Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

51171950 .. 51190989

Gene Structure 19040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG388900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTGAATGCAGGTTCCTTCTCCCTTCAAGGACGGGGCCTCGGCCTCCATGAAAGCAAAATCTTCTGTGAAAGTGTTGGCCGGCTAAAGTTTCAAGATACCTCGCAGGGATTCGACGCCCTTAGAGAAATCTTAAGCAAATTGCAGGGCAAGGTGGAAAAGGGGGAGGGTTCCAAGTCTGAGGGGGCTGAGTTGAAGACATTGAAGGAGGAGGTGGGTAGGGGTGGGGGATCCAAGGCGGAGGGGGCTGAGTTGAGGACATTGAAGGAGGAGGGGGGTGAGGCTAAGGGGGCTGAGGGCGGGGGTGAGGCTGAGGGGATGGGGGCTGAGGGGGGTGGAATCAAGTGTTCCCTCAGTGAAGGAGCAGCAGCAGACAACTTCCCTTCAAACGATTATGAACAATTGGAGGTGAATTCGGCTGAAATGAGTGCAAAACTTGCAAAGCTTGGCTTGGCAGCTGTGCTTGCTTATGGGCTGTTTGATGCGGTTACGTACACCTCCTTTTTTGTGTTTGCATTTCTGGGGTATGAGAAAAGTACCGGAAAGAATCCTGCTGCCAATATCAAGGCCCTTATAGGGATTGTTCACCTGATGTGGACGGGAAATAATGTTACGAGGCCATTTCAAGTAGCTGGAGCAGCTACACTGGCACCTGTAATGGACAAAGGCTTAAAAAGGATCCAAAAACAGTTTAAATTTCCTAGTTGGTTTATGCATTTGTGCTGCTTGTCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

25.91

Weight (kDa)

6.36

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	1 cut(s)	649
AciI	CCGC	3 cut(s)	239, 300, 485
AclWI	GGATC	4 cut(s)	225, 238, 673, 686
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	412, 695
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	494, 538
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	8 cut(s)	7, 29, 95, 196, 205, 265, 387, 626
AluBI	AGCT	4 cut(s)	445, 458, 632, 641
AluI	AGCT	4 cut(s)	445, 458, 632, 641
AlwI	GGATC	4 cut(s)	225, 238, 673, 686
AoxI	GGCC	5 cut(s)	37, 43, 79, 567, 617
ApeKI	GCWGC	6 cut(s)	365, 368, 455, 554, 638, 723
ApoI	RAATTY	2 cut(s)	412, 695
AspS9I	GGNCC	2 cut(s)	37, 568
AsuHPI	GGTGA	4 cut(s)	290, 317, 421, 578
BamHI	GGATCC	2 cut(s)	230, 678
BanI	GGYRCC	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	203
BbvCI	CCTCAGC	3 cut(s)	294, 312, 327
BbvI	GCAGC	6 cut(s)	377, 380, 467, 541, 650, 710
BccI	CCATC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	734
BfrI	CTTAAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	6 cut(s)	366, 369, 456, 555, 639, 724
BlsI	GCNGC	6 cut(s)	367, 370, 457, 556, 640, 725
BmgT120I	GGNCC	2 cut(s)	37, 568
BmiI	GGNNCC	6 cut(s)	16, 38, 172, 232, 651, 680
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	4 cut(s)	285, 294, 312, 327
BsaAI	YACGTR	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	40, 234
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	40, 234
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	7 cut(s)	171, 180, 240, 285, 303, 318, 367
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	2 cut(s)	224, 284
BseXI	GCAGC	6 cut(s)	377, 380, 467, 541, 650, 710
BshFI	GGCC	5 cut(s)	39, 45, 81, 569, 619
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	82, 540
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	5 cut(s)	39, 45, 81, 569, 619
Bsp143I	GATC	2 cut(s)	230, 678
BspACI	CCGC	3 cut(s)	239, 300, 485
BspANI	GGCC	5 cut(s)	39, 45, 81, 569, 619
BspCNI	CTCAG	7 cut(s)	172, 181, 241, 286, 304, 319, 366
BspLI	GGNNCC	6 cut(s)	16, 38, 172, 232, 651, 680
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	4 cut(s)	225, 238, 673, 686
BspT107I	GGYRCC	1 cut(s)	649
BspTI	CTTAAG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	651
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	40, 234
BssMI	GATC	2 cut(s)	230, 678
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	83, 465
BstDEI	CTNAG	9 cut(s)	122, 180, 189, 249, 285, 294, 312, 327, 353
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	233, 681
BstMBI	GATC	2 cut(s)	230, 678
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 290, 437, 464, 638, 647
BstSFI	CTRYAG	1 cut(s)	734
BstSNI	TACGTA	1 cut(s)	492
BstV1I	GCAGC	6 cut(s)	377, 380, 467, 541, 650, 710
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	230, 678
BstYI	RGATCY	2 cut(s)	230, 678
BsuRI	GGCC	5 cut(s)	39, 45, 81, 569, 619
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	361, 644
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	83, 465
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	37, 568
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	493, 537
CviAII	CATG	1 cut(s)	50
CviQI	GTAC	2 cut(s)	493, 537
DdeI	CTNAG	9 cut(s)	122, 180, 189, 249, 285, 294, 312, 327, 353
DpnI	GATC	2 cut(s)	232, 680
DpnII	GATC	2 cut(s)	230, 678
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	254
Eco105I	TACGTA	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	37, 568
EcoRI	GAATTC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	53
FaiI	YATR	7 cut(s)	51, 396, 471, 528, 575, 713, 736
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	1 cut(s)	49
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	6 cut(s)	366, 369, 456, 555, 639, 724
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	6 cut(s)	366, 369, 456, 555, 639, 724
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	6 cut(s)	366, 369, 456, 555, 639, 724
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	39, 45, 81, 569, 619
HapII	CCGG	2 cut(s)	82, 540
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	111, 339, 547
HpaII	CCGG	2 cut(s)	82, 540
HphI	GGTGA	4 cut(s)	290, 317, 421, 578
Hpy166II	GTNNAC	3 cut(s)	495, 586, 597
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	3 cut(s)	495, 586, 597
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	6 cut(s)	28, 35, 199, 259, 353, 393
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	6 cut(s)	11, 145, 431, 440, 515, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 290, 437, 464, 638, 647
HpyF3I	CTNAG	9 cut(s)	122, 180, 189, 249, 285, 294, 312, 327, 353
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	230, 678
LmnI	GCTCC	2 cut(s)	362, 635
Lsp1109I	GCAGC	6 cut(s)	377, 380, 467, 541, 650, 710
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	487, 610
MalI	GATC	2 cut(s)	232, 680
MboI	GATC	2 cut(s)	230, 678
MboII	GAAGA	2 cut(s)	55, 208
MfeI	CAATTG	1 cut(s)	401
MflI	RGATCY	2 cut(s)	230, 678
MluCI	AATT	4 cut(s)	140, 401, 412, 695
Mph1103I	ATGCAT	1 cut(s)	717
MroNI	GCCGGC	1 cut(s)	81
MseI	TTAA	3 cut(s)	134, 671, 693
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	133
MspI	CCGG	2 cut(s)	82, 540
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	6 cut(s)	245, 290, 437, 464, 638, 647
NaeI	GCCGGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	230, 678
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	6 cut(s)	16, 38, 172, 232, 651, 680
NmeAIII	GCCGAG	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	717
PctI	GAATGC	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	111, 339, 547
PkrI	GCNGC	6 cut(s)	367, 370, 457, 556, 640, 725
Ppu21I	YACGTR	1 cut(s)	492
PspN4I	GGNNCC	6 cut(s)	16, 38, 172, 232, 651, 680
PspPI	GGNCC	2 cut(s)	37, 568
PsuI	RGATCY	2 cut(s)	230, 678
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	494, 538
RsaNI	GTAC	2 cut(s)	493, 537
SaqAI	TTAA	3 cut(s)	134, 671, 693
SatI	GCNGC	6 cut(s)	366, 369, 456, 555, 639, 724
Sau3AI	GATC	2 cut(s)	230, 678
Sau96I	GGNCC	2 cut(s)	37, 568
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SnaBI	TACGTA	1 cut(s)	492
Sse9I	AATT	4 cut(s)	140, 401, 412, 695
SsiI	CCGC	3 cut(s)	239, 300, 485
SspMI	CTAG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	140, 401, 412, 695
TfiI	GAWTC	3 cut(s)	111, 339, 547
Tru1I	TTAA	3 cut(s)	134, 671, 693
Tru9I	TTAA	3 cut(s)	134, 671, 693
TscAI	CASTG	2 cut(s)	361, 651
TseI	GCWGC	6 cut(s)	365, 368, 455, 554, 638, 723
TspDTI	ATGAA	2 cut(s)	66, 411
TspRI	CASTG	2 cut(s)	361, 651
Vha464I	CTTAAG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	412, 695
XspI	CTAG	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.