FvH4_3g29990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000928
Physical Location & Seq
Forward (+)
23217447 .. 23225523
8077 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29990.t24

Sequence Viewer

Length: 1260 bp
ATGAAAATTAATGACGATTTTAGTGAAAATGCTACCCATGGAAGAGAAAACGAAGGTGAGCAGTGTGGTCATGGTGTGCCGGTGGGAGAAGAGGCTTGGGAAGAGTATGGATGCATTCTGTGGGATCTTGCTGCAAGTAAAACTCATGCAGAACTCATGGTGAAGAACCTTGTACTTGAAGTGCTCTTAGCAAACCTTATGGTTTCAAAATCTGTTCGTATTATGGAAATTGGCCTTGGAATCATCGGAAACCTGGCTTGTCACAAAGTTCCCATGAAACATATAGTCTCCACGAATGGATTAATTGAATTAATTGTGGATCAGATGTTTCTGGATGATGCTCAATGCTTATGTGAAGTCTGCAGACTGTTAACTGCGGGTCTTCAAAGTAGTGAAGGTGTTACTTGGGCTGAGGCATTGCAGTCGGAACAGAATCTGACCCAAATTTTATGGATTGCAGAAAATAGCTTAAACCCACAGCTTATAGAAAAGAGTGCTGAACTATTGTTGGCGATCATCGAAAGTTCTCAGGATGTTGTGCATATTCTCTTACCACCATTGATGAAGCTGGGCTTAGCAAGTCTATTAATTAATCTCTTGGTTATTGAAGTAAGCAAACTAATGTGTGAAAGAGCCCCTGAAAGGTACCCAATTCTTGATGTAATCCTTCATGCCATTGAAGCTCTTTCTGTTATTGATGGTCATTCCCAGGACATCTGTTTAAACAAGGAACTTTTTCAGCTACTTTGTGACCTGCTCAAGTTCCCTCATAAAGTTGAGGTTGCAAATGCTTGTGTTACAGCTGTAGTTCTAGTGGCAAATATTCTTTCAGATGTACCTACTCTAGCTTCAGAGCTATCACAAGATATGCTTTTCTTACAGGGTCTGCTTGATGTGTTTCCCTTTACTTCGGATGACATAGAAGCAAGGAGCGCACTGTGGAACATTATTGCAAGGTTACTGCTTCGAGTTAAAGAAAATAAAATAAGCTTATCAACTCTCCAGCAGTGTGTTTCGGTTCTAGTTAGCAAATCTGATGTGATTGAAGATGATCTTCTTGACTGCCAGTTAGGTGGCTTAGGATTAAAGGCTAGAAATACAGCTCTCAGAAGGATCATCAGTATATTAAACCAGTGGACTGCTTCGAACAATAAGGAGAATGAAAATGATATAAACATCAATAGATTGTTGGATTGCTGCTGTAAGCATTCTGAAGATGTACCATCTTCAGTTTCTCATGACATGGACCTCAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

46.32

Weight (kDa)

4.69

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 762
Acc65I GGTACC 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 645
AciI CCGC 1 cut(s) 377
AclWI GGATC 3 cut(s) 132, 327, 1121
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 3 cut(s) 834, 1212, 1233
AfaI GTAC 4 cut(s) 174, 647, 837, 1221
AfiI CCNNNNNNNGG 1 cut(s) 642
AgsI TTSAA 7 cut(s) 179, 207, 308, 386, 608, 680, 1046
AjnI CCWGG 2 cut(s) 252, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 3 cut(s) 132, 327, 1121
AlwNI CAGNNNCTG 2 cut(s) 436, 886
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 131, 1197
ApoI RAATTY 1 cut(s) 444
AseI ATTAAT 5 cut(s) 9, 302, 311, 587, 591
Asp700I GAANNNNTTC 1 cut(s) 735
Asp718I GGTACC 1 cut(s) 645
AspLEI GCGC 1 cut(s) 935
AspS9I GGNCC 1 cut(s) 1246
AsuHPI GGTGA 2 cut(s) 68, 172
AsuII TTCGAA 1 cut(s) 1145
AvaII GGWCC 1 cut(s) 1246
BanI GGYRCC 1 cut(s) 645
BanII GRGCYC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 118, 1184
BccI CCATC 2 cut(s) 692, 1231
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 2 cut(s) 254, 710
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 4 cut(s) 812, 845, 1022, 1092
BfmI CTRYAG 2 cut(s) 361, 804
BfuAI ACCTGC 1 cut(s) 762
BisI GCNGC 2 cut(s) 132, 1198
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 2 cut(s) 133, 1199
Bme1390I CCNGG 2 cut(s) 254, 710
Bme18I GGWCC 1 cut(s) 1246
BmgT120I GGNCC 1 cut(s) 1246
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 2 cut(s) 254, 710
BmsI GCATC 2 cut(s) 101, 328
BpiI GAAGAC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 986
Bpu10I CCTNAGC 2 cut(s) 411, 1078
Bpu1102I GCTNAGC 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 1145
BpuEI CTTGAG 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 37, 235, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 642
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 1066, 1132
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 2 cut(s) 254, 710
BseDI CCNNGG 3 cut(s) 37, 235, 708
BseGI GGATG 4 cut(s) 116, 340, 538, 919
BseLI CCNNNNNNNGG 1 cut(s) 642
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 3 cut(s) 402, 542, 1120
BseNI ACTGG 2 cut(s) 1066, 1132
BseXI GCAGC 2 cut(s) 118, 1184
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 642
BsmAI GTCTC 1 cut(s) 292
BsmI GAATGC 2 cut(s) 114, 1207
BsnI GGCC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 186, 637
Bsp143I GATC 5 cut(s) 124, 319, 513, 1051, 1113
Bsp1720I GCTNAGC 1 cut(s) 574
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 3 cut(s) 403, 541, 1119
BspHI TCATGA 1 cut(s) 1237
BspLI GGNNCC 1 cut(s) 647
BspMAI CTGCAG 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 3 cut(s) 132, 327, 1121
BspT104I TTCGAA 1 cut(s) 1145
BspT107I GGYRCC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 1066, 1132
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 37, 235, 708
BssMI GATC 5 cut(s) 124, 319, 513, 1051, 1113
BssT1I CCWWGG 2 cut(s) 37, 235
Bst2UI CCWGG 2 cut(s) 254, 710
Bst4CI ACNGT 2 cut(s) 369, 939
Bst6I CTCTTC 3 cut(s) 37, 84, 96
BstBI TTCGAA 1 cut(s) 1145
BstDEI CTNAG 6 cut(s) 187, 411, 528, 574, 1078, 1106
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 4 cut(s) 116, 340, 538, 919
BstHHI GCGC 1 cut(s) 935
BstKTI GATC 5 cut(s) 127, 322, 516, 1054, 1116
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 5 cut(s) 124, 319, 513, 1051, 1113
BstMWI GCNNNNNNNGC 2 cut(s) 680, 932
BstNI CCWGG 2 cut(s) 254, 710
BstSCI CCNGG 2 cut(s) 252, 708
BstSFI CTRYAG 2 cut(s) 361, 804
BstV1I GCAGC 2 cut(s) 118, 1184
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 1073
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 4 cut(s) 116, 340, 538, 919
BtsI GCAGTG 2 cut(s) 68, 1013
BtsIMutI CAGTG 4 cut(s) 68, 935, 1013, 1139
BveI ACCTGC 1 cut(s) 762
CaiI CAGNNNCTG 2 cut(s) 436, 886
CciI TCATGA 1 cut(s) 1237
CfoI GCGC 1 cut(s) 935
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 1246
Csp6I GTAC 4 cut(s) 173, 646, 836, 1220
CviAII CATG 8 cut(s) 38, 71, 146, 157, 274, 671, 1238, 1243
CviQI GTAC 4 cut(s) 173, 646, 836, 1220
DdeI CTNAG 6 cut(s) 187, 411, 528, 574, 1078, 1106
DpnI GATC 5 cut(s) 126, 321, 515, 1053, 1115
DpnII GATC 5 cut(s) 124, 319, 513, 1051, 1113
DraI TTTAAA 1 cut(s) 723
Eam1104I CTCTTC 3 cut(s) 37, 84, 96
EarI CTCTTC 3 cut(s) 37, 84, 96
Eco130I CCWWGG 2 cut(s) 37, 235
Eco24I GRGCYC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 1246
Eco57I CTGAAG 3 cut(s) 834, 1212, 1233
EcoRII CCWGG 2 cut(s) 252, 708
EcoT14I CCWWGG 2 cut(s) 37, 235
EcoT22I ATGCAT 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 37, 235
FaeI CATG 8 cut(s) 41, 74, 149, 160, 277, 674, 1241, 1246
FalI AAGNNNNNCTT 6 cut(s) 557, 589, 855, 887, 1038, 1070
FatI CATG 8 cut(s) 37, 70, 145, 156, 273, 670, 1237, 1242
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 132, 1198
FokI GGATG 4 cut(s) 123, 347, 545, 926
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 2 cut(s) 132, 1198
FspBI CTAG 4 cut(s) 812, 845, 1022, 1092
GlaI GCGC 1 cut(s) 934
GluI GCNGC 2 cut(s) 132, 1198
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 935
Hin1II CATG 8 cut(s) 41, 74, 149, 160, 277, 674, 1241, 1246
Hin6I GCGC 1 cut(s) 933
HinP1I GCGC 1 cut(s) 933
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 988
HinfI GANTC 2 cut(s) 240, 433
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 68, 172
Hpy166II GTNNAC 2 cut(s) 372, 1137
Hpy188III TCNNGA 5 cut(s) 332, 530, 656, 1058, 1238
Hpy8I GTNNAC 2 cut(s) 372, 1137
HpyAV CCTTC 4 cut(s) 47, 389, 677, 1104
HpyCH4III ACNGT 2 cut(s) 369, 939
HpyCH4V TGCA 9 cut(s) 114, 134, 149, 363, 421, 458, 541, 785, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 932
HpyF3I CTNAG 6 cut(s) 187, 411, 528, 574, 1078, 1106
Hsp92II CATG 8 cut(s) 41, 74, 149, 160, 277, 674, 1241, 1246
HspAI GCGC 1 cut(s) 933
KpnI GGTACC 1 cut(s) 649
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 5 cut(s) 124, 319, 513, 1051, 1113
LmnI GCTCC 1 cut(s) 930
Lsp1109I GCAGC 2 cut(s) 118, 1184
LweI GCATC 2 cut(s) 101, 328
MaeI CTAG 4 cut(s) 812, 845, 1022, 1092
MaeIII GTNAC 5 cut(s) 260, 400, 749, 796, 957
MalI GATC 5 cut(s) 126, 321, 515, 1053, 1115
MboI GATC 5 cut(s) 124, 319, 513, 1051, 1113
MboII GAAGA 9 cut(s) 54, 101, 113, 175, 374, 1046, 1058, 1218, 1226
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 186, 637
MluCI AATT 8 cut(s) 6, 228, 303, 308, 312, 444, 588, 651
MmeI TCCRAC 2 cut(s) 405, 1170
MnlI CCTC 5 cut(s) 85, 406, 772, 777, 1259
Mph1103I ATGCAT 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 254, 710
MssI GTTTAAAC 1 cut(s) 723
Mva1269I GAATGC 2 cut(s) 114, 1207
MvaI CCWGG 2 cut(s) 254, 710
MwoI GCNNNNNNNGC 2 cut(s) 680, 932
NcoI CCATGG 1 cut(s) 37
NdeII GATC 5 cut(s) 124, 319, 513, 1051, 1113
NlaIII CATG 8 cut(s) 41, 74, 149, 160, 277, 674, 1241, 1246
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 2 cut(s) 260, 749
NsiI ATGCAT 1 cut(s) 116
NspV TTCGAA 1 cut(s) 1145
PacI TTAATTAA 1 cut(s) 591
PagI TCATGA 1 cut(s) 1237
PctI GAATGC 2 cut(s) 114, 1207
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 240, 433
PkrI GCNGC 2 cut(s) 133, 1199
PmeI GTTTAAAC 1 cut(s) 723
PshBI ATTAAT 5 cut(s) 9, 302, 311, 587, 591
Psp6I CCWGG 2 cut(s) 252, 708
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 2 cut(s) 252, 708
PspN4I GGNNCC 1 cut(s) 647
PspPI GGNCC 1 cut(s) 1246
PstI CTGCAG 1 cut(s) 365
PstNI CAGNNNCTG 2 cut(s) 436, 886
PsuI RGATCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 4 cut(s) 174, 647, 837, 1221
RsaNI GTAC 4 cut(s) 173, 646, 836, 1220
SatI GCNGC 2 cut(s) 132, 1198
Sau3AI GATC 5 cut(s) 124, 319, 513, 1051, 1113
Sau96I GGNCC 1 cut(s) 1246
ScrFI CCNGG 2 cut(s) 254, 710
SduI GDGCHC 2 cut(s) 186, 637
SfaNI GCATC 2 cut(s) 101, 328
SfcI CTRYAG 2 cut(s) 361, 804
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 1 cut(s) 1246
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 8 cut(s) 6, 228, 303, 308, 312, 444, 588, 651
SsiI CCGC 1 cut(s) 377
SspI AATATT 1 cut(s) 823
SspMI CTAG 4 cut(s) 812, 845, 1022, 1092
StyD4I CCNGG 2 cut(s) 252, 708
StyI CCWWGG 2 cut(s) 37, 235
TaaI ACNGT 2 cut(s) 369, 939
TaqI TCGA 3 cut(s) 519, 967, 1145
TasI AATT 8 cut(s) 6, 228, 303, 308, 312, 444, 588, 651
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 2 cut(s) 240, 433
TscAI CASTG 4 cut(s) 68, 942, 1013, 1139
TseFI GTSAC 2 cut(s) 260, 749
TseI GCWGC 2 cut(s) 131, 1197
Tsp45I GTSAC 2 cut(s) 260, 749
TspDTI ATGAA 5 cut(s) 17, 290, 578, 659, 1176
TspRI CASTG 4 cut(s) 68, 942, 1013, 1139
VpaK11BI GGWCC 1 cut(s) 1246
VspI ATTAAT 5 cut(s) 9, 302, 311, 587, 591
XapI RAATTY 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 4 cut(s) 812, 845, 1022, 1092
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.