Rroxscaffold_1G00026890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011546
Physical Location & Seq
Forward (+)
33836366 .. 33839584
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026890.1

Sequence Viewer

Length: 1002 bp
ATGATGACGATGATGAAACTATCTCTACTTTCTATATTGGTTTTCTCTCTGTCACATTTTCATGTGGTGCAATCTGACAATGCGCCGGCTCCTGCTCCTGCTCCCAAACTCGCAAACCCGCCTCCATCGCCGTCGCCGCCTCCTCCCGCGGCTTCTCCGGCACTTACTCCGACCGCTTCTCCTCCGGCATCCCCTCCGACTCACTCTCCTCCGCCTGCGGCTTCTCCAAAATCCTCTCCACCAACTTCGACTCCTCCGGCCGCCGCGCCGGCCTTCTCACCGGCAACTCCTCCTCCGGCGTCACCAGTTTCTCCGGCGTCTAGCCCGTCCGCAAATGGGTCGTCGCCGGTTCAAGCACCGGCCACGCCCCCGCCGACTGTGGCCTCTCCCGTTGCGACTCCGGTGAGCGCTCCGAAGTCAAGCCCATCTGGGGCTCCGCCGGTTGCTGAGACTCCCGAGACTGCGGCAACCCCATCTTCGTCGAGCATTCCTTCGTCTGAAACTCCGTCGGAGTCGCCGGCGATGTTCCCGTCGAGCAGTAGCCCACCAAGTCCGACGCCGGCGGGTCTGTCGCCTGAGGGCGCGGCGGCGAGTCCCGCTAGCGATGATACGTCGGGTTCGGAGTCCAAGTATGGAGTTGGGTTCATTTTGATGCAACTTGCAAAGCTTGGCTTGGCAGCTGTGCTTGCTTATGGGCTGTTTGATGTGGTTACGTACACCTCCTTTTTTGTGTTTGCATTTCTGGGGTATGAGAAAAGTACTGGAAAGAGTCCTGCTGCCAATATCAAGGCCCTTATAGGGATTGTTCTCCTGGTGTGGACAGGAAATAATGTTACAAGGCCATTTCGAGTAGCTGGAGCAGCTGCACTGGCACCTGTAATGGACAAAGGCTTAAAAAGGATCCAAAAACAGCGTCTGAAGGCAAAAGTATGGGACACCATCTGCGGCAATCTCTCCATCTTAATTTTACCTGGAAAATCCTTCTTTGTTTTCGTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

33.43

Weight (kDa)

9.58

Isoelectric Point (pI)

80.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 871
AccII CGCG 3 cut(s) 149, 266, 584
AclWI GGATC 2 cut(s) 895, 908
AcoI YGGCCR 2 cut(s) 258, 360
AcuI CTGAAG 1 cut(s) 938
AcyI GRCGYC 3 cut(s) 299, 317, 557
AfaI GTAC 2 cut(s) 716, 760
AfeI AGCGCT 1 cut(s) 409
AfiI CCNNNNNNNGG 3 cut(s) 336, 430, 798
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 2 cut(s) 810, 970
AluBI AGCT 4 cut(s) 667, 680, 854, 863
AluI AGCT 4 cut(s) 667, 680, 854, 863
Alw26I GTCTC 2 cut(s) 443, 452
AlwI GGATC 2 cut(s) 895, 908
AlwNI CAGNNNCTG 1 cut(s) 916
Ama87I CYCGRG 1 cut(s) 455
Aor51HI AGCGCT 1 cut(s) 409
AoxI GGCC 6 cut(s) 258, 270, 360, 381, 789, 839
ApeKI GCWGC 4 cut(s) 677, 776, 860, 863
ArsI GACNNNNNNTTYG 4 cut(s) 326, 358, 898, 930
AspLEI GCGC 4 cut(s) 85, 268, 410, 584
AspS9I GGNCC 1 cut(s) 790
AsuHPI GGTGA 3 cut(s) 270, 294, 415
AsuNHI GCTAGC 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 576
BamHI GGATCC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 436
BbvI GCAGC 4 cut(s) 689, 763, 850, 872
BccI CCATC 5 cut(s) 133, 433, 481, 947, 965
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BciT130I CCWGG 2 cut(s) 812, 972
BcoDI GTCTC 2 cut(s) 443, 452
BfaI CTAG 2 cut(s) 321, 600
BfoI RGCGCY 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 269
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 812, 972
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 4 cut(s) 90, 435, 873, 902
BmrFI CCNGG 2 cut(s) 812, 972
BmsI GCATC 2 cut(s) 197, 642
BmtI GCTAGC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 876
BsaAI YACGTR 1 cut(s) 714
BsaHI GRCGYC 3 cut(s) 299, 317, 557
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 3 cut(s) 336, 430, 798
Bse118I RCCGGY 8 cut(s) 85, 268, 280, 346, 358, 439, 517, 559
Bse1I ACTGG 3 cut(s) 305, 766, 873
Bse21I CCTNAGG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 812, 972
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 3 cut(s) 336, 430, 798
BseMII CTCAG 2 cut(s) 438, 567
BseNI ACTGG 3 cut(s) 305, 766, 873
BseRI GAGGAG 6 cut(s) 132, 171, 198, 243, 279, 282
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 689, 763, 850, 872
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 3 cut(s) 149, 266, 584
Bsh1285I CGRYCG 2 cut(s) 174, 261
BshFI GGCC 6 cut(s) 260, 272, 362, 383, 791, 841
BshNI GGYRCC 1 cut(s) 871
BsiEI CGRYCG 2 cut(s) 174, 261
BsiHKCI CYCGRG 1 cut(s) 455
BslFI GGGAC 2 cut(s) 579, 947
BslI CCNNNNNNNGG 3 cut(s) 336, 430, 798
BsmAI GTCTC 2 cut(s) 443, 452
BsmFI GGGAC 2 cut(s) 579, 947
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 6 cut(s) 260, 272, 362, 383, 791, 841
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 900
BspANI GGCC 6 cut(s) 260, 272, 362, 383, 791, 841
BspCNI CTCAG 2 cut(s) 439, 568
BspFNI CGCG 3 cut(s) 149, 266, 584
BspLI GGNNCC 4 cut(s) 90, 435, 873, 902
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 2 cut(s) 895, 908
BspT107I GGYRCC 1 cut(s) 871
BsrFI RCCGGY 8 cut(s) 85, 268, 280, 346, 358, 439, 517, 559
BsrI ACTGG 3 cut(s) 305, 766, 873
BssAI RCCGGY 8 cut(s) 85, 268, 280, 346, 358, 439, 517, 559
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 900
BssNI GRCGYC 3 cut(s) 299, 317, 557
Bst2UI CCWGG 2 cut(s) 812, 972
Bst4CI ACNGT 1 cut(s) 379
BstACI GRCGYC 3 cut(s) 299, 317, 557
BstBAI YACGTR 1 cut(s) 714
BstC8I GCNNGC 7 cut(s) 87, 216, 270, 519, 561, 601, 687
BstDEI CTNAG 2 cut(s) 447, 576
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 3 cut(s) 149, 266, 584
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 4 cut(s) 85, 268, 410, 584
BstKTI GATC 1 cut(s) 903
BstMAI GTCTC 2 cut(s) 443, 452
BstMBI GATC 1 cut(s) 900
BstMCI CGRYCG 2 cut(s) 174, 261
BstMWI GCNNNNNNNGC 8 cut(s) 127, 136, 158, 269, 596, 686, 860, 869
BstNI CCWGG 2 cut(s) 812, 972
BstSCI CCNGG 2 cut(s) 810, 970
BstSNI TACGTA 1 cut(s) 714
BstUI CGCG 3 cut(s) 149, 266, 584
BstV1I GCAGC 4 cut(s) 689, 763, 850, 872
BstX2I RGATCY 1 cut(s) 900
BstYI RGATCY 1 cut(s) 900
BstZI CGGCCG 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 6 cut(s) 260, 272, 362, 383, 791, 841
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 3 cut(s) 111, 536, 618
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 866
Cac8I GCNNGC 7 cut(s) 87, 216, 270, 519, 561, 601, 687
CaiI CAGNNNCTG 1 cut(s) 916
CfoI GCGC 4 cut(s) 85, 268, 410, 584
Cfr10I RCCGGY 8 cut(s) 85, 268, 280, 346, 358, 439, 517, 559
Cfr13I GGNCC 1 cut(s) 790
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 4 cut(s) 288, 306, 565, 902
Csp6I GTAC 2 cut(s) 715, 759
CviAII CATG 1 cut(s) 62
CviQI GTAC 2 cut(s) 715, 759
DdeI CTNAG 2 cut(s) 447, 576
DpnI GATC 1 cut(s) 902
DpnII GATC 1 cut(s) 900
EaeI YGGCCR 2 cut(s) 258, 360
EagI CGGCCG 1 cut(s) 258
EciI GGCGGA 2 cut(s) 201, 426
EclXI CGGCCG 1 cut(s) 258
Eco105I TACGTA 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 436
Eco47III AGCGCT 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 938
Eco81I CCTNAGG 1 cut(s) 576
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 810, 970
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 1 cut(s) 65
FaiI YATR 7 cut(s) 35, 63, 633, 693, 750, 797, 931
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FaqI GGGAC 2 cut(s) 579, 947
FatI CATG 1 cut(s) 61
FauI CCCGC 5 cut(s) 126, 154, 378, 556, 604
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 436
FspBI CTAG 2 cut(s) 321, 600
GlaI GCGC 4 cut(s) 84, 267, 409, 583
GsuI CTGGAG 1 cut(s) 876
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 6 cut(s) 260, 272, 362, 383, 791, 841
HgaI GACGC 4 cut(s) 288, 306, 565, 902
HhaI GCGC 4 cut(s) 85, 268, 410, 584
Hin1I GRCGYC 3 cut(s) 299, 317, 557
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 4 cut(s) 83, 266, 408, 582
HinP1I GCGC 4 cut(s) 83, 266, 408, 582
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 8 cut(s) 199, 250, 397, 451, 512, 592, 623, 769
HphI GGTGA 3 cut(s) 270, 294, 415
Hpy166II GTNNAC 2 cut(s) 717, 819
Hpy188I TCNGA 9 cut(s) 76, 171, 198, 414, 499, 511, 555, 622, 918
Hpy188III TCNNGA 2 cut(s) 455, 994
Hpy8I GTNNAC 2 cut(s) 717, 819
Hpy99I CGWCG 7 cut(s) 136, 346, 484, 511, 535, 559, 616
HpyAV CCTTC 4 cut(s) 283, 501, 913, 991
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 611, 713
HpyCH4V TGCA 5 cut(s) 70, 655, 662, 737, 866
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 136, 158, 269, 596, 686, 860, 869
HpyF3I CTNAG 2 cut(s) 447, 576
HpySE526I ACGT 2 cut(s) 611, 713
Hsp92I GRCGYC 3 cut(s) 299, 317, 557
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 4 cut(s) 83, 266, 408, 582
KroI GCCGGC 4 cut(s) 85, 268, 517, 559
KroNI GCCGGC 4 cut(s) 87, 270, 519, 561
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 900
LmnI GCTCC 6 cut(s) 94, 100, 106, 415, 439, 857
Lsp1109I GCAGC 4 cut(s) 689, 763, 850, 872
LweI GCATC 2 cut(s) 197, 642
MaeI CTAG 2 cut(s) 321, 600
MaeII ACGT 2 cut(s) 611, 713
MaeIII GTNAC 4 cut(s) 51, 300, 709, 832
MalI GATC 1 cut(s) 902
MboI GATC 1 cut(s) 900
MboII GAAGA 1 cut(s) 468
MflI RGATCY 1 cut(s) 900
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 1 cut(s) 963
MlyI GAGTC 8 cut(s) 193, 244, 391, 445, 521, 601, 632, 778
MmeI TCCRAC 4 cut(s) 194, 221, 489, 578
MreI CGCCGGCG 2 cut(s) 517, 559
MroNI GCCGGC 4 cut(s) 85, 268, 517, 559
MseI TTAA 2 cut(s) 893, 962
MslI CAYNNNNRTG 2 cut(s) 60, 650
MspA1I CMGCKG 3 cut(s) 149, 680, 863
MspR9I CCNGG 2 cut(s) 812, 972
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 812, 972
MvnI CGCG 3 cut(s) 149, 266, 584
MwoI GCNNNNNNNGC 8 cut(s) 127, 136, 158, 269, 596, 686, 860, 869
NaeI GCCGGC 4 cut(s) 87, 270, 519, 561
NdeII GATC 1 cut(s) 900
NgoMIV GCCGGC 4 cut(s) 85, 268, 517, 559
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 4 cut(s) 90, 435, 873, 902
NmuCI GTSAC 2 cut(s) 51, 300
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 4 cut(s) 87, 270, 519, 561
PleI GAGTC 8 cut(s) 193, 244, 391, 445, 520, 600, 631, 777
PpsI GAGTC 8 cut(s) 193, 244, 391, 445, 520, 600, 631, 777
Ppu21I YACGTR 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 810, 970
PspGI CCWGG 2 cut(s) 810, 970
PspN4I GGNNCC 4 cut(s) 90, 435, 873, 902
PspPI GGNCC 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 916
PsuI RGATCY 1 cut(s) 900
PvuII CAGCTG 2 cut(s) 680, 863
RsaI GTAC 2 cut(s) 716, 760
RsaNI GTAC 2 cut(s) 715, 759
RseI CAYNNNNRTG 2 cut(s) 60, 650
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 893, 962
Sau3AI GATC 1 cut(s) 900
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 8 cut(s) 193, 244, 391, 445, 521, 601, 632, 778
ScrFI CCNGG 2 cut(s) 812, 972
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 2 cut(s) 197, 642
Sfr303I CCGCGG 1 cut(s) 150
SgrAI CRCCGGYG 2 cut(s) 517, 559
SgrBI CCGCGG 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 60, 650
SnaBI TACGTA 1 cut(s) 714
Sse9I AATT 1 cut(s) 963
SspMI CTAG 2 cut(s) 321, 600
StyD4I CCNGG 2 cut(s) 810, 970
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 614, 716
TaqI TCGA 4 cut(s) 248, 482, 533, 847
TasI AATT 1 cut(s) 963
TatI WGTACW 1 cut(s) 758
TauI GCSGC 9 cut(s) 139, 152, 221, 263, 266, 467, 587, 590, 948
Tru1I TTAA 2 cut(s) 893, 962
Tru9I TTAA 2 cut(s) 893, 962
TscAI CASTG 1 cut(s) 873
TseFI GTSAC 2 cut(s) 51, 300
TseI GCWGC 4 cut(s) 677, 776, 860, 863
Tsp45I GTSAC 2 cut(s) 51, 300
TspDTI ATGAA 3 cut(s) 29, 50, 634
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 1 cut(s) 873
XspI CTAG 2 cut(s) 321, 600
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.