 cut(s) | 88 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| ClaI | ATCGAT | 1 cut(s) | 178 |
| CsiI | ACCWGGT | 1 cut(s) | 1195 |
| Csp6I | GTAC | 2 cut(s) | 124, 1025 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 598, 633, 1827, 1862 |
| CviAII | CATG | 8 cut(s) | 777, 925, 955, 1072, 1087, 1337, 1418, 1547 |
| CviQI | GTAC | 2 cut(s) | 124, 1025 |
| DraI | TTTAAA | 1 cut(s) | 852 |
| EaeI | YGGCCR | 1 cut(s) | 606 |
| Eam1104I | CTCTTC | 5 cut(s) | 21, 474, 1054, 1726, 1853 |
| EarI | CTCTTC | 5 cut(s) | 21, 474, 1054, 1726, 1853 |
| Eco130I | CCWWGG | 3 cut(s) | 886, 910, 1071 |
| Eco24I | GRGCYC | 1 cut(s) | 1689 |
| Eco47I | GGWCC | 8 cut(s) | 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800 |
| Eco57I | CTGAAG | 1 cut(s) | 486 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1176, 1624 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1037, 1144, 1154, 1208 |
| EcoRI | GAATTC | 1 cut(s) | 481 |
| EcoT14I | CCWWGG | 3 cut(s) | 886, 910, 1071 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 1 cut(s) | 1689 |
| ErhI | CCWWGG | 3 cut(s) | 886, 910, 1071 |
| Esp3I | CGTCTC | 1 cut(s) | 1858 |
| FaeI | CATG | 8 cut(s) | 780, 928, 958, 1075, 1090, 1340, 1421, 1550 |
| FaqI | GGGAC | 3 cut(s) | 179, 1329, 1778 |
| FatI | CATG | 8 cut(s) | 776, 924, 954, 1071, 1086, 1336, 1417, 1546 |
| FauI | CCCGC | 2 cut(s) | 769, 1047 |
| FauNDI | CATATG | 1 cut(s) | 384 |
| FbaI | TGATCA | 1 cut(s) | 1822 |
| Fnu4HI | GCNGC | 3 cut(s) | 765, 768, 1572 |
| FokI | GGATG | 5 cut(s) | 107, 806, 1393, 1399, 1856 |
| FriOI | GRGCYC | 1 cut(s) | 1689 |
| Fsp4HI | GCNGC | 3 cut(s) | 765, 768, 1572 |
| FspBI | CTAG | 2 cut(s) | 321, 1482 |
| GlaI | GCGC | 1 cut(s) | 87 |
| GluI | GCNGC | 3 cut(s) | 765, 768, 1572 |
| GsaI | CCCAGC | 4 cut(s) | 942, 1107, 1326, 1349 |
| HaeIII | GGCC | 5 cut(s) | 608, 830, 922, 1070, 1146 |
| HapII | CCGG | 4 cut(s) | 267, 293, 1681, 1814 |
| HhaI | GCGC | 1 cut(s) | 88 |
| Hin1II | CATG | 8 cut(s) | 780, 928, 958, 1075, 1090, 1340, 1421, 1550 |
| Hin6I | GCGC | 1 cut(s) | 86 |
| HinP1I | GCGC | 1 cut(s) | 86 |
| HincII | GTYRAC | 1 cut(s) | 402 |
| HindII | GTYRAC | 1 cut(s) | 402 |
| HinfI | GANTC | 3 cut(s) | 222, 431, 1487 |
| HpaII | CCGG | 4 cut(s) | 267, 293, 1681, 1814 |
| HphI | GGTGA | 2 cut(s) | 697, 1514 |
| Hpy166II | GTNNAC | 7 cut(s) | 402, 639, 877, 1016, 1046, 1342, 1611 |
| Hpy188I | TCNGA | 8 cut(s) | 51, 184, 234, 1519, 1600, 1624, 1669, 1879 |
| Hpy188III | TCNNGA | 8 cut(s) | 248, 278, 329, 1401, 1547, 1637, 1785, 1833 |
| Hpy8I | GTNNAC | 7 cut(s) | 402, 639, 877, 1016, 1046, 1342, 1611 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 1731 |
| HpyAV | CCTTC | 4 cut(s) | 331, 510, 682, 912 |
| HpyCH4III | ACNGT | 1 cut(s) | 1796 |
| HpyCH4IV | ACGT | 2 cut(s) | 611, 1743 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 83, 455, 773, 1076, 1328, 1684 |
| HpySE526I | ACGT | 2 cut(s) | 611, 1743 |
| Hsp92II | CATG | 8 cut(s) | 780, 928, 958, 1075, 1090, 1340, 1421, 1550 |
| HspAI | GCGC | 1 cut(s) | 86 |
| Ksp22I | TGATCA | 1 cut(s) | 1822 |
| LmnI | GCTCC | 9 cut(s) | 10, 60, 74, 863, 912, 1112, 1336, 1675, 1684 |
| Lsp1109I | GCAGC | 3 cut(s) | 754, 776, 1558 |
| LweI | GCATC | 5 cut(s) | 162, 184, 637, 1423, 1642 |
| MabI | ACCWGGT | 1 cut(s) | 1195 |
| MaeI | CTAG | 2 cut(s) | 321, 1482 |
| MaeII | ACGT | 2 cut(s) | 611, 1743 |
| MaeIII | GTNAC | 4 cut(s) | 508, 1247, 1712, 1739 |
| MfeI | CAATTG | 1 cut(s) | 591 |
| MflI | RGATCY | 1 cut(s) | 1595 |
| MhlI | GDGCHC | 3 cut(s) | 49, 1680, 1689 |
| MlyI | GAGTC | 2 cut(s) | 216, 1496 |
| MmeI | TCCRAC | 4 cut(s) | 133, 286, 1090, 1247 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 316 |
| MseI | TTAA | 5 cut(s) | 147, 552, 696, 851, 1305 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1638, 1879 |
| MspA1I | CMGCKG | 2 cut(s) | 506, 767 |
| MspI | CCGG | 4 cut(s) | 267, 293, 1681, 1814 |
| MunI | CAATTG | 1 cut(s) | 591 |
| Mva1269I | GAATGC | 2 cut(s) | 1195, 1287 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 83, 455, 773, 1076, 1328, 1684 |
| NciI | CCSGG | 2 cut(s) | 294, 1682 |
| NcoI | CCATGG | 1 cut(s) | 1071 |
| NdeI | CATATG | 1 cut(s) | 384 |
| NlaIII | CATG | 8 cut(s) | 780, 928, 958, 1075, 1090, 1340, 1421, 1550 |
| NlaIV | GGNNCC | 9 cut(s) | 76, 189, 490, 519, 1069, 1209, 1259, 1618, 1686 |
| NmuCI | GTSAC | 1 cut(s) | 1739 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| NspI | RCATGY | 1 cut(s) | 780 |
| PaeI | GCATGC | 1 cut(s) | 780 |
| PagI | TCATGA | 1 cut(s) | 1546 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1735 |
| PctI | GAATGC | 2 cut(s) | 1195, 1287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 316 |
| PfeI | GAWTC | 1 cut(s) | 431 |
| PfoI | TCCNGGA | 2 cut(s) | 1156, 1276 |
| PkrI | GCNGC | 3 cut(s) | 766, 769, 1573 |
| PleI | GAGTC | 2 cut(s) | 216, 1495 |
| PpsI | GAGTC | 2 cut(s) | 216, 1495 |
| PpuMI | RGGWCCY | 3 cut(s) | 1037, 1154, 1208 |
| Psp5II | RGGWCCY | 3 cut(s) | 1037, 1154, 1208 |
| PspFI | CCCAGC | 4 cut(s) | 938, 1103, 1322, 1345 |
| PspN4I | GGNNCC | 9 cut(s) | 76, 189, 490, 519, 1069, 1209, 1259, 1618, 1686 |
| PspPPI | RGGWCCY | 3 cut(s) | 1037, 1154, 1208 |
| PstI | CTGCAG | 1 cut(s) | 171 |
| PstNI | CAGNNNCTG | 2 cut(s) | 197, 1157 |
| PsuI | RGATCY | 1 cut(s) | 1595 |
| PvuII | CAGCTG | 2 cut(s) | 506, 767 |
| RsaI | GTAC | 2 cut(s) | 125, 1026 |
| RsaNI | GTAC | 2 cut(s) | 124, 1025 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1638, 1879 |
| SaqAI | TTAA | 5 cut(s) | 147, 552, 696, 851, 1305 |
| SatI | GCNGC | 3 cut(s) | 765, 768, 1572 |
| SchI | GAGTC | 2 cut(s) | 216, 1496 |
| SduI | GDGCHC | 3 cut(s) | 49, 1680, 1689 |
| SexAI | ACCWGGT | 1 cut(s) | 1195 |
| SfaNI | GCATC | 5 cut(s) | 162, 184, 637, 1423, 1642 |
| SfcI | CTRYAG | 1 cut(s) | 167 |
| SinI | GGWCC | 8 cut(s) | 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1638, 1879 |
| SmlI | CTYRAG | 2 cut(s) | 372, 1576 |
| SmoI | CTYRAG | 2 cut(s) | 372, 1576 |
| SphI | GCATGC | 1 cut(s) | 780 |
| SsiI | CCGC | 4 cut(s) | 92, 762, 1054, 1167 |
| SspMI | CTAG | 2 cut(s) | 321, 1482 |
| StyI | CCWWGG | 3 cut(s) | 886, 910, 1071 |
| TaaI | ACNGT | 1 cut(s) | 1796 |
| TaiI | ACGT | 2 cut(s) | 614, 1746 |
| TaqI | TCGA | 5 cut(s) | 178, 1237, 1474, 1729, 1834 |
| TfiI | GAWTC | 1 cut(s) | 431 |
| Tru1I | TTAA | 5 cut(s) | 147, 552, 696, 851, 1305 |
| Tru9I | TTAA | 5 cut(s) | 147, 552, 696, 851, 1305 |
| TscAI | CASTG | 3 cut(s) | 499, 724, 778 |
| TseFI | GTSAC | 1 cut(s) | 1739 |
| TseI | GCWGC | 3 cut(s) | 764, 767, 1571 |
| Tsp45I | GTSAC | 1 cut(s) | 1739 |
| TspDTI | ATGAA | 9 cut(s) | 111, 299, 494, 548, 585, 723, 941, 971, 1202 |
| TspGWI | ACGGA | 2 cut(s) | 572, 1266 |
| TspRI | CASTG | 3 cut(s) | 499, 724, 778 |
| VpaK11BI | GGWCC | 8 cut(s) | 497, 1037, 1046, 1154, 1169, 1208, 1265, 1800 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1176, 1624 |
| XapI | RAATTY | 6 cut(s) | 19, 288, 452, 481, 958, 985 |
| XceI | RCATGY | 1 cut(s) | 780 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 616 |
| XmnI | GAANNNNTTC | 1 cut(s) | 316 |
| XspI | CTAG | 2 cut(s) | 321, 1482 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |