Rorug02G0290800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011546
Physical Location & Seq
Forward (+)
31861952 .. 31864706
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0290800.1

Sequence Viewer

Length: 918 bp
ATGCTTAGGCATTTTGACAAGGTCAAGCCTTCAAGCACCCCCATGATCATTCGTAGTCTTGACCCTGAAAAGGATTTTCTTCGTTCAAAGGATGATGACGAAGATGTGCTAGAGGCAAGAGTGTCTTACTTGAGTACAATAGGCGTATTATTATACTTATCTCAATGCACAAGACTGGACATCTCATTTGCCATGAACTTGTTAGCTAAGAGAGATGATGGATTCGGACCCATCACACACAAGGAACGCCACCAACACTGGCCTGCGTCCACTATCCCCATCCCAAAACAACATGTGTTTTGGAAGGTTTTTAATGAGGCAACGAGAGGAGCACCACGTTTGGGCGACACAAGAGGGAGTGTTCAACGGGCCCATCCACGAAGTACAACAAACACAAGAAGGCCGAGAGCGAAGTGGATCACTCCTCCCACTGGGAGACTTAAGATCAATGTGGGTGGGAGCTATAGAGCAAATTATGGCGATGGTGGAATTGGTGTTGTGATACGGGACGAGTTTGGTACTTGCTTGGCAGCTATGACGCGATATTTTCCACATGTTAGTTCTCCGTTTCATATGGAGGCAGAAGCTTGTAGGGCAGGCCTACTCCTGGCTATATACCACGGGTGGGATGGTTTCCAACTTGAAAGTGATTGCTCACTGATGGTTGCTGCCCTAAATCAAAATATGGAGGACCGGTCTGATGTCACTCATGTCTTCCGTGAAGCAAATGGTGTAGCTAATAGACTTGCTCACCTTGCTAGTTATAGTTTACTAGATGATGTTTGGTTAGATGAGGCACATGCTATTATTCAGGATGTCCTCTACGAAGATTCTTGTAATTTTGCACGAGGTGAAGGTCCTATGTCCCCCTTGTTGCAAGTTTTCAATTCTAATGCAATAAGTCAGGCGTGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.23

Weight (kDa)

6.63

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 150 - 233 7.3e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 541
AclWI GGATC 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 3 cut(s) 136, 385, 520
AfiI CCNNNNNNNGG 5 cut(s) 70, 341, 431, 607, 625
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 2 cut(s) 292, 553
AgeI ACCGGT 1 cut(s) 693
AgsI TTSAA 5 cut(s) 33, 87, 365, 644, 886
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 5 cut(s) 206, 462, 533, 587, 737
AluI AGCT 5 cut(s) 206, 462, 533, 587, 737
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 425
AoxI GGCC 4 cut(s) 260, 369, 401, 598
ApaI GGGCCC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 530, 668
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 693
AspS9I GGNCC 5 cut(s) 227, 369, 370, 691, 857
AsuHPI GGTGA 2 cut(s) 743, 863
AvaII GGWCC 3 cut(s) 227, 691, 857
BaeGI GKGCMC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 373
BauI CACGAG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 542, 655
BccI CCATC 7 cut(s) 212, 239, 287, 381, 476, 623, 655
BciT130I CCWGG 1 cut(s) 608
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 3 cut(s) 110, 759, 773
BfmI CTRYAG 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 2 cut(s) 531, 669
BlsI GCNGC 2 cut(s) 532, 670
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 3 cut(s) 227, 691, 857
BmgT120I GGNCC 5 cut(s) 227, 369, 370, 691, 857
BmiI GGNNCC 2 cut(s) 229, 371
BmrFI CCNGG 1 cut(s) 608
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 706
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 619
BsaWI WCCGGW 1 cut(s) 693
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 341, 431, 607, 625
Bse118I RCCGGY 1 cut(s) 693
Bse1I ACTGG 3 cut(s) 180, 263, 436
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 5 cut(s) 97, 279, 373, 634, 820
BseLI CCNNNNNNNGG 5 cut(s) 70, 341, 431, 607, 625
BseNI ACTGG 3 cut(s) 180, 263, 436
BseRI GAGGAG 2 cut(s) 342, 414
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 2 cut(s) 542, 655
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 4 cut(s) 262, 371, 403, 600
BshTI ACCGGT 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 694
BslFI GGGAC 2 cut(s) 521, 850
BslI CCNNNNNNNGG 5 cut(s) 70, 341, 431, 607, 625
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 521, 850
BsnI GGCC 4 cut(s) 262, 371, 403, 600
Bsp120I GGGCCC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 334, 373
Bsp143I GATC 3 cut(s) 45, 417, 444
BspANI GGCC 4 cut(s) 262, 371, 403, 600
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 229, 371
BspPI GGATC 1 cut(s) 425
BspTI CTTAAG 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 693
BsrI ACTGG 3 cut(s) 180, 263, 436
BssAI RCCGGY 1 cut(s) 693
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 3 cut(s) 45, 417, 444
BssSI CACGAG 1 cut(s) 846
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 608
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 264, 598
BstDEI CTNAG 2 cut(s) 5, 207
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 5 cut(s) 97, 279, 373, 634, 820
BstFNI CGCG 1 cut(s) 541
BstKTI GATC 3 cut(s) 48, 420, 447
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 3 cut(s) 45, 417, 444
BstMWI GCNNNNNNNGC 2 cut(s) 593, 755
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 3 cut(s) 296, 557, 803
BstSCI CCNGG 1 cut(s) 606
BstSFI CTRYAG 1 cut(s) 463
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 542, 655
BstV2I GAAGAC 1 cut(s) 706
BsuRI GGCC 4 cut(s) 262, 371, 403, 600
BtgI CCRYGG 1 cut(s) 619
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 5 cut(s) 97, 279, 373, 634, 820
BtsIMutI CAGTG 3 cut(s) 256, 429, 656
Cac8I GCNNGC 2 cut(s) 264, 598
Cfr10I RCCGGY 1 cut(s) 693
Cfr13I GGNCC 5 cut(s) 227, 369, 370, 691, 857
CseI GACGC 2 cut(s) 255, 547
Csp6I GTAC 3 cut(s) 135, 384, 519
CspAI ACCGGT 1 cut(s) 693
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 6 cut(s) 43, 193, 293, 554, 710, 800
CviQI GTAC 3 cut(s) 135, 384, 519
DdeI CTNAG 2 cut(s) 5, 207
DpnI GATC 3 cut(s) 47, 419, 446
DpnII GATC 3 cut(s) 45, 417, 444
DraIII CACNNNGTG 1 cut(s) 851
Eco147I AGGCCT 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 227, 691, 857
EcoO109I RGGNCCY 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 6 cut(s) 46, 196, 296, 557, 713, 803
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 2 cut(s) 521, 850
FatI CATG 6 cut(s) 42, 192, 292, 553, 709, 799
FauNDI CATATG 1 cut(s) 573
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 531, 669
FokI GGATG 5 cut(s) 104, 266, 360, 641, 827
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 531, 669
FspBI CTAG 3 cut(s) 110, 759, 773
GluI GCNGC 2 cut(s) 531, 669
HaeIII GGCC 4 cut(s) 262, 371, 403, 600
HapII CCGG 1 cut(s) 694
HgaI GACGC 2 cut(s) 255, 547
Hin1II CATG 6 cut(s) 46, 196, 296, 557, 713, 803
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 222, 830
HpaII CCGG 1 cut(s) 694
HphI GGTGA 2 cut(s) 743, 863
Hpy166II GTNNAC 2 cut(s) 270, 770
Hpy188I TCNGA 2 cut(s) 227, 700
Hpy188III TCNNGA 2 cut(s) 59, 812
Hpy8I GTNNAC 2 cut(s) 270, 770
HpyAV CCTTC 4 cut(s) 39, 298, 393, 848
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 4 cut(s) 168, 845, 877, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 755
HpyF3I CTNAG 2 cut(s) 5, 207
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 6 cut(s) 46, 196, 296, 557, 713, 803
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 3 cut(s) 45, 417, 444
LmnI GCTCC 2 cut(s) 329, 459
Lsp1109I GCAGC 2 cut(s) 542, 655
MaeI CTAG 3 cut(s) 110, 759, 773
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 703
MalI GATC 3 cut(s) 47, 419, 446
MboI GATC 3 cut(s) 45, 417, 444
MboII GAAGA 4 cut(s) 71, 113, 706, 839
MhlI GDGCHC 2 cut(s) 334, 373
MluCI AATT 4 cut(s) 472, 489, 838, 886
MmeI TCCRAC 1 cut(s) 661
MseI TTAA 2 cut(s) 312, 441
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 694
MspR9I CCNGG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 593, 755
NdeI CATATG 1 cut(s) 573
NdeII GATC 3 cut(s) 45, 417, 444
NlaIII CATG 6 cut(s) 46, 196, 296, 557, 713, 803
NlaIV GGNNCC 2 cut(s) 229, 371
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 703
NspI RCATGY 3 cut(s) 296, 557, 803
PceI AGGCCT 1 cut(s) 600
PciI ACATGT 2 cut(s) 292, 553
PfeI GAWTC 2 cut(s) 222, 830
PflFI GACNNNGTC 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 693
PkrI GCNGC 2 cut(s) 532, 670
PpuMI RGGWCCY 1 cut(s) 857
PscI ACATGT 2 cut(s) 292, 553
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 229, 371
PspOMI GGGCCC 1 cut(s) 369
PspPI GGNCC 5 cut(s) 227, 369, 370, 691, 857
PspPPI RGGWCCY 1 cut(s) 857
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 3 cut(s) 136, 385, 520
RsaNI GTAC 3 cut(s) 135, 384, 519
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 312, 441
SatI GCNGC 2 cut(s) 531, 669
Sau3AI GATC 3 cut(s) 45, 417, 444
Sau96I GGNCC 5 cut(s) 227, 369, 370, 691, 857
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 334, 373
SfcI CTRYAG 1 cut(s) 463
SinI GGWCC 3 cut(s) 227, 691, 857
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 130, 440
SmoI CTYRAG 2 cut(s) 130, 440
Sse9I AATT 4 cut(s) 472, 489, 838, 886
SseBI AGGCCT 1 cut(s) 600
SspMI CTAG 3 cut(s) 110, 759, 773
StuI AGGCCT 1 cut(s) 600
StyD4I CCNGG 1 cut(s) 606
TaiI ACGT 1 cut(s) 340
TasI AATT 4 cut(s) 472, 489, 838, 886
TatI WGTACW 2 cut(s) 134, 383
TfiI GAWTC 2 cut(s) 222, 830
Tru1I TTAA 2 cut(s) 312, 441
Tru9I TTAA 2 cut(s) 312, 441
TscAI CASTG 3 cut(s) 263, 436, 663
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 2 cut(s) 530, 668
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 2 cut(s) 209, 560
TspGWI ACGGA 2 cut(s) 555, 707
TspRI CASTG 3 cut(s) 263, 436, 663
Tth111I GACNNNGTC 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 227, 691, 857
XceI RCATGY 3 cut(s) 296, 557, 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XspI CTAG 3 cut(s) 110, 759, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.