Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003246.1

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

15960 .. 16631

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003246.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgatgatgaaactatctctacttgctatattggttttctctctgctacatttccatgtggtgcgatcagacaatgcgccggctcctgctcctgctcccaaactcgcaaacctgcctcccccgcctcctcccgccgcttctccggcacttactccgaccgcttctcctccggcatcccctccgactcactctcctccgcctgcggcttctccaaaatcctctccaccaacttcgactcctccggccgccgcgccgacagtctcgccggcaactcctcctccggcgtcacccctttctccagcggctagcccgtcctcaaatgggtcgtcgccggttcaagccccggccacgcagccgccgactgtggcctctcccgttgcgactccggtgagcgctccgaagtcaagcccatctggggctccgccggttgcagagactcccgagactgcggcaaccccatcctcgtcgagcattccttcgtctgcaaccccgtcggagtcgccggcgatgttcccgtcgagcagtagcccaccaagtccgacgccggcgggtctgtcgcctgagggcgcggcggcgagtcccgctagtgatgatacgtcgggttcggagcccaagtatggagttgggttcattttgagtgggctctctatctgggtcgctttggctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

21.47

Weight (kDa)

5.81

Isoelectric Point (pI)

104.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccII	CGCG	2 cut(s)	251, 569
AcoI	YGGCCR	2 cut(s)	243, 345
AcyI	GRCGYC	2 cut(s)	284, 542
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	321, 415, 617
AgsI	TTSAA	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	265, 428, 437
Ama87I	CYCGRG	1 cut(s)	440
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	3 cut(s)	243, 345, 366
ApeKI	GCWGC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	4 cut(s)	79, 253, 395, 569
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	279, 400
AsuNHI	GCTAGC	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	561
BanII	GRGCYC	3 cut(s)	421, 612, 645
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	418, 466
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	265, 428, 437
BfaI	CTAG	2 cut(s)	306, 585
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	84, 420, 609
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	182
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	284, 542
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 415, 617
Bse118I	RCCGGY	6 cut(s)	79, 265, 331, 424, 502, 544
Bse21I	CCTNAGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	173, 458
BseLI	CCNNNNNNNGG	3 cut(s)	321, 415, 617
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	6 cut(s)	117, 156, 183, 228, 264, 267
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	2 cut(s)	251, 569
Bsh1285I	CGRYCG	2 cut(s)	159, 246
BshFI	GGCC	3 cut(s)	245, 347, 368
BsiEI	CGRYCG	2 cut(s)	159, 246
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	3 cut(s)	321, 415, 617
BsmAI	GTCTC	3 cut(s)	265, 428, 437
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	245, 347, 368
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	421, 612, 645
Bsp143I	GATC	1 cut(s)	65
BspANI	GGCC	3 cut(s)	245, 347, 368
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	2 cut(s)	251, 569
BspLI	GGNNCC	3 cut(s)	84, 420, 609
BspMI	ACCTGC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	309
BsrFI	RCCGGY	6 cut(s)	79, 265, 331, 424, 502, 544
BssAI	RCCGGY	6 cut(s)	79, 265, 331, 424, 502, 544
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	65
BssNI	GRCGYC	2 cut(s)	284, 542
Bst4CI	ACNGT	2 cut(s)	259, 364
BstACI	GRCGYC	2 cut(s)	284, 542
BstC8I	GCNNGC	6 cut(s)	81, 201, 267, 307, 504, 546
BstDEI	CTNAG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	173, 458
BstFNI	CGCG	2 cut(s)	251, 569
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	4 cut(s)	79, 253, 395, 569
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	265, 428, 437
BstMBI	GATC	1 cut(s)	65
BstMCI	CGRYCG	2 cut(s)	159, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 143, 581
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	2 cut(s)	251, 569
BstV1I	GCAGC	1 cut(s)	364
BstZI	CGGCCG	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	245, 347, 368
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	2 cut(s)	173, 458
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	6 cut(s)	81, 201, 267, 307, 504, 546
CfoI	GCGC	4 cut(s)	79, 253, 395, 569
Cfr10I	RCCGGY	6 cut(s)	79, 265, 331, 424, 502, 544
CseI	GACGC	2 cut(s)	273, 550
CviAII	CATG	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	2 cut(s)	243, 345
EagI	CGGCCG	1 cut(s)	243
EciI	GGCGGA	2 cut(s)	186, 411
EclXI	CGGCCG	1 cut(s)	243
Eco24I	GRGCYC	3 cut(s)	421, 612, 645
Eco47III	AGCGCT	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	440
EcoT38I	GRGCYC	3 cut(s)	421, 612, 645
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	29, 57, 618
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	1 cut(s)	55
FauI	CCCGC	4 cut(s)	129, 139, 541, 589
FokI	GGATG	2 cut(s)	160, 445
FriOI	GRGCYC	3 cut(s)	421, 612, 645
FspBI	CTAG	2 cut(s)	306, 585
GlaI	GCGC	4 cut(s)	78, 252, 394, 568
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	245, 347, 368
HgaI	GACGC	2 cut(s)	273, 550
HhaI	GCGC	4 cut(s)	79, 253, 395, 569
Hin1I	GRCGYC	2 cut(s)	284, 542
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	4 cut(s)	77, 251, 393, 567
HinP1I	GCGC	4 cut(s)	77, 251, 393, 567
HinfI	GANTC	6 cut(s)	184, 235, 382, 436, 497, 577
HphI	GGTGA	2 cut(s)	279, 400
Hpy188I	TCNGA	7 cut(s)	70, 156, 183, 399, 496, 540, 607
Hpy188III	TCNNGA	1 cut(s)	440
Hpy99I	CGWCG	6 cut(s)	331, 469, 496, 520, 544, 601
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	259, 364
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	2 cut(s)	431, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 143, 581
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	596
Hsp92I	GRCGYC	2 cut(s)	284, 542
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	4 cut(s)	77, 251, 393, 567
KroI	GCCGGC	4 cut(s)	79, 265, 502, 544
KroNI	GCCGGC	4 cut(s)	81, 267, 504, 546
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	6 cut(s)	88, 94, 100, 400, 424, 607
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	306, 585
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	421, 612, 645
MlyI	GAGTC	6 cut(s)	178, 229, 376, 430, 506, 586
MmeI	TCCRAC	4 cut(s)	179, 206, 474, 563
MreI	CGCCGGCG	2 cut(s)	502, 544
MroNI	GCCGGC	4 cut(s)	79, 265, 502, 544
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	471
MvnI	CGCG	2 cut(s)	251, 569
MwoI	GCNNNNNNNGC	3 cut(s)	121, 143, 581
NaeI	GCCGGC	4 cut(s)	81, 267, 504, 546
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	1 cut(s)	65
NgoMIV	GCCGGC	4 cut(s)	79, 265, 502, 544
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	3 cut(s)	84, 420, 609
NmuCI	GTSAC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	1 cut(s)	471
PdiI	GCCGGC	4 cut(s)	81, 267, 504, 546
PleI	GAGTC	6 cut(s)	178, 229, 376, 430, 505, 585
PpsI	GAGTC	6 cut(s)	178, 229, 376, 430, 505, 585
PspN4I	GGNNCC	3 cut(s)	84, 420, 609
RseI	CAYNNNNRTG	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	65
SchI	GAGTC	6 cut(s)	178, 229, 376, 430, 506, 586
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	3 cut(s)	421, 612, 645
SetI	ASST	2 cut(s)	114, 599
SfaNI	GCATC	1 cut(s)	182
SgrAI	CRCCGGYG	2 cut(s)	502, 544
SmiMI	CAYNNNNRTG	1 cut(s)	54
SspMI	CTAG	2 cut(s)	306, 585
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	259, 364
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	3 cut(s)	233, 467, 518
TauI	GCSGC	9 cut(s)	137, 206, 248, 251, 305, 358, 452, 572, 575
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	23, 619
XspI	CTAG	2 cut(s)	306, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.