Rorug05G0296100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000928
Physical Location & Seq
Forward (+)
34142759 .. 34144396
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0296100.1

Sequence Viewer

Length: 1158 bp
ATGTTGGTAAATGAGTTTGTTTATGGTCCTTTGTTTTGCAATGCAGTACATCCAGATTATTTTACCATGAAAGTACATCATGGTGGATATGTAGATTACATAGAAAATAAGTATGTTGGTGGAAGCATATCTTATTACGATCATGTGGACAAGGACAGGATGAGCTTGACTGAGGTAGATGGGATGGTGAGGAGTATTAATCCTGCTTATGTTGGGAGAAGGATTGACTATTGGTACTCAATAGGATATGAGGATGATGCAATAACGAAGTTGAACACTGACAAGGATGTGATCACAACATGTTGTTGTGTGCCAGAGATAAGGGTGGTGATACTATATCTTGACCACAAGGATTTGTACGATGATCAACAAGAAGAAGAACTTGATGACTTATTTATGTATGAGGACCAAGTACCAGAGTGGGGGTTTAGTCAAGCTACAACCAGTGGGGTTGTCATTGAGGAACTTCCTGATTCACCAAGGAAGCCAAGAACATCTGTGAAGATTGAAGAGCTCCCTCCTTCTCCTAAGAAGCAACCTGAGGTGGGCAATGAACAAAAGGCTAGAAGATTTAAAAGGTGTGCAGAAAGGAAGAAGCTGCCTCCTGTGATTATTAGGGAGCCTCAAGATGATGTTCCTACTCAACAGAGCAGAGCTCCAACCATTGATCCCAGTGATAAGGGAAAGAAGAAATTGGAGACTGAAGAAGTTGATGACTTTGATGATAGTTCTGATGGAATGGATGGACAAGTTGATGGATGGGTTGAAGAAGAGGAATCTGAGGAAAATGATGAGTTTTCTGGAGAAGATAATTCTGAGGATGATGATTGTAATCCTGCTGCAGATGATGATGAGTATACAACATATGGAGTTGATAATGATTTTTGGTTTGATTGGTTAACAGAAGAGGAGCATGAAGATACCCTCATGATTAAGACATACCATGGAGAGCATAACTTTGCAAGAGTATATGAGAATAGTACTGTGAAGACCCCCTACCTCACTGATAAGTTTGCAGACCAGATAAAGTTGAATCCTAACATTTCAACAGAAGCACTTGCACAGACCATGGCAGCTGGAGTGAGAGCAAGAGTTTCTTTTCAACAAGCTTATAGGACCAAGAAGGCAGCACTGAAGAGGATTGAGAGGTCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

44.37

Weight (kDa)

4.47

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 19 - 104 2.8e-10 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 857
AclWI GGATC 1 cut(s) 662
AcuI CTGAAG 2 cut(s) 723, 1154
AfaI GTAC 6 cut(s) 48, 75, 236, 359, 414, 982
AfiI CCNNNNNNNGG 2 cut(s) 422, 545
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 6 cut(s) 274, 509, 767, 1033, 1047, 1103
AluBI AGCT 7 cut(s) 165, 437, 514, 598, 656, 1076, 1109
AluI AGCT 7 cut(s) 165, 437, 514, 598, 656, 1076, 1109
Alw21I GWGCWC 2 cut(s) 516, 658
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 1 cut(s) 662
ApeKI GCWGC 4 cut(s) 598, 839, 1073, 1127
AseI ATTAAT 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 26, 406, 1116
AsuHPI GGTGA 3 cut(s) 199, 340, 468
AvaII GGWCC 3 cut(s) 26, 406, 1116
AxyI CCTNAGG 1 cut(s) 540
BanII GRGCYC 2 cut(s) 516, 658
BarI GAAGNNNNNNTAC 2 cut(s) 980, 1012
BbsI GAAGAC 1 cut(s) 995
Bbv12I GWGCWC 2 cut(s) 516, 658
BbvI GCAGC 4 cut(s) 585, 826, 1085, 1139
BccI CCATC 6 cut(s) 173, 178, 728, 737, 749, 753
BclI TGATCA 2 cut(s) 291, 364
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 840
BisI GCNGC 4 cut(s) 599, 840, 1074, 1128
BlsI GCNGC 4 cut(s) 600, 841, 1075, 1129
BmcAI AGTACT 1 cut(s) 982
Bme18I GGWCC 3 cut(s) 26, 406, 1116
BmgT120I GGNCC 3 cut(s) 26, 406, 1116
BmiI GGNNCC 1 cut(s) 621
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 995
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpmI CTGGAG 2 cut(s) 822, 1098
BpuEI CTTGAG 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 3 cut(s) 479, 943, 1068
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 545
Bse1I ACTGG 2 cut(s) 444, 672
Bse21I CCTNAGG 1 cut(s) 540
Bse3DI GCAATG 2 cut(s) 46, 556
Bse8I GATNNNNATC 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 479, 943, 1068
BseGI GGATG 8 cut(s) 49, 165, 189, 259, 292, 748, 764, 826
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 2 cut(s) 422, 545
BseMI GCAATG 2 cut(s) 46, 556
BseMII CTCAG 4 cut(s) 162, 531, 771, 807
BseNI ACTGG 2 cut(s) 444, 672
BseRI GAGGAG 2 cut(s) 205, 923
BseXI GCAGC 4 cut(s) 585, 826, 1085, 1139
BsgI GTGCAG 1 cut(s) 603
BsiHKAI GWGCWC 2 cut(s) 516, 658
BslI CCNNNNNNNGG 2 cut(s) 422, 545
BsmAI GTCTC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 516, 658
Bsp143I GATC 4 cut(s) 139, 291, 364, 667
Bsp19I CCATGG 2 cut(s) 943, 1068
BspCNI CTCAG 4 cut(s) 163, 532, 772, 808
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 504
BsrDI GCAATG 2 cut(s) 46, 556
BsrI ACTGG 2 cut(s) 444, 672
BssECI CCNNGG 3 cut(s) 479, 943, 1068
BssMI GATC 4 cut(s) 139, 291, 364, 667
BssNAI GTATAC 1 cut(s) 858
BssT1I CCWWGG 3 cut(s) 479, 943, 1068
Bst1107I GTATAC 1 cut(s) 858
Bst4CI ACNGT 1 cut(s) 985
Bst6I CTCTTC 4 cut(s) 504, 765, 900, 1130
BstDEI CTNAG 5 cut(s) 171, 528, 540, 780, 816
BstDSI CCRYGG 2 cut(s) 943, 1068
BstF5I GGATG 8 cut(s) 49, 165, 189, 259, 292, 748, 764, 826
BstKTI GATC 4 cut(s) 142, 294, 367, 670
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 4 cut(s) 139, 291, 364, 667
BstNSI RCATGY 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 4 cut(s) 585, 826, 1085, 1139
BstV2I GAAGAC 1 cut(s) 995
BstZ17I GTATAC 1 cut(s) 858
Bsu36I CCTNAGG 1 cut(s) 540
BtgI CCRYGG 2 cut(s) 943, 1068
BtsCI GGATG 8 cut(s) 49, 165, 189, 259, 292, 748, 764, 826
BtsIMutI CAGTG 5 cut(s) 276, 451, 679, 1002, 1130
CciI TCATGA 1 cut(s) 927
Cfr13I GGNCC 3 cut(s) 26, 406, 1116
Csp6I GTAC 6 cut(s) 47, 74, 235, 358, 413, 981
CviAII CATG 8 cut(s) 67, 80, 143, 300, 914, 928, 944, 1069
CviQI GTAC 6 cut(s) 47, 74, 235, 358, 413, 981
DdeI CTNAG 5 cut(s) 171, 528, 540, 780, 816
DpnI GATC 4 cut(s) 141, 293, 366, 669
DpnII GATC 4 cut(s) 139, 291, 364, 667
DraI TTTAAA 1 cut(s) 574
Eam1104I CTCTTC 4 cut(s) 504, 765, 900, 1130
EarI CTCTTC 4 cut(s) 504, 765, 900, 1130
Ecl136II GAGCTC 2 cut(s) 514, 656
Eco130I CCWWGG 3 cut(s) 479, 943, 1068
Eco24I GRGCYC 2 cut(s) 516, 658
Eco47I GGWCC 3 cut(s) 26, 406, 1116
Eco53kI GAGCTC 2 cut(s) 514, 656
Eco57I CTGAAG 2 cut(s) 723, 1154
Eco81I CCTNAGG 1 cut(s) 540
EcoICRI GAGCTC 2 cut(s) 514, 656
EcoT14I CCWWGG 3 cut(s) 479, 943, 1068
EcoT38I GRGCYC 2 cut(s) 516, 658
ErhI CCWWGG 3 cut(s) 479, 943, 1068
FaeI CATG 8 cut(s) 70, 83, 146, 303, 917, 931, 947, 1072
FalI AAGNNNNNCTT 6 cut(s) 115, 147, 366, 398, 1081, 1113
FatI CATG 8 cut(s) 66, 79, 142, 299, 913, 927, 943, 1068
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 2 cut(s) 291, 364
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 4 cut(s) 599, 840, 1074, 1128
FokI GGATG 8 cut(s) 36, 172, 196, 266, 299, 755, 771, 833
FriOI GRGCYC 2 cut(s) 516, 658
Fsp4HI GCNGC 4 cut(s) 599, 840, 1074, 1128
FspBI CTAG 1 cut(s) 564
GluI GCNGC 4 cut(s) 599, 840, 1074, 1128
GsuI CTGGAG 2 cut(s) 822, 1098
Hin1II CATG 8 cut(s) 70, 83, 146, 303, 917, 931, 947, 1072
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HindIII AAGCTT 1 cut(s) 1107
HinfI GANTC 3 cut(s) 473, 776, 1033
HpaI GTTAAC 1 cut(s) 900
HphI GGTGA 3 cut(s) 199, 340, 468
Hpy166II GTNNAC 3 cut(s) 148, 858, 900
Hpy188I TCNGA 3 cut(s) 733, 781, 817
Hpy188III TCNNGA 6 cut(s) 53, 341, 470, 626, 801, 928
Hpy8I GTNNAC 3 cut(s) 148, 858, 900
HpyAV CCTTC 3 cut(s) 213, 531, 1117
HpyCH4III ACNGT 1 cut(s) 985
HpyCH4V TGCA 8 cut(s) 39, 44, 260, 584, 842, 962, 1016, 1061
HpyF3I CTNAG 5 cut(s) 171, 528, 540, 780, 816
Hsp92II CATG 8 cut(s) 70, 83, 146, 303, 917, 931, 947, 1072
Ksp22I TGATCA 2 cut(s) 291, 364
KspAI GTTAAC 1 cut(s) 900
Kzo9I GATC 4 cut(s) 139, 291, 364, 667
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 4 cut(s) 519, 619, 661, 910
Lsp1109I GCAGC 4 cut(s) 585, 826, 1085, 1139
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 564
MalI GATC 4 cut(s) 141, 293, 366, 669
MboI GATC 4 cut(s) 139, 291, 364, 667
MhlI GDGCHC 2 cut(s) 516, 658
MluCI AATT 2 cut(s) 692, 811
MmeI TCCRAC 1 cut(s) 683
MseI TTAA 4 cut(s) 198, 573, 899, 933
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 1076
NcoI CCATGG 2 cut(s) 943, 1068
NdeI CATATG 1 cut(s) 865
NdeII GATC 4 cut(s) 139, 291, 364, 667
NlaIII CATG 8 cut(s) 70, 83, 146, 303, 917, 931, 947, 1072
NlaIV GGNNCC 1 cut(s) 621
NspI RCATGY 1 cut(s) 303
PagI TCATGA 1 cut(s) 927
PciI ACATGT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 3 cut(s) 473, 776, 1033
PkrI GCNGC 4 cut(s) 600, 841, 1075, 1129
PscI ACATGT 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 198
Psp124BI GAGCTC 2 cut(s) 516, 658
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 3 cut(s) 26, 406, 1116
PstI CTGCAG 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 6 cut(s) 48, 75, 236, 359, 414, 982
RsaNI GTAC 6 cut(s) 47, 74, 235, 358, 413, 981
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 2 cut(s) 516, 658
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 4 cut(s) 198, 573, 899, 933
SatI GCNGC 4 cut(s) 599, 840, 1074, 1128
Sau3AI GATC 4 cut(s) 139, 291, 364, 667
Sau96I GGNCC 3 cut(s) 26, 406, 1116
ScaI AGTACT 1 cut(s) 982
SduI GDGCHC 2 cut(s) 516, 658
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 840
SinI GGWCC 3 cut(s) 26, 406, 1116
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 2 cut(s) 692, 811
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 2 cut(s) 516, 658
StyI CCWWGG 3 cut(s) 479, 943, 1068
TaaI ACNGT 1 cut(s) 985
TasI AATT 2 cut(s) 692, 811
TatI WGTACW 3 cut(s) 46, 73, 980
TfiI GAWTC 3 cut(s) 473, 776, 1033
Tru1I TTAA 4 cut(s) 198, 573, 899, 933
Tru9I TTAA 4 cut(s) 198, 573, 899, 933
TscAI CASTG 5 cut(s) 283, 451, 679, 1009, 1137
TseI GCWGC 4 cut(s) 598, 839, 1073, 1127
TspDTI ATGAA 3 cut(s) 83, 567, 930
TspRI CASTG 5 cut(s) 283, 451, 679, 1009, 1137
VpaK11BI GGWCC 3 cut(s) 26, 406, 1116
VspI ATTAAT 1 cut(s) 198
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.