Rorug05G0296200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000928
Physical Location & Seq
Forward (+)
34145554 .. 34146304
751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0296200.1

Sequence Viewer

Length: 579 bp
ATGGCCATTTACTCTAACACTGTGAAACCTGTTAATGGTATGGACTTATGGCTCCCTTCTGATGAACGTACCATCCTCCCGCCACAATACAATAGGCAGCCTGGTAGGCCAAGGACCAAGAGGATAAAAGATGCATTTGAGAAGGAGACTGATGGTCCTAAGCTTGGAAGGGTTCAAAAATCACTGAAGTGTAGCAATTGTTGCATTTTGGGCCACAATATGAAGACTTGCCTTAGGCACCTACCACCTAAGACAGCAGCAACTAAAGGTACCAATAAGAGAAAGCTCAACAATGGAGATGCATCAACTACTCAACCTCAGGCAAAGGGTAGCAAAAGGCCCCTAAAGTCAAAGAATGAGCTCAGATCAAAGGCAAAGCAGAAAGCTGTGGAACAAAAGAAAAAATACAATGAAAAGAAGGCAGCAGCAAGAGCTTCAACAGTTAGACTTACTGCAACCAAAGGTAGACCACCAAGAGTTCCCTCAAGCAAGGGTAAAGATGCTTCTGCACAAACTTCACAAGCTTCATCCAAGTCATCTGTAAGGATTAGAGAAAATGCAAAGAGTGGTGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.12

Weight (kDa)

10.68

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 237, 269
AccI GTMKAC 1 cut(s) 466
AciI CCGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 70, 271
AfiI CCNNNNNNNGG 2 cut(s) 35, 164
AgsI TTSAA 2 cut(s) 176, 438
AhdI GACNNNNNGTC 1 cut(s) 153
AjnI CCWGG 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 6 cut(s) 163, 286, 361, 386, 434, 524
AluI AGCT 6 cut(s) 163, 286, 361, 386, 434, 524
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 4 cut(s) 3, 107, 211, 338
ApeKI GCWGC 4 cut(s) 97, 257, 422, 425
Asp718I GGTACC 1 cut(s) 269
AspS9I GGNCC 4 cut(s) 114, 155, 211, 339
AvaII GGWCC 2 cut(s) 114, 155
AxyI CCTNAGG 2 cut(s) 233, 318
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 237, 269
BanII GRGCYC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 487, 519
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 109, 269, 434, 437
BccI CCATC 2 cut(s) 80, 146
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 106
BisI GCNGC 4 cut(s) 98, 258, 423, 426
BlsI GCNGC 4 cut(s) 99, 259, 424, 427
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 2 cut(s) 114, 155
BmeRI GACNNNNNGTC 1 cut(s) 153
BmgT120I GGNCC 4 cut(s) 114, 155, 211, 339
BmiI GGNNCC 4 cut(s) 53, 239, 271, 341
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 4 cut(s) 121, 289, 311, 490
BpiI GAAGAC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 164
Bse21I CCTNAGG 2 cut(s) 233, 318
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 72, 527
BseLI CCNNNNNNNGG 2 cut(s) 35, 164
BseMII CTCAG 2 cut(s) 332, 376
BseXI GCAGC 4 cut(s) 109, 269, 434, 437
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 4 cut(s) 5, 109, 213, 340
BshNI GGYRCC 2 cut(s) 237, 269
BsiHKAI GWGCWC 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 35, 164
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 4 cut(s) 5, 109, 213, 340
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 1 cut(s) 365
BspACI CCGC 1 cut(s) 80
BspANI GGCC 4 cut(s) 5, 109, 213, 340
BspCNI CTCAG 2 cut(s) 331, 375
BspLI GGNNCC 4 cut(s) 53, 239, 271, 341
BspT107I GGYRCC 2 cut(s) 237, 269
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 22, 442
BstAPI GCANNNNNTGC 1 cut(s) 201
BstDEI CTNAG 5 cut(s) 159, 233, 249, 318, 362
BstF5I GGATG 2 cut(s) 72, 527
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 4 cut(s) 106, 201, 210, 431
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 109, 269, 434, 437
BstV2I GAAGAC 1 cut(s) 230
Bsu36I CCTNAGG 2 cut(s) 233, 318
BsuRI GGCC 4 cut(s) 5, 109, 213, 340
BtsCI GGATG 2 cut(s) 72, 527
BtsIMutI CAGTG 2 cut(s) 18, 182
Cfr13I GGNCC 4 cut(s) 114, 155, 211, 339
Csp6I GTAC 2 cut(s) 69, 270
CviQI GTAC 2 cut(s) 69, 270
DdeI CTNAG 5 cut(s) 159, 233, 249, 318, 362
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DriI GACNNNNNGTC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 114, 155
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 206
Eco81I CCTNAGG 2 cut(s) 233, 318
EcoICRI GAGCTC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 110
EcoT22I ATGCAT 2 cut(s) 136, 304
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 110
FaiI YATR 3 cut(s) 41, 49, 221
FauI CCCGC 1 cut(s) 87
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 4 cut(s) 98, 258, 423, 426
FokI GGATG 2 cut(s) 59, 514
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 98, 258, 423, 426
GluI GCNGC 4 cut(s) 98, 258, 423, 426
HaeIII GGCC 4 cut(s) 5, 109, 213, 340
HindIII AAGCTT 2 cut(s) 161, 522
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 61, 365
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 4 cut(s) 66, 136, 162, 412
HpyCH4III ACNGT 2 cut(s) 22, 442
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 6 cut(s) 134, 204, 302, 455, 509, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 201, 210, 431
HpyF3I CTNAG 5 cut(s) 159, 233, 249, 318, 362
HpySE526I ACGT 1 cut(s) 67
KpnI GGTACC 1 cut(s) 273
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 4 cut(s) 42, 87, 114, 305
Lsp1109I GCAGC 4 cut(s) 109, 269, 434, 437
LweI GCATC 4 cut(s) 121, 289, 311, 490
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 1 cut(s) 235
MfeI CAATTG 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 196
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 86, 114, 327, 493
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 136, 304
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 106, 201, 210, 431
NdeII GATC 1 cut(s) 365
NlaIV GGNNCC 4 cut(s) 53, 239, 271, 341
NsiI ATGCAT 2 cut(s) 136, 304
OliI CACNNNNGTG 1 cut(s) 187
PkrI GCNGC 4 cut(s) 99, 259, 424, 427
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 53, 239, 271, 341
PspPI GGNCC 4 cut(s) 114, 155, 211, 339
RsaI GTAC 2 cut(s) 70, 271
RsaNI GTAC 2 cut(s) 69, 270
RseI CAYNNNNRTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 4 cut(s) 98, 258, 423, 426
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 4 cut(s) 114, 155, 211, 339
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 4 cut(s) 121, 289, 311, 490
SinI GGWCC 2 cut(s) 114, 155
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 80
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 22, 442
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 196
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 2 cut(s) 25, 189
TseI GCWGC 4 cut(s) 97, 257, 422, 425
TspDTI ATGAA 4 cut(s) 78, 236, 426, 516
TspRI CASTG 2 cut(s) 25, 189
VpaK11BI GGWCC 2 cut(s) 114, 155
XmiI GTMKAC 1 cut(s) 466
Zsp2I ATGCAT 2 cut(s) 136, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.