Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000928

Physical Location & Seq

Genomic Coordinates Reverse (-)

34110596 .. 34111172

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0295800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTTATTGCAATAAGGGACAAGGCTTTCAGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTGTTGATACATGAATTGTTTATGGAAGGTCTGGGAATGCAAAGAAAGCGTTTATATATCTTTCGCGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATGCATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCATAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGATCATTGTGCTAATGGGAATATGGAGCGTGCATTTTTGCTTTTGAGGGAGATCGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAAGGAAAGTTGAGGAAGCTCGAAACTTCTGGATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.68

Weight (kDa)

9.05

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	7 - 35	9.2e-06	PPR repeat family
PPR_3	PF13812	14 - 75	3.1e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	14 - 141	3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	85 - 141	5.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	92 - 123	5e-08	PPR repeat
PPR_2	PF13041	96 - 145	6.1e-14	PPR repeat family
PPR_1	PF12854	129 - 155	1.1e-07	PPR repeat
PPR_2	PF13041	131 - 156	9.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22820 AT5G22820 AT5G22820
fragaria_vesca	FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990 FvH4_3g29990
malus_domestica	MD11G1153600.v1.1
prunus_persica	Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1 Prupe.6G116300_v2.0.a1
pyrus_communis	pycom11g12540
rosa_chinensis	RchiOBHm_Chr5g0055941
rosa_laevigata	RLG00000035028 RLG00000035033
rosa_multiflora	Rmu_sc0004834.1_g000012 Rmu_sc0005276.1_g000006
rosa_roxburghii	Rroxscaffold_1G00024360
rosa_rugosa	Rorug05G0295600 Rorug05G0295700 Rorug05G0295800 Rorug05G0295900 Rorug05G0296000 Rorug05G0296100 Rorug05G0296200
rosa_samantha	Rh5AG367500 Rh5BG377600 Rh5CG400900 Rh5DG390900
rosa_wichuraiana	Rw5G034470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	2 cut(s)	297, 476
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
AlwI	GGATC	2 cut(s)	297, 476
ApeKI	GCWGC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	319
BfmI	CTRYAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	430
BisI	GCNGC	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	431
BmsI	GCATC	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	372
BseGI	GGATG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	289, 319, 369, 468
Bsp68I	TCGCGA	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	434
BspPI	GGATC	2 cut(s)	297, 476
BssMI	GATC	4 cut(s)	289, 319, 369, 468
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	292, 322, 372, 471
BstMBI	GATC	4 cut(s)	289, 319, 369, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	388
BtuMI	TCGCGA	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	429
ClaI	ATCGAT	1 cut(s)	372
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	3 cut(s)	26, 181, 455
CviKI_1	RGCY	3 cut(s)	26, 181, 455
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	291, 321, 371, 470
DpnII	GATC	4 cut(s)	289, 319, 369, 468
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	101
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	430
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	430
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	1 cut(s)	430
HaeII	RGCGCY	1 cut(s)	430
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	3 cut(s)	152, 392, 466
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	49, 107, 376
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	7 cut(s)	11, 127, 200, 271, 350, 421, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	289, 319, 369, 468
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	5 cut(s)	104, 300, 405, 418, 451
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	4 cut(s)	291, 321, 371, 470
MboI	GATC	4 cut(s)	289, 319, 369, 468
MboII	GAAGA	3 cut(s)	64, 241, 274
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	85, 101
MnlI	CCTC	3 cut(s)	235, 357, 442
Mph1103I	ATGCAT	1 cut(s)	202
MslI	CAYNNNNRTG	2 cut(s)	276, 393
MspI	CCGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	129
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	4 cut(s)	289, 319, 369, 468
NlaIII	CATG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	400
NruI	TCGCGA	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	276, 393
SatI	GCNGC	1 cut(s)	430
Sau3AI	GATC	4 cut(s)	289, 319, 369, 468
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	3 cut(s)	118, 387, 457
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	2 cut(s)	276, 393
Sse9I	AATT	2 cut(s)	85, 101
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	372, 457
TasI	AATT	2 cut(s)	85, 101
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	429
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	6 cut(s)	114, 171, 251, 377, 395, 411
Tth111I	GACNNNGTC	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.