Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

14783657 .. 14784602

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCGTACCAAGTAACGGCTACTTTACCGATTATAGCCAGTGGCACCCCATCCCACCTTTCCCCAACGGTCACATTTTCTGATTTCATTCACAACAACAACATTAATCTGAGGTATCATTTGGAGATTCCAAAGATGCATAAACTTGTTGTAGTACTCTCTGTTCTTCTCCTGTGCGTCGTCCCGCATTTCAATGTGGTACAAGCAGGCAATGCGCCTGCTCCTTCCCCAAAACCCACCAACACCCCCACAAAGCCGCCGCCTCCGCAACCCTCTCCTGCTTCTTCTCCGATCACTTCTCCTGCAAAGCCTCCCGCATCCCCTCCGAGCCCTCCGACTCAGTCGCCGCCTTCGCCTTCTCCCAAGACCTCTCCGCCAACTTCCCCGCCGACCCCAACTCCTTCGGCGGCGACCCCACCCACATCGGTTTCTCCGGCGAAGAGCCCGTCCAAGAGTGTGTCTCCACCGGCTCAATCACCGGCGCCCCCTACGCCCACCGTTGCCTCTCCGGCCAAAACTCCGGTGAGCGCTCCTAAGAAAAGTCCGGTCGGTGCTTCGCCAGTTGCAGAGGGTCCTGAGATTGCAGAGACCCCATCGTTACCAGTGGGCATTCCTTCGAGTTCTGCAACACCGGCAGGATCCCCGGGAATTTTCCCTTCAAGGGGTAGCCCACCGATTCCGACGCCGGCAAGTCTGTCACCGGATAGTGCTGCCCAGGGTCCATCAAGCGATGAATCGTCTGCTTCTGGTTTGAAGGCGGTTCGGGTTGTTTTGAGCGGGCTGTCTGTCTGGGTTGCTTTGGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

26.81

Weight (kDa)

9.76

Isoelectric Point (pI)

94.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	44, 481
AccBSI	CCGCTC	1 cut(s)	777
AclWI	GGATC	2 cut(s)	633, 646
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	648
AcyI	GRCGYC	2 cut(s)	482, 683
AfaI	GTAC	3 cut(s)	8, 156, 201
AfeI	AGCGCT	1 cut(s)	529
AfiI	CCNNNNNNNGG	3 cut(s)	16, 661, 662
AgsI	TTSAA	3 cut(s)	193, 660, 754
AjnI	CCWGG	1 cut(s)	714
Alw26I	GTCTC	2 cut(s)	465, 581
AlwI	GGATC	2 cut(s)	633, 646
Ama87I	CYCGRG	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	648
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AseI	ATTAAT	1 cut(s)	105
AspLEI	GCGC	3 cut(s)	217, 484, 530
AspS9I	GGNCC	2 cut(s)	572, 719
AsuC2I	CCSGG	2 cut(s)	644, 645
AsuHPI	GGTGA	3 cut(s)	468, 535, 690
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	572, 719
BamHI	GGATCC	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	44, 481
BanII	GRGCYC	2 cut(s)	332, 446
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	3 cut(s)	58, 601, 730
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	716
BcnI	CCSGG	2 cut(s)	644, 645
BcoDI	GTCTC	2 cut(s)	465, 581
BfoI	RGCGCY	2 cut(s)	485, 531
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	5 cut(s)	257, 260, 347, 408, 711
BlsI	GCNGC	5 cut(s)	258, 261, 348, 409, 712
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	644, 645, 716
Bme18I	GGWCC	2 cut(s)	572, 719
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	572, 719
BmiI	GGNNCC	5 cut(s)	46, 483, 573, 640, 720
BmrFI	CCNGG	3 cut(s)	644, 645, 716
BmsI	GCATC	2 cut(s)	126, 326
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpuMI	CCSGG	2 cut(s)	644, 645
BsaHI	GRCGYC	2 cut(s)	482, 683
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	4 cut(s)	642, 643, 714, 715
BsaWI	WCCGGW	3 cut(s)	520, 544, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 661, 662
Bse118I	RCCGGY	4 cut(s)	466, 478, 631, 685
Bse1I	ACTGG	3 cut(s)	39, 560, 602
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	4 cut(s)	642, 643, 714, 715
BseGI	GGATG	2 cut(s)	50, 317
BseLI	CCNNNNNNNGG	3 cut(s)	16, 661, 662
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	3 cut(s)	101, 353, 567
BseNI	ACTGG	3 cut(s)	39, 560, 602
BseXI	GCAGC	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	2 cut(s)	44, 481
BsiEI	CGRYCG	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	16, 661, 662
BsmAI	GTCTC	2 cut(s)	465, 581
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	512
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	2 cut(s)	332, 446
Bsp143I	GATC	2 cut(s)	291, 638
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	3 cut(s)	102, 352, 568
BspLI	GGNNCC	5 cut(s)	46, 483, 573, 640, 720
BspPI	GGATC	2 cut(s)	633, 646
BspQI	GCTCTTC	1 cut(s)	434
BspT107I	GGYRCC	2 cut(s)	44, 481
BspTNI	GGTCTC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	777
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	4 cut(s)	466, 478, 631, 685
BsrI	ACTGG	3 cut(s)	39, 560, 602
BssAI	RCCGGY	4 cut(s)	466, 478, 631, 685
BssECI	CCNNGG	4 cut(s)	642, 643, 714, 715
BssMI	GATC	2 cut(s)	291, 638
BssNI	GRCGYC	2 cut(s)	482, 683
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	70, 499
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	2 cut(s)	482, 683
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	208, 219, 687, 779
BstDEI	CTNAG	4 cut(s)	110, 339, 534, 576
BstF5I	GGATG	2 cut(s)	50, 317
BstH2I	RGCGCY	2 cut(s)	485, 531
BstHHI	GCGC	3 cut(s)	217, 484, 530
BstKTI	GATC	2 cut(s)	294, 641
BstMAI	GTCTC	2 cut(s)	465, 581
BstMBI	GATC	2 cut(s)	291, 638
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 265, 352, 490, 509, 632
BstNI	CCWGG	1 cut(s)	716
BstSCI	CCNGG	3 cut(s)	642, 643, 714
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	1 cut(s)	512
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	50, 317
BtsIMutI	CAGTG	2 cut(s)	46, 609
Cac8I	GCNNGC	4 cut(s)	208, 219, 687, 779
CfoI	GCGC	3 cut(s)	217, 484, 530
Cfr10I	RCCGGY	4 cut(s)	466, 478, 631, 685
Cfr13I	GGNCC	2 cut(s)	572, 719
Cfr9I	CCCGGG	1 cut(s)	643
CseI	GACGC	2 cut(s)	166, 691
Csp6I	GTAC	3 cut(s)	7, 155, 200
CviQI	GTAC	3 cut(s)	7, 155, 200
DdeI	CTNAG	4 cut(s)	110, 339, 534, 576
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	2 cut(s)	293, 640
DpnII	GATC	2 cut(s)	291, 638
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	332, 446
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	572, 719
Eco47III	AGCGCT	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	332, 446
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
FaiI	YATR	2 cut(s)	35, 141
FaqI	GGGAC	1 cut(s)	167
FauI	CCCGC	4 cut(s)	192, 322, 393, 770
Fnu4HI	GCNGC	5 cut(s)	257, 260, 347, 408, 711
FokI	GGATG	2 cut(s)	37, 304
FriOI	GRGCYC	2 cut(s)	332, 446
Fsp4HI	GCNGC	5 cut(s)	257, 260, 347, 408, 711
GlaI	GCGC	3 cut(s)	216, 483, 529
GluI	GCNGC	5 cut(s)	257, 260, 347, 408, 711
HaeII	RGCGCY	2 cut(s)	485, 531
HaeIII	GGCC	1 cut(s)	512
HgaI	GACGC	2 cut(s)	166, 691
HhaI	GCGC	3 cut(s)	217, 484, 530
Hin1I	GRCGYC	2 cut(s)	482, 683
Hin6I	GCGC	3 cut(s)	215, 482, 528
HinP1I	GCGC	3 cut(s)	215, 482, 528
HinfI	GANTC	4 cut(s)	127, 337, 676, 734
HphI	GGTGA	3 cut(s)	468, 535, 690
Hpy188I	TCNGA	6 cut(s)	82, 111, 291, 327, 336, 681
Hpy188III	TCNNGA	1 cut(s)	575
Hpy99I	CGWCG	2 cut(s)	182, 685
HpyAV	CCTTC	7 cut(s)	234, 360, 366, 411, 624, 666, 748
HpyCH4III	ACNGT	2 cut(s)	70, 499
HpyCH4V	TGCA	5 cut(s)	139, 305, 566, 584, 626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 265, 352, 490, 509, 632
HpyF3I	CTNAG	4 cut(s)	110, 339, 534, 576
Hsp92I	GRCGYC	2 cut(s)	482, 683
HspAI	GCGC	3 cut(s)	215, 482, 528
KasI	GGCGCC	1 cut(s)	481
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	291, 638
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	2 cut(s)	226, 535
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	2 cut(s)	126, 326
MaeIII	GTNAC	4 cut(s)	13, 70, 597, 696
MalI	GATC	2 cut(s)	293, 640
MbiI	CCGCTC	1 cut(s)	777
MboI	GATC	2 cut(s)	291, 638
MboII	GAAGA	3 cut(s)	158, 276, 451
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	332, 446
MluCI	AATT	1 cut(s)	648
Mly113I	GGCGCC	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	359, 704
MnlI	CCTC	9 cut(s)	105, 273, 283, 321, 333, 342, 379, 514, 562
Mph1103I	ATGCAT	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	685
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	3 cut(s)	644, 645, 716
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	6 cut(s)	212, 265, 352, 490, 509, 632
NaeI	GCCGGC	1 cut(s)	687
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	2 cut(s)	644, 645
NdeII	GATC	2 cut(s)	291, 638
NgoMIV	GCCGGC	1 cut(s)	685
NlaIV	GGNNCC	5 cut(s)	46, 483, 573, 640, 720
NmuCI	GTSAC	2 cut(s)	70, 696
NsiI	ATGCAT	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	434
PctI	GAATGC	1 cut(s)	609
PdiI	GCCGGC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	127, 676, 734
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	258, 261, 348, 409, 712
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	5 cut(s)	46, 483, 573, 640, 720
PspPI	GGNCC	2 cut(s)	572, 719
PspPPI	RGGWCCY	1 cut(s)	572
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PsuI	RGATCY	1 cut(s)	638
PsyI	GACNNNGTC	1 cut(s)	340
RsaI	GTAC	3 cut(s)	8, 156, 201
RsaNI	GTAC	3 cut(s)	7, 155, 200
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	5 cut(s)	257, 260, 347, 408, 711
Sau3AI	GATC	2 cut(s)	291, 638
Sau96I	GGNCC	2 cut(s)	572, 719
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	3 cut(s)	644, 645, 716
SduI	GDGCHC	2 cut(s)	332, 446
SetI	ASST	3 cut(s)	60, 116, 371
SfaNI	GCATC	2 cut(s)	126, 326
SfoI	GGCGCC	1 cut(s)	483
SgrAI	CRCCGGYG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	572, 719
SmaI	CCCGGG	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	1 cut(s)	648
SspDI	GGCGCC	1 cut(s)	481
StyD4I	CCNGG	3 cut(s)	642, 643, 714
TaaI	ACNGT	2 cut(s)	70, 499
TaqI	TCGA	1 cut(s)	617
TasI	AATT	1 cut(s)	648
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	4 cut(s)	259, 262, 349, 410
TfiI	GAWTC	3 cut(s)	127, 676, 734
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	46, 609
TseFI	GTSAC	2 cut(s)	70, 696
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	2 cut(s)	70, 696
TspDTI	ATGAA	2 cut(s)	76, 747
TspMI	CCCGGG	1 cut(s)	643
TspRI	CASTG	2 cut(s)	46, 609
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	572, 719
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	1 cut(s)	648
XmaI	CCCGGG	1 cut(s)	643
ZrmI	AGTACT	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.