Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

28840723 .. 28841472

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1200000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCATAACAAATTTGTTCTACTCTCTCTTCTTCTCCTCTGCATCGTCCCGCATTTCAATGTGGTACATGCAGGCAATGCGCCTGCTCCTTCCCCCAAACCCTCTACACCCTCCACAAACCCGCCACCGCAACCCTCTCCGGCTTCTTCTCCGACCACTTCTCCTGCAACTCCTCCGGCATCCTCTCCGACTCAGTCGCCTCCTTCGCCTTCTCCCAAAACCTCTCCGCCAACTTCTCCGGCTTCGACCCCACCCACCGTCTCTCCAGCGTCGACCCCACCCACCACCTCTCCGCCGTCGACCCCACCCACCACCTCTCCGCCGTCGACCCCACCCACCATCTCTCCGCCGTCTCCTCCCGCACCGGTTTCTCCAGCGAAGAGCCCGTCCAAGAGTGTGTCTTCTCCGGTTCAATCTCCGGCGTCCCCTCCGCCCACCGTTGCCTCTCCGGCCAAAACTCCGGTGAGCGCTCCGAAGGAAAGTCCAGTGGGGGCTGCGCCAGTTGCAGAGGGTCCTGAGATTGCAGCGACCCCCTCGTTACCAGTAGGCATTCCTTCGAGTTCAGCAACACCGGCAGAGTCCCCGGGAATGTTCCCATCAAGCGGTAGCCCACCGATCCCGGCGCCGGCGAGTCTGTCACCGGATAGTGCTGCGCAGGGTCCATCAAGCGATGATTCGTCGGCTTCGGGTTTGAATGCGGCTCGGGTGGTTTTGAGCGGGTTGTCTATCTGGGTTGCTTTGGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

24.05

Weight (kDa)

7.93

Isoelectric Point (pI)

114.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	622
AccBSI	CCGCTC	1 cut(s)	717
AccI	GTMKAC	3 cut(s)	272, 299, 326
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	2 cut(s)	422, 623
AfaI	GTAC	1 cut(s)	66
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	2 cut(s)	602, 625
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	58, 413, 694
Alw26I	GTCTC	2 cut(s)	265, 357
AlwI	GGATC	1 cut(s)	610
Ama87I	CYCGRG	2 cut(s)	583, 702
Aor51HI	AGCGCT	1 cut(s)	469
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	494, 524, 650
ApoI	RAATTY	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AsiGI	ACCGGT	1 cut(s)	364
AspLEI	GCGC	5 cut(s)	82, 470, 499, 625, 655
AspS9I	GGNCC	2 cut(s)	512, 659
AsuC2I	CCSGG	3 cut(s)	584, 585, 620
AsuHPI	GGTGA	2 cut(s)	475, 630
AvaI	CYCGRG	2 cut(s)	583, 702
AvaII	GGWCC	2 cut(s)	512, 659
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	481, 536, 637
BccI	CCATC	3 cut(s)	347, 604, 670
BceAI	ACGGC	3 cut(s)	280, 307, 334
BcnI	CCSGG	3 cut(s)	584, 585, 620
BcoDI	GTCTC	2 cut(s)	265, 357
BfoI	RGCGCY	2 cut(s)	471, 626
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	495, 525, 651, 699
BlsI	GCNGC	4 cut(s)	496, 526, 652, 700
Bme1390I	CCNGG	3 cut(s)	584, 585, 620
Bme18I	GGWCC	2 cut(s)	512, 659
BmeT110I	CYCGRG	2 cut(s)	583, 702
BmgT120I	GGNCC	2 cut(s)	512, 659
BmiI	GGNNCC	3 cut(s)	513, 624, 660
BmrFI	CCNGG	3 cut(s)	584, 585, 620
BmsI	GCATC	2 cut(s)	51, 188
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	249, 357
BpuMI	CCSGG	3 cut(s)	584, 585, 620
BsaHI	GRCGYC	2 cut(s)	422, 623
BsaJI	CCNNGG	2 cut(s)	582, 583
BsaWI	WCCGGW	4 cut(s)	364, 406, 460, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 625
Bse118I	RCCGGY	3 cut(s)	364, 571, 625
Bse1I	ACTGG	3 cut(s)	485, 500, 542
Bse3DI	GCAATG	1 cut(s)	82
BseDI	CCNNGG	2 cut(s)	582, 583
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	602, 625
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	206, 507
BseNI	ACTGG	3 cut(s)	485, 500, 542
BseRI	GAGGAG	3 cut(s)	26, 162, 345
BseXI	GCAGC	3 cut(s)	481, 536, 637
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	622
BshTI	ACCGGT	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	583, 702
BslFI	GGGAC	3 cut(s)	32, 409, 565
BslI	CCNNNNNNNGG	2 cut(s)	602, 625
BsmAI	GTCTC	2 cut(s)	265, 357
BsmBI	CGTCTC	2 cut(s)	265, 357
BsmFI	GGGAC	3 cut(s)	32, 409, 565
BsmI	GAATGC	2 cut(s)	549, 700
BsnI	GGCC	1 cut(s)	452
BsoBI	CYCGRG	2 cut(s)	583, 702
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	615
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	2 cut(s)	205, 508
BspLI	GGNNCC	3 cut(s)	513, 624, 660
BspPI	GGATC	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	622
BsrBI	CCGCTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	82
BsrFI	RCCGGY	3 cut(s)	364, 571, 625
BsrI	ACTGG	3 cut(s)	485, 500, 542
BssAI	RCCGGY	3 cut(s)	364, 571, 625
BssECI	CCNNGG	2 cut(s)	582, 583
BssMI	GATC	1 cut(s)	615
BssNI	GRCGYC	2 cut(s)	422, 623
Bst4CI	ACNGT	2 cut(s)	259, 439
Bst6I	CTCTTC	2 cut(s)	33, 374
BstACI	GRCGYC	2 cut(s)	422, 623
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	73, 84, 627
BstDEI	CTNAG	2 cut(s)	192, 516
BstF5I	GGATG	1 cut(s)	179
BstH2I	RGCGCY	2 cut(s)	471, 626
BstHHI	GCGC	5 cut(s)	82, 470, 499, 625, 655
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	2 cut(s)	265, 357
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 205, 449, 503, 572
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	582, 583, 618
BstV1I	GCAGC	3 cut(s)	481, 536, 637
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	73, 84, 627
CfoI	GCGC	5 cut(s)	82, 470, 499, 625, 655
Cfr10I	RCCGGY	3 cut(s)	364, 571, 625
Cfr13I	GGNCC	2 cut(s)	512, 659
Cfr9I	CCCGGG	1 cut(s)	583
CseI	GACGC	2 cut(s)	258, 411
Csp6I	GTAC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	8 cut(s)	143, 242, 384, 452, 494, 609, 683, 701
CviKI_1	RGCY	8 cut(s)	143, 242, 384, 452, 494, 609, 683, 701
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	192, 516
DinI	GGCGCC	1 cut(s)	624
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	33, 374
EarI	CTCTTC	2 cut(s)	33, 374
EciI	GGCGGA	5 cut(s)	216, 282, 309, 336, 420
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	512, 659
Eco47III	AGCGCT	1 cut(s)	469
Eco88I	CYCGRG	2 cut(s)	583, 702
EcoO109I	RGGNCCY	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	386
EgeI	GGCGCC	1 cut(s)	624
EheI	GGCGCC	1 cut(s)	624
Esp3I	CGTCTC	2 cut(s)	265, 357
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	6, 69
FaqI	GGGAC	3 cut(s)	32, 409, 565
FatI	CATG	1 cut(s)	67
FauI	CCCGC	4 cut(s)	57, 129, 367, 710
FblI	GTMKAC	3 cut(s)	272, 299, 326
Fnu4HI	GCNGC	4 cut(s)	495, 525, 651, 699
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	495, 525, 651, 699
FspI	TGCGCA	1 cut(s)	654
GlaI	GCGC	5 cut(s)	81, 469, 498, 624, 654
GluI	GCNGC	4 cut(s)	495, 525, 651, 699
GsuI	CTGGAG	2 cut(s)	249, 357
HaeII	RGCGCY	2 cut(s)	471, 626
HaeIII	GGCC	1 cut(s)	452
HgaI	GACGC	2 cut(s)	258, 411
HhaI	GCGC	5 cut(s)	82, 470, 499, 625, 655
Hin1I	GRCGYC	2 cut(s)	422, 623
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	5 cut(s)	80, 468, 497, 623, 653
HinP1I	GCGC	5 cut(s)	80, 468, 497, 623, 653
HincII	GTYRAC	3 cut(s)	273, 300, 327
HindII	GTYRAC	3 cut(s)	273, 300, 327
HinfI	GANTC	4 cut(s)	190, 578, 631, 674
HphI	GGTGA	2 cut(s)	475, 630
Hpy166II	GTNNAC	3 cut(s)	273, 300, 327
Hpy188I	TCNGA	3 cut(s)	153, 189, 474
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	3 cut(s)	273, 300, 327
Hpy99I	CGWCG	4 cut(s)	274, 301, 328, 682
HpyAV	CCTTC	5 cut(s)	99, 213, 219, 469, 564
HpyCH4III	ACNGT	2 cut(s)	259, 439
HpyCH4V	TGCA	6 cut(s)	4, 42, 71, 167, 506, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 205, 449, 503, 572
HpyF3I	CTNAG	2 cut(s)	192, 516
Hsp92I	GRCGYC	2 cut(s)	422, 623
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	5 cut(s)	80, 468, 497, 623, 653
KasI	GGCGCC	1 cut(s)	622
KroI	GCCGGC	1 cut(s)	625
KroNI	GCCGGC	1 cut(s)	627
Kzo9I	GATC	1 cut(s)	615
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	2 cut(s)	91, 475
Lsp1109I	GCAGC	3 cut(s)	481, 536, 637
LweI	GCATC	2 cut(s)	51, 188
MaeIII	GTNAC	2 cut(s)	537, 636
MalI	GATC	1 cut(s)	617
MbiI	CCGCTC	1 cut(s)	717
MboI	GATC	1 cut(s)	615
MboII	GAAGA	5 cut(s)	20, 23, 138, 391, 393
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	623
MlyI	GAGTC	3 cut(s)	184, 587, 640
MmeI	TCCRAC	2 cut(s)	176, 212
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	625
MroNI	GCCGGC	1 cut(s)	625
MslI	CAYNNNNRTG	1 cut(s)	57
MspR9I	CCNGG	3 cut(s)	584, 585, 620
Mva1269I	GAATGC	2 cut(s)	549, 700
MwoI	GCNNNNNNNGC	5 cut(s)	77, 205, 449, 503, 572
NaeI	GCCGGC	1 cut(s)	627
NarI	GGCGCC	1 cut(s)	623
NciI	CCSGG	3 cut(s)	584, 585, 620
NdeII	GATC	1 cut(s)	615
NgoMIV	GCCGGC	1 cut(s)	625
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	513, 624, 660
NmuCI	GTSAC	1 cut(s)	636
NsbI	TGCGCA	1 cut(s)	654
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	2 cut(s)	549, 700
PdiI	GCCGGC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	674
PflFI	GACNNNGTC	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	496, 526, 652, 700
PleI	GAGTC	3 cut(s)	184, 586, 639
PluTI	GGCGCC	1 cut(s)	626
PpsI	GAGTC	3 cut(s)	184, 586, 639
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	513, 624, 660
PspPI	GGNCC	2 cut(s)	512, 659
PspPPI	RGGWCCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	57
SalI	GTCGAC	3 cut(s)	271, 298, 325
SapI	GCTCTTC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	495, 525, 651, 699
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	2 cut(s)	512, 659
SchI	GAGTC	3 cut(s)	184, 587, 640
ScrFI	CCNGG	3 cut(s)	584, 585, 620
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	3 cut(s)	224, 290, 317
SfaNI	GCATC	2 cut(s)	51, 188
SfoI	GGCGCC	1 cut(s)	624
SgrAI	CRCCGGYG	1 cut(s)	625
SinI	GGWCC	2 cut(s)	512, 659
SmaI	CCCGGG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	582, 583, 618
TaaI	ACNGT	2 cut(s)	259, 439
TaqI	TCGA	5 cut(s)	245, 272, 299, 326, 557
TasI	AATT	1 cut(s)	11
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	674
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	3 cut(s)	494, 524, 650
Tsp45I	GTSAC	1 cut(s)	636
TspMI	CCCGGG	1 cut(s)	583
TspRI	CASTG	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	512, 659
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	71
XmaI	CCCGGG	1 cut(s)	583
XmiI	GTMKAC	3 cut(s)	272, 299, 326
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.