Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011546

Physical Location & Seq

Genomic Coordinates Reverse (-)

56679447 .. 56680682

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGATGATGAAACTATCTCTACTTTCTATAATGGTTTTCTCGCTGTCACATTTCCATGTGGTGCAATCAGACAATGCGCCGGCTCCTGCTCCTGCTCCTAAACTCGCAAACCCGCCTCCGCCCTCGTCGCCGCCTCCTCCCGCGGCTTCTCCGGCACTTACTCCGACCGCTTCTCCTCCGGCATCCCCTCCGACTCACTCTCCTCCGCCTGCGGCTTCTCCAAAATCCTCTCCACCAACTTCGACTCCTCCGGCCTCCGCGCCGACCGTCTCACCGGCAACTCCTCCTCCGGCGTCACCCGTTTCTCCGGCGGCTAGCCCGTCCGCAAATGGGTCGTCGCCGGTTCAAGCACCGGCTACGCCCCCGCCGACTGTGGCCTCTCCCGTTGCGACTCCGGTGAGCGCTCCGAAGTCAAGCCCATCTGGGGCTCCGCCGGTTGCAGAGACTCCCGAGACTGCGGCAACCCCATCTTCGTCGAGCATTCCTTCGTCTGAAACCCCGTCGGAGTCGCCGGCGATGTTCCCGTCGAGCAGTAGCCCACCAAGTCCGACGCCGGCGGGTCTGTCGCCTGAGGGCGCGGCGGCGAGTCCCGCTAGTGATGATACGTCGGGTTCGGAGCCCAACTTGCCTGCTTGGGCACGTCAGCATAATATGGACCGCTGGATATCAAATCTGAAATCTAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

22.45

Weight (kDa)

5.7

Isoelectric Point (pI)

109.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29330
malus_domestica	MD11G1200000.v1.1
prunus_persica	Prupe.4G243100_v2.0.a1 Prupe.4G243200_v2.0.a1
pyrus_communis	pycom03g13680
rosa_chinensis	RchiOBHm_Chr5g0053681
rosa_laevigata	RLG00000034893 RLG00000034895
rosa_multiflora	Rmu_sc0003246.1_g000003 Rmu_sc0026672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026890
rosa_rugosa	Rorug02G0290800 Rorug05G0281000 Rorug05G0281100
rosa_samantha	Rh5AG352500 Rh5BG364200 Rh5CG388900 Rh5DG378800 Rh5DG378900
rosa_wichuraiana	Rw5G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	146, 263, 581
AcyI	GRCGYC	2 cut(s)	296, 554
AfeI	AGCGCT	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	333, 427
AgsI	TTSAA	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	644
Alw26I	GTCTC	3 cut(s)	277, 440, 449
Ama87I	CYCGRG	1 cut(s)	452
Aor51HI	AGCGCT	1 cut(s)	406
AoxI	GGCC	2 cut(s)	255, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	4 cut(s)	82, 265, 407, 581
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	267, 291, 412
AsuNHI	GCTAGC	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	658
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	433, 624
BccI	CCATC	2 cut(s)	430, 478
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcoDI	GTCTC	3 cut(s)	277, 440, 449
BfaI	CTAG	2 cut(s)	318, 597
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	7 cut(s)	134, 147, 216, 315, 462, 582, 585
BlsI	GCNGC	7 cut(s)	135, 148, 217, 316, 463, 583, 586
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	3 cut(s)	87, 432, 621
BmsI	GCATC	1 cut(s)	194
BmtI	GCTAGC	1 cut(s)	321
BsaHI	GRCGYC	2 cut(s)	296, 554
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	8 cut(s)	160, 187, 190, 217, 232, 262, 274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 427
Bse118I	RCCGGY	7 cut(s)	82, 277, 343, 355, 436, 514, 556
Bse21I	CCTNAGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	333, 427
BseMII	CTCAG	1 cut(s)	564
BseRI	GAGGAG	6 cut(s)	129, 168, 195, 240, 276, 279
BseSI	GKGCMC	1 cut(s)	643
Bsh1236I	CGCG	3 cut(s)	146, 263, 581
Bsh1285I	CGRYCG	2 cut(s)	171, 270
BshFI	GGCC	2 cut(s)	257, 380
BsiEI	CGRYCG	2 cut(s)	171, 270
BsiHKCI	CYCGRG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	333, 427
BsmAI	GTCTC	3 cut(s)	277, 440, 449
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	257, 380
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	433, 624, 643
BspANI	GGCC	2 cut(s)	257, 380
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	3 cut(s)	146, 263, 581
BspLI	GGNNCC	3 cut(s)	87, 432, 621
BspOI	GCTAGC	1 cut(s)	321
BsrFI	RCCGGY	7 cut(s)	82, 277, 343, 355, 436, 514, 556
BssAI	RCCGGY	7 cut(s)	82, 277, 343, 355, 436, 514, 556
BssECI	CCNNGG	1 cut(s)	144
BssNI	GRCGYC	2 cut(s)	296, 554
Bst4CI	ACNGT	2 cut(s)	271, 376
BstACI	GRCGYC	2 cut(s)	296, 554
BstC8I	GCNNGC	6 cut(s)	84, 213, 319, 516, 558, 633
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	3 cut(s)	146, 263, 581
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	4 cut(s)	82, 265, 407, 581
BstMAI	GTCTC	3 cut(s)	277, 440, 449
BstMCI	CGRYCG	2 cut(s)	171, 270
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 155, 593, 628
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	3 cut(s)	146, 263, 581
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	257, 380
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	533
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	185
Cac8I	GCNNGC	6 cut(s)	84, 213, 319, 516, 558, 633
CfoI	GCGC	4 cut(s)	82, 265, 407, 581
Cfr10I	RCCGGY	7 cut(s)	82, 277, 343, 355, 436, 514, 556
Cfr13I	GGNCC	1 cut(s)	658
Cfr42I	CCGCGG	1 cut(s)	147
CseI	GACGC	2 cut(s)	285, 562
CviAII	CATG	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	573
EciI	GGCGGA	3 cut(s)	111, 198, 423
Eco24I	GRGCYC	2 cut(s)	433, 624
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	658
Eco47III	AGCGCT	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	669
EcoT38I	GRGCYC	2 cut(s)	433, 624
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	32, 60, 651, 656
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	1 cut(s)	58
FauI	CCCGC	5 cut(s)	123, 151, 375, 553, 601
Fnu4HI	GCNGC	7 cut(s)	134, 147, 216, 315, 462, 582, 585
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	2 cut(s)	433, 624
Fsp4HI	GCNGC	7 cut(s)	134, 147, 216, 315, 462, 582, 585
FspBI	CTAG	2 cut(s)	318, 597
GlaI	GCGC	4 cut(s)	81, 264, 406, 580
GluI	GCNGC	7 cut(s)	134, 147, 216, 315, 462, 582, 585
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	257, 380
HgaI	GACGC	2 cut(s)	285, 562
HhaI	GCGC	4 cut(s)	82, 265, 407, 581
Hin1I	GRCGYC	2 cut(s)	296, 554
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	4 cut(s)	80, 263, 405, 579
HinP1I	GCGC	4 cut(s)	80, 263, 405, 579
HinfI	GANTC	6 cut(s)	196, 247, 394, 448, 509, 589
HphI	GGTGA	3 cut(s)	267, 291, 412
Hpy188I	TCNGA	9 cut(s)	73, 168, 195, 411, 496, 508, 552, 619, 678
Hpy188III	TCNNGA	1 cut(s)	452
Hpy99I	CGWCG	7 cut(s)	133, 343, 481, 508, 532, 556, 613
HpyAV	CCTTC	1 cut(s)	498
HpyCH4III	ACNGT	2 cut(s)	271, 376
HpyCH4IV	ACGT	2 cut(s)	608, 643
HpyCH4V	TGCA	2 cut(s)	67, 443
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 155, 593, 628
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	2 cut(s)	608, 643
Hsp92I	GRCGYC	2 cut(s)	296, 554
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	4 cut(s)	80, 263, 405, 579
KroI	GCCGGC	3 cut(s)	82, 514, 556
KroNI	GCCGGC	3 cut(s)	84, 516, 558
KspI	CCGCGG	1 cut(s)	147
LmnI	GCTCC	6 cut(s)	91, 97, 103, 412, 436, 619
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	2 cut(s)	318, 597
MaeII	ACGT	2 cut(s)	608, 643
MaeIII	GTNAC	2 cut(s)	48, 297
MboII	GAAGA	1 cut(s)	465
MhlI	GDGCHC	3 cut(s)	433, 624, 643
MlyI	GAGTC	6 cut(s)	190, 241, 388, 442, 518, 598
MmeI	TCCRAC	4 cut(s)	191, 218, 486, 575
MreI	CGCCGGCG	2 cut(s)	514, 556
MroNI	GCCGGC	3 cut(s)	82, 514, 556
MseI	TTAA	1 cut(s)	691
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	2 cut(s)	146, 663
Mva1269I	GAATGC	1 cut(s)	483
MvnI	CGCG	3 cut(s)	146, 263, 581
MwoI	GCNNNNNNNGC	4 cut(s)	130, 155, 593, 628
NaeI	GCCGGC	3 cut(s)	84, 516, 558
NgoMIV	GCCGGC	3 cut(s)	82, 514, 556
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	3 cut(s)	87, 432, 621
NmuCI	GTSAC	2 cut(s)	48, 297
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	3 cut(s)	84, 516, 558
PkrI	GCNGC	7 cut(s)	135, 148, 217, 316, 463, 583, 586
PleI	GAGTC	6 cut(s)	190, 241, 388, 442, 517, 597
PpsI	GAGTC	6 cut(s)	190, 241, 388, 442, 517, 597
PspN4I	GGNNCC	3 cut(s)	87, 432, 621
PspPI	GGNCC	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	691
SatI	GCNGC	7 cut(s)	134, 147, 216, 315, 462, 582, 585
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	6 cut(s)	190, 241, 388, 442, 518, 598
SduI	GDGCHC	3 cut(s)	433, 624, 643
SetI	ASST	2 cut(s)	611, 646
SfaNI	GCATC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	147
SgrAI	CRCCGGYG	2 cut(s)	514, 556
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	57
SspMI	CTAG	2 cut(s)	318, 597
TaaI	ACNGT	2 cut(s)	271, 376
TaiI	ACGT	2 cut(s)	611, 646
TaqI	TCGA	3 cut(s)	245, 479, 530
TauI	GCSGC	7 cut(s)	136, 149, 218, 317, 464, 584, 587
Tru1I	TTAA	1 cut(s)	691
Tru9I	TTAA	1 cut(s)	691
TseFI	GTSAC	2 cut(s)	48, 297
Tsp45I	GTSAC	2 cut(s)	48, 297
TspDTI	ATGAA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	658
XspI	CTAG	2 cut(s)	318, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.