Prupe.6G116300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000928
Physical Location & Seq
Forward (+)
8467894 .. 8475212
7319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G116300.5

Sequence Viewer

Length: 1620 bp
ATGGCGGTGGACGCAAAATCAGTACCTCTAGAAGACCAAGAAGAACAAGAACGACAAGTGCAGCGCCATGATGCACCTGCACATAACCCTTCTGCTCCGCCCGATGAGTTCTTTGACATCTCAACAACAGTAGATCCTAGTTATGTGATCTCTCTGATACGGAAGCTTCTACCGGCTAATGCAAGTAATAATCACAACTCGCATGGTGATGTTTTTTATGCCCATGTGCAAGAATTAGAGACTGATCATACAGATAAGACTGCTCCCACTCTGTCTGGAGATAGACTTCTGCACGTATCAAATGATGGATCTGAGAGCATGGAAATTGCTGATGATTTTCATAAAAGTGCTCCTGAGGAAAGACAAAACAATGGTTCATATGATGGAGCTGAACAGTGTGGCCATAGTGTCCCAGTGGGAGAAGAGGCTTGGGAAGAATATGGTTGCATTTTATGGGATCTTGCTGCAAGTAAAACTCATGCAGAACTCATGGTGCAAAACCTTATACTTGAAGTGCTTTTAGCGAACCTTGTGGTTTCACAATCTTTGCGTGCTATGGAAATCACCCTTGGAATTATTGGAAACCTTGCCTGTCACGAAGTTCCCATGAAACATATAGTCTCTACAATTGGATTAATTGGAACAGTTGTGGATCAGTTATTTTCAGAGGATGCTCAGTGCTTATGTGAAGCCTGTAGGCTGTTAACTGTGGGTCTTCAAAGTAGTGAATGTATATCTTGGGCCAAAGAATTGCAGTCTGAACATATTCTGAGCCGCATTTTATGGATTGCGGAAAATAGCTTAAATCCACAGCTTATAGAAAAGAGTGTTGAAGTCTTGTTAGCCACCATTGAAAGTTCAGAGGAAGTTGTGCTTATTCTCCTTCCACCTTTAATGAAGCTGGGCTTAGCAAGTCTATTAATAAATCTCTTGGATTTTGAAATGAGCCAATTATTGAGTGAAAGAGTGCCTGAAAGGTACCCGGTTCTTGATGTAATCCTCCGTTCCATTGAAGCTCTTTCTGTTATTGATGGTCATTCCCAAGAGATTTGTTCAAACAAGGATCTTTTTCGGCTAGTTTGTGACCTGGTCAAACTCCCTGATAAAGTTGAGGTTGCAAATTCTTGTATCACGGCTGGAGTTCTAATTGCAAACATTCTTTCAGATGAACCACATCTAGCTTCAGAGATATCACAGGATTTGCCTTTCTTACAGGGTCTGCTTGACATATTCCCCTTTTCTTCGGAGGATTTGGAAGCAAGGAGTGCACTTTGGAACATCATTGCAAGGTTACTGGTTAGAGTTCAGGAAAATGAAATGAGCCGATCAGCTCTCCAGCAATATGTTTCGGTTCTAGTTAGCAAATCTGATGCGATTGAAGATGATCTTCTGGACTTCCAATTAGATGAATTAAACTCAAAAGCTAGAACTACTTCTCTTAGAAGGATCATCAGTCTTTTAAATCAGTGGACTGCTTCAAAGGATGATGACAAAGAGAATGAAATGATGGGCAACCGATATGAGGATGATATAAACATTGATAGATTGTTGGACTGCTGTTGTAAGCATTCTGAGTATGTACCGCCTGCAGTTTCTCCGGACATGGACTTCAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

540

Amino Acids

60.03

Weight (kDa)

4.47

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
Acc65I GGTACC 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 978
AccIII TCCGGA 1 cut(s) 1597
AciI CCGC 5 cut(s) 5, 98, 775, 791, 1583
AclWI GGATC 6 cut(s) 128, 316, 465, 660, 1071, 1454
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 1 cut(s) 1120
AcuI CTGAAG 1 cut(s) 1167
AfaI GTAC 3 cut(s) 24, 980, 1581
AfiI CCNNNNNNNGG 1 cut(s) 1522
AjnI CCWGG 1 cut(s) 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 9 cut(s) 166, 389, 801, 814, 901, 1016, 1181, 1331, 1424
AluI AGCT 9 cut(s) 166, 389, 801, 814, 901, 1016, 1181, 1331, 1424
Alw21I GWGCWC 2 cut(s) 352, 1270
Alw26I GTCTC 2 cut(s) 233, 625
Alw44I GTGCAC 1 cut(s) 1266
AlwI GGATC 6 cut(s) 128, 316, 465, 660, 1071, 1454
AlwNI CAGNNNCTG 1 cut(s) 1219
Aor13HI TCCGGA 1 cut(s) 1597
AoxI GGCC 2 cut(s) 400, 741
ApaLI GTGCAC 1 cut(s) 1266
ApeKI GCWGC 2 cut(s) 61, 464
ApoI RAATTY 1 cut(s) 1120
AseI ATTAAT 2 cut(s) 635, 920
Asp700I GAANNNNTTC 2 cut(s) 765, 1432
Asp718I GGTACC 1 cut(s) 978
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 1 cut(s) 983
AsuHPI GGTGA 2 cut(s) 218, 556
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 1270
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 1 cut(s) 978
BbsI GAAGAC 2 cut(s) 39, 707
Bbv12I GWGCWC 2 cut(s) 352, 1270
BbvI GCAGC 2 cut(s) 73, 451
BccI CCATC 4 cut(s) 299, 377, 1025, 1501
BceAI ACGGC 1 cut(s) 1149
BciT130I CCWGG 1 cut(s) 1088
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 983
BcoDI GTCTC 2 cut(s) 233, 625
BfaI CTAG 6 cut(s) 29, 138, 1076, 1178, 1355, 1425
BfmI CTRYAG 2 cut(s) 694, 1587
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 3 cut(s) 62, 465, 775
BlpI GCTNAGC 1 cut(s) 907
BlsI GCNGC 3 cut(s) 63, 466, 776
Bme1390I CCNGG 2 cut(s) 983, 1088
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 980
BmrFI CCNGG 2 cut(s) 983, 1088
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 3 cut(s) 61, 661, 1360
BmuI ACTGGG 1 cut(s) 407
BpiI GAAGAC 2 cut(s) 39, 707
BpmI CTGGAG 3 cut(s) 297, 1158, 1319
Bpu1102I GCTNAGC 1 cut(s) 907
BpuMI CCSGG 1 cut(s) 983
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 1 cut(s) 1597
Bsc4I CCNNNNNNNGG 1 cut(s) 1522
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 413, 1299
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 1281
BseAI TCCGGA 1 cut(s) 1597
BseBI CCWGG 1 cut(s) 1088
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 3 cut(s) 676, 1489, 1531
BseLI CCNNNNNNNGG 1 cut(s) 1522
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 5 cut(s) 303, 345, 689, 761, 1563
BseNI ACTGG 2 cut(s) 413, 1299
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 2 cut(s) 73, 451
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 3 cut(s) 63, 80, 275
BshFI GGCC 2 cut(s) 402, 743
BshNI GGYRCC 1 cut(s) 978
BsiHKAI GWGCWC 2 cut(s) 352, 1270
BsiSI CCGG 3 cut(s) 173, 983, 1598
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 1522
BsmAI GTCTC 2 cut(s) 233, 625
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 1567
BsnI GGCC 2 cut(s) 402, 743
Bsp1286I GDGCHC 2 cut(s) 352, 1270
Bsp13I TCCGGA 1 cut(s) 1597
Bsp1720I GCTNAGC 1 cut(s) 907
BspACI CCGC 5 cut(s) 5, 98, 775, 791, 1583
BspANI GGCC 2 cut(s) 402, 743
BspCNI CTCAG 5 cut(s) 304, 346, 688, 762, 1564
BspEI TCCGGA 1 cut(s) 1597
BspLI GGNNCC 1 cut(s) 980
BspMAI CTGCAG 1 cut(s) 1591
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 6 cut(s) 128, 316, 465, 660, 1071, 1454
BspT107I GGYRCC 1 cut(s) 978
BsrDI GCAATG 1 cut(s) 1281
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 413, 1299
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 1 cut(s) 1088
Bst4CI ACNGT 4 cut(s) 130, 396, 646, 709
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 552, 1587
BstDEI CTNAG 7 cut(s) 312, 354, 675, 770, 907, 1439, 1572
BstF5I GGATG 3 cut(s) 676, 1489, 1531
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 233, 625
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1265
BstNI CCWGG 1 cut(s) 1088
BstSCI CCNGG 2 cut(s) 981, 1086
BstSFI CTRYAG 2 cut(s) 694, 1587
BstSLI GKGCMC 1 cut(s) 1270
BstV1I GCAGC 2 cut(s) 73, 451
BstV2I GAAGAC 2 cut(s) 39, 707
BstX2I RGATCY 4 cut(s) 133, 308, 457, 1063
BstYI RGATCY 4 cut(s) 133, 308, 457, 1063
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 2 cut(s) 402, 743
BtsCI GGATG 3 cut(s) 676, 1489, 1531
BtsIMutI CAGTG 4 cut(s) 401, 420, 683, 1472
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 552, 1587
CaiI CAGNNNCTG 1 cut(s) 1219
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 1086
Csp6I GTAC 3 cut(s) 23, 979, 1580
CviAII CATG 8 cut(s) 68, 203, 224, 319, 479, 490, 607, 1603
CviQI GTAC 3 cut(s) 23, 979, 1580
DdeI CTNAG 7 cut(s) 312, 354, 675, 770, 907, 1439, 1572
DraI TTTAAA 1 cut(s) 1461
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 568
Eco32I GATATC 1 cut(s) 1191
Eco57I CTGAAG 1 cut(s) 1167
Eco81I CCTNAGG 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 1086
EcoRV GATATC 1 cut(s) 1191
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 8 cut(s) 71, 206, 227, 322, 482, 493, 610, 1606
FalI AAGNNNNNCTT 6 cut(s) 858, 890, 890, 922, 1371, 1403
FaqI GGGAC 1 cut(s) 395
FatI CATG 8 cut(s) 67, 202, 223, 318, 478, 489, 606, 1602
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 3 cut(s) 62, 465, 775
FokI GGATG 3 cut(s) 683, 1496, 1538
Fsp4HI GCNGC 3 cut(s) 62, 465, 775
FspBI CTAG 6 cut(s) 29, 138, 1076, 1178, 1355, 1425
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 62, 465, 775
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 3 cut(s) 297, 1158, 1319
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 2 cut(s) 402, 743
HapII CCGG 3 cut(s) 173, 983, 1598
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 66
Hin1II CATG 8 cut(s) 71, 206, 227, 322, 482, 493, 610, 1606
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 164
HpaI GTTAAC 1 cut(s) 705
HpaII CCGG 3 cut(s) 173, 983, 1598
HphI GGTGA 2 cut(s) 218, 556
Hpy166II GTNNAC 4 cut(s) 10, 705, 1268, 1470
Hpy188III TCNNGA 8 cut(s) 29, 276, 353, 596, 989, 1307, 1391, 1598
Hpy8I GTNNAC 4 cut(s) 10, 705, 1268, 1470
HpyAV CCTTC 3 cut(s) 99, 893, 1437
HpyCH4III ACNGT 4 cut(s) 130, 396, 646, 709
HpyCH4IV ACGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1265
HpyF3I CTNAG 7 cut(s) 312, 354, 675, 770, 907, 1439, 1572
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 8 cut(s) 71, 206, 227, 322, 482, 493, 610, 1606
HspAI GCGC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 1597
KpnI GGTACC 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 705
LmnI GCTCC 4 cut(s) 100, 268, 355, 386
Lsp1109I GCAGC 2 cut(s) 73, 451
LweI GCATC 3 cut(s) 61, 661, 1360
MabI ACCWGGT 1 cut(s) 1086
MaeI CTAG 6 cut(s) 29, 138, 1076, 1178, 1355, 1425
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 593, 1082, 1290
MboII GAAGA 8 cut(s) 44, 53, 434, 446, 707, 1233, 1379, 1391
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 4 cut(s) 133, 308, 457, 1063
MhlI GDGCHC 2 cut(s) 352, 1270
MlsI TGGCCA 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 1530
MnlI CCTC 9 cut(s) 36, 349, 418, 661, 856, 1010, 1105, 1240, 1516
Mox20I TGGCCA 1 cut(s) 402
MroI TCCGGA 1 cut(s) 1597
MroXI GAANNNNTTC 2 cut(s) 765, 1432
MscI TGGCCA 1 cut(s) 402
MseI TTAA 7 cut(s) 635, 704, 803, 893, 920, 1412, 1460
MslI CAYNNNNRTG 2 cut(s) 207, 345
Msp20I TGGCCA 1 cut(s) 402
MspI CCGG 3 cut(s) 173, 983, 1598
MspR9I CCNGG 2 cut(s) 983, 1088
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 1567
MvaI CCWGG 1 cut(s) 1088
MwoI GCNNNNNNNGC 2 cut(s) 11, 1265
NciI CCSGG 1 cut(s) 983
NdeI CATATG 1 cut(s) 379
NlaIII CATG 8 cut(s) 71, 206, 227, 322, 482, 493, 610, 1606
NlaIV GGNNCC 1 cut(s) 980
NmuCI GTSAC 2 cut(s) 593, 1082
PaqCI CACCTGC 1 cut(s) 85
PctI GAATGC 1 cut(s) 1567
PdmI GAANNNNTTC 2 cut(s) 765, 1432
PflFI GACNNNGTC 1 cut(s) 1088
PkrI GCNGC 3 cut(s) 63, 466, 776
Ppu21I YACGTR 1 cut(s) 295
PshBI ATTAAT 2 cut(s) 635, 920
Psp6I CCWGG 1 cut(s) 1086
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 1 cut(s) 1086
PspN4I GGNNCC 1 cut(s) 980
PspPI GGNCC 1 cut(s) 741
PstI CTGCAG 1 cut(s) 1591
PstNI CAGNNNCTG 1 cut(s) 1219
PsuI RGATCY 4 cut(s) 133, 308, 457, 1063
PsyI GACNNNGTC 1 cut(s) 1088
RsaI GTAC 3 cut(s) 24, 980, 1581
RsaNI GTAC 3 cut(s) 23, 979, 1580
RseI CAYNNNNRTG 2 cut(s) 207, 345
SaqAI TTAA 7 cut(s) 635, 704, 803, 893, 920, 1412, 1460
SatI GCNGC 3 cut(s) 62, 465, 775
Sau96I GGNCC 1 cut(s) 741
ScrFI CCNGG 2 cut(s) 983, 1088
SduI GDGCHC 2 cut(s) 352, 1270
SexAI ACCWGGT 1 cut(s) 1086
SfaNI GCATC 3 cut(s) 61, 661, 1360
SfcI CTRYAG 2 cut(s) 694, 1587
SmiMI CAYNNNNRTG 2 cut(s) 207, 345
SsiI CCGC 5 cut(s) 5, 98, 775, 791, 1583
SspMI CTAG 6 cut(s) 29, 138, 1076, 1178, 1355, 1425
StyD4I CCNGG 2 cut(s) 981, 1086
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 4 cut(s) 130, 396, 646, 709
TaiI ACGT 1 cut(s) 297
TauI GCSGC 1 cut(s) 777
Tru1I TTAA 7 cut(s) 635, 704, 803, 893, 920, 1412, 1460
Tru9I TTAA 7 cut(s) 635, 704, 803, 893, 920, 1412, 1460
TscAI CASTG 4 cut(s) 401, 420, 683, 1472
TseFI GTSAC 2 cut(s) 593, 1082
TseI GCWGC 2 cut(s) 61, 464
Tsp45I GTSAC 2 cut(s) 593, 1082
TspDTI ATGAA 8 cut(s) 329, 366, 623, 911, 1182, 1329, 1422, 1515
TspGWI ACGGA 2 cut(s) 175, 992
TspRI CASTG 4 cut(s) 401, 420, 683, 1472
Tth111I GACNNNGTC 1 cut(s) 1088
VneI GTGCAC 1 cut(s) 1266
VspI ATTAAT 2 cut(s) 635, 920
XapI RAATTY 1 cut(s) 1120
XbaI TCTAGA 1 cut(s) 28
XmnI GAANNNNTTC 2 cut(s) 765, 1432
XspI CTAG 6 cut(s) 29, 138, 1076, 1178, 1355, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.