Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

22401133 .. 22402385

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATGATGATGCGTAAACTATTTTTACTTTGTATCTTGGTTTTGGGTGTCTCATCACAATTCAATGTTGTTCAATCTGCCAATGCGCCTGCTCCTTCGCCGAAACAAGCCAACCCGGCTCCCCTGCCGCCCTCGCCGCCTCCTCCAGCGGCTTCTCCGGCTCATACTCCCACCGCTTCTCCTCCGGCATCCCCTCCGAGCCCTCCGACTCAGTCTCCGCCTGCGGCTTCTCCCAAAGCCTCTCCGCCAACTTCGACTCCTCCTCCGGCAGCAGCCTCGCCGGCCGTCTCACCGGCAACTCCTCCTCCGGCGGCACCCCTTTCTCCAGCGGCTAGCCCGAAGGCGGCAAATGGGTCGGCGCCGGTTGAAGCACCCGCCACGCCCCCGTCGACTGTGTCCTCTCCCGTTGCTACTCCGGTGAGCGCTCCGGAGTCAAGTCCGCCGGTTGCAGAGACTCCTGAGATTGCGGCAAGTCCGTCTTCGTCGAGCATTCCTTCTTCTGCAAGTCCGTCGGATTCGCCCATGTTCCCGTCGAGCAGTAGCCCGCCGAGCCCGACGCCGCCAGGTGTGTCGCCGGTGGAGGGTCCCGCTAATGATGATACGTCGGGTTCGGAATCCAAGTATGGAGTTGGGTTCATTTTGAGTGGGCTCTCTATCTGGGTCGCTTTGGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

21.73

Weight (kDa)

4.87

Isoelectric Point (pI)

112.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	313, 358
AccI	GTMKAC	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	359, 557
AfeI	AGCGCT	1 cut(s)	424
AfiI	CCNNNNNNNGG	2 cut(s)	343, 581
AgsI	TTSAA	3 cut(s)	64, 74, 368
AjnI	CCWGG	1 cut(s)	562
Alw26I	GTCTC	4 cut(s)	55, 219, 292, 446
Aor13HI	TCCGGA	1 cut(s)	427
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	269, 272
AspLEI	GCGC	3 cut(s)	88, 361, 425
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	282, 430
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	313, 358
BanII	GRGCYC	3 cut(s)	203, 554, 651
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	281, 284
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	6 cut(s)	258, 292, 336, 370, 492, 526
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	4 cut(s)	55, 219, 292, 446
BfaI	CTAG	1 cut(s)	333
BfoI	RGCGCY	2 cut(s)	362, 426
BglI	GCCNNNNNGGC	2 cut(s)	116, 281
Bme1390I	CCNGG	2 cut(s)	116, 564
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	5 cut(s)	120, 315, 360, 585, 586
BmrFI	CCNGG	2 cut(s)	116, 564
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	2 cut(s)	129, 309
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	359, 557
BsaWI	WCCGGW	2 cut(s)	415, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 581
Bse118I	RCCGGY	5 cut(s)	280, 292, 361, 442, 574
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	343, 581
BseMII	CTCAG	2 cut(s)	224, 450
BseRI	GAGGAG	6 cut(s)	132, 171, 249, 252, 291, 294
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	281, 284
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	2 cut(s)	313, 358
BsiEI	CGRYCG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	343, 581
BsmAI	GTCTC	4 cut(s)	55, 219, 292, 446
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	3 cut(s)	203, 554, 651
Bsp13I	TCCGGA	1 cut(s)	427
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	223, 451
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	5 cut(s)	120, 315, 360, 585, 586
BspOI	GCTAGC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	313, 358
BsrFI	RCCGGY	5 cut(s)	280, 292, 361, 442, 574
BssAI	RCCGGY	5 cut(s)	280, 292, 361, 442, 574
BssNI	GRCGYC	2 cut(s)	359, 557
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	394
BstACI	GRCGYC	2 cut(s)	359, 557
BstC8I	GCNNGC	5 cut(s)	90, 222, 282, 334, 545
BstDEI	CTNAG	2 cut(s)	210, 459
BstF5I	GGATG	1 cut(s)	188
BstH2I	RGCGCY	2 cut(s)	362, 426
BstHHI	GCGC	3 cut(s)	88, 361, 425
BstMAI	GTCTC	4 cut(s)	55, 219, 292, 446
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 133, 136, 158, 281, 549
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	114, 562
BstV1I	GCAGC	2 cut(s)	281, 284
BstV2I	GAAGAC	1 cut(s)	471
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	5 cut(s)	90, 222, 282, 334, 545
CfoI	GCGC	3 cut(s)	88, 361, 425
Cfr10I	RCCGGY	5 cut(s)	280, 292, 361, 442, 574
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	565
CviAII	CATG	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	210, 459
DinI	GGCGCC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
EciI	GGCGGA	3 cut(s)	207, 234, 429
EclXI	CGGCCG	1 cut(s)	282
Eco24I	GRGCYC	3 cut(s)	203, 554, 651
Eco47I	GGWCC	1 cut(s)	584
Eco47III	AGCGCT	1 cut(s)	424
Eco52I	CGGCCG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	3 cut(s)	203, 554, 651
EgeI	GGCGCC	1 cut(s)	360
EheI	GGCGCC	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	1 cut(s)	526
FaiI	YATR	3 cut(s)	165, 524, 624
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	1 cut(s)	522
FauI	CCCGC	3 cut(s)	382, 552, 595
FblI	GTMKAC	1 cut(s)	389
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	3 cut(s)	203, 554, 651
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	3 cut(s)	87, 360, 424
GsuI	CTGGAG	2 cut(s)	129, 309
HaeII	RGCGCY	2 cut(s)	362, 426
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	3 cut(s)	88, 361, 425
Hin1I	GRCGYC	2 cut(s)	359, 557
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	3 cut(s)	86, 359, 423
HinP1I	GCGC	3 cut(s)	86, 359, 423
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	6 cut(s)	208, 256, 431, 454, 515, 614
HphI	GGTGA	2 cut(s)	282, 430
Hpy166II	GTNNAC	2 cut(s)	17, 390
Hpy188I	TCNGA	4 cut(s)	198, 207, 514, 613
Hpy188III	TCNNGA	2 cut(s)	428, 458
Hpy8I	GTNNAC	2 cut(s)	17, 390
Hpy99I	CGWCG	6 cut(s)	391, 487, 514, 535, 559, 607
HpyAV	CCTTC	3 cut(s)	105, 334, 504
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	2 cut(s)	449, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 133, 136, 158, 281, 549
HpyF3I	CTNAG	2 cut(s)	210, 459
HpySE526I	ACGT	1 cut(s)	602
Hsp92I	GRCGYC	2 cut(s)	359, 557
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	3 cut(s)	86, 359, 423
KasI	GGCGCC	1 cut(s)	358
KflI	GGGWCCC	1 cut(s)	584
Kpn2I	TCCGGA	1 cut(s)	427
KroI	GCCGGC	1 cut(s)	280
KroNI	GCCGGC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	97, 124, 430
Lsp1109I	GCAGC	2 cut(s)	281, 284
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	602
MboII	GAAGA	2 cut(s)	471, 489
MhlI	GDGCHC	3 cut(s)	203, 554, 651
MluCI	AATT	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	359
MlyI	GAGTC	4 cut(s)	202, 250, 440, 448
MmeI	TCCRAC	2 cut(s)	230, 492
MroI	TCCGGA	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	149, 329
MspR9I	CCNGG	2 cut(s)	116, 564
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	6 cut(s)	116, 133, 136, 158, 281, 549
NaeI	GCCGGC	1 cut(s)	282
NarI	GGCGCC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	116
NgoMIV	GCCGGC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	5 cut(s)	120, 315, 360, 585, 586
NmeAIII	GCCGAG	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PctI	GAATGC	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	515, 614
PflFI	GACNNNGTC	2 cut(s)	211, 394
PleI	GAGTC	4 cut(s)	202, 250, 439, 448
PluTI	GGCGCC	1 cut(s)	362
PpsI	GAGTC	4 cut(s)	202, 250, 439, 448
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	120, 315, 360, 585, 586
PspPI	GGNCC	1 cut(s)	584
PspPPI	RGGWCCY	1 cut(s)	584
PsyI	GACNNNGTC	2 cut(s)	211, 394
SalI	GTCGAC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	4 cut(s)	202, 250, 440, 448
ScrFI	CCNGG	2 cut(s)	116, 564
SduI	GDGCHC	3 cut(s)	203, 554, 651
SetI	ASST	2 cut(s)	568, 605
SfaNI	GCATC	1 cut(s)	197
SfoI	GGCGCC	1 cut(s)	360
SgrAI	CRCCGGYG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	584
Sse9I	AATT	1 cut(s)	59
SspDI	GGCGCC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	114, 562
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	4 cut(s)	254, 389, 485, 533
TasI	AATT	1 cut(s)	59
TauI	GCSGC	9 cut(s)	130, 139, 152, 227, 314, 332, 347, 470, 562
TfiI	GAWTC	2 cut(s)	515, 614
TseI	GCWGC	2 cut(s)	269, 272
TspDTI	ATGAA	1 cut(s)	625
TspGWI	ACGGA	2 cut(s)	465, 498
Tth111I	GACNNNGTC	2 cut(s)	211, 394
VpaK11BI	GGWCC	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.