FvH4_3g30820

Nodulin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
24247954 .. 24249588
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30820.t1

Sequence Viewer

Length: 1635 bp
ATGGCTGGAACCGGTGCCACTTATCTGTTCAGTTCTTATTCCAAAGACATCAAGTCCACTCTTGGCTATGATCAATCAACTCTCAACTTGCTTAGCTTCTTCAAGGACCTTGGTGCAAATGTGGGAGTCCTCGCATGCCTAATAGGTGAAGTAACTCCTACTTGGTTTGTTCTCCTAGTTGGCTCTGCCATGAATTTTGCAGGGTATTTCATGATCTGGCTTGCTGTCACTGGTAAAATAGCCAAACCTAAAGTCTGGCAGATGTGCCTTTACATTTGTATTGGGGCCAATTCTCAGAATTTTGTAAACACAGGAGCCCTCGTCACTTGTGTTAAGAATTTCCCAGAAAGTAGAGGTGTTATGCTTGGTTTGTTAAAGGGTTTTACTGGGCTTAGTGGAGCAATTTTCACCCAAATTTACTTGGCCATTTATCCAAACGATTCAAAGTCTTTGATTCTTTTGATTGGTTGGCTTCCTGCTGCTCTTTCAGTCAGTTTTGTATACACCATTCGTCCAATGAAAGTTGTTAGGCAACAAAATGAGCTGAGAGTCTTTTACCACTTTCTCTATATCTCACTTGCTCTTGGATTTTTCCTCATGGTAATGACACTTCTTGAAAAGACAATCACTTTCTCTCGTGCTGCTTATGCGGGAAGCACCACCGTGGTTTGTATGATCATGTTCATGCCTCTTGGAATTGCAATCAGAGAAGAGCTTGCACTCTGGAATCTCAAGAGACAACCTGTTGATTCTCCAGTTGAGGTGATCATTGATAAACCACCAAACTCAGTTTCAGAAATTCAAGAATTGGATTCATTCCCACCTAATTCCTCATCAGGCCAGGAAAAGAAAGCACAGACTACTGCTAGTAGTACTACTACTACATCTTGCGGTGGTGATATATGCAATAAGCCAGAAAGAGGGGAAGACTACACAATATTACAAGCACTTTTGAGTATGGATATGATCATTCTATTCATTGCAACTTTTTGTGGATTGGGGTCAAGTTTGACAGCAATAGACAATTTGGGACAAATTGGTGAGGCTCTGGGATATCCCGCAAAGACAGTAAGCACTTTTGTGTCATTAGTGAGCATTTGGAACTATTTTGGGAGGGTATTTTCTGGTTTTGTCTCTGAAAGCCTAATGGTGAAGTGGAAAGTTCCAAGAACACTCATGATGACCTTCACCCTTATTATCTCAGCTATTGCATATATCTCCATTGCTTTCCCATTCCCTGGTTCAGTTTATATGGCCTCAATTATGATTGGGGTTTCTTTTGGTGCTCAATTGACACTGCTCTTCACAATCATATCTGAGCTGTTTGGGCTCAAGTACTATGCTACATTGTTCAACTGCGGGCAGCTAGCCAGTCCTCTAGGGTCTTACATTCTAAATGTGAGGCTCACAGGGATGCTCTATGATCGAGAAGCTTTGAAGGCTTTGGCAAAGAAAGGGACGACAAGATCTTCAGTGAAGGAGCTGATTTGCATTGGGGCTCAGTGTTACAGGTTGTCATTTACAATTTTGGCTGGTATCACATTCTTTGGTGCTCTTGTTTCACTGGTTCTAGTGGTTAGGACTAGAGAGTTCTACAAAGGTGAAATATACAAGAAATATAGAGTAGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

59.74

Weight (kDa)

9.05

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 2 - 234 3.1e-89 Nodulin-like
NFD4_C PF23262 319 - 532 3.3e-15 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 1238
AccI GTMKAC 1 cut(s) 501
AciI CCGC 4 cut(s) 650, 891, 1059, 1359
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 5 cut(s) 193, 298, 337, 414, 798
AcuI CTGAAG 1 cut(s) 1455
AfaI GTAC 2 cut(s) 874, 1337
AfiI CCNNNNNNNGG 2 cut(s) 920, 1238
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 6 cut(s) 103, 444, 617, 803, 1354, 1438
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 840, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AleI CACNNNNGTG 2 cut(s) 662, 1079
AluBI AGCT 8 cut(s) 96, 544, 715, 1205, 1321, 1366, 1433, 1483
AluI AGCT 8 cut(s) 96, 544, 715, 1205, 1321, 1366, 1433, 1483
Alw21I GWGCWC 2 cut(s) 1288, 1555
Alw26I GTCTC 2 cut(s) 730, 1138
AoxI GGCC 4 cut(s) 285, 423, 838, 1254
ApeKI GCWGC 3 cut(s) 479, 641, 1363
ApoI RAATTY 5 cut(s) 193, 298, 337, 414, 798
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 106, 285
AsuHPI GGTGA 8 cut(s) 158, 400, 775, 908, 1052, 1162, 1180, 1613
AsuNHI GCTAGC 1 cut(s) 1366
AvaII GGWCC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 425
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 3 cut(s) 319, 1332, 1501
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 933
Bbv12I GWGCWC 2 cut(s) 1288, 1555
BbvI GCAGC 3 cut(s) 466, 628, 1375
BciT130I CCWGG 2 cut(s) 842, 1239
BclI TGATCA 4 cut(s) 70, 675, 765, 966
BcoDI GTCTC 2 cut(s) 730, 1138
BfaI CTAG 6 cut(s) 176, 867, 1367, 1379, 1571, 1584
BglII AGATCT 1 cut(s) 1466
BisI GCNGC 3 cut(s) 480, 642, 1364
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 3 cut(s) 481, 643, 1365
BmcAI AGTACT 2 cut(s) 874, 1337
Bme1390I CCNGG 2 cut(s) 842, 1239
Bme18I GGWCC 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 106, 285
BmiI GGNNCC 4 cut(s) 10, 16, 286, 316
BmrFI CCNGG 2 cut(s) 842, 1239
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 1404
BmtI GCTAGC 1 cut(s) 1370
BmuI ACTGGG 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 933
BpmI CTGGAG 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 92
BpuEI CTTGAG 2 cut(s) 716, 1316
BsaJI CCNNGG 3 cut(s) 109, 663, 1237
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 1238
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 5 cut(s) 235, 391, 755, 1371, 1569
Bse3DI GCAATG 2 cut(s) 978, 1221
BseBI CCWGG 2 cut(s) 842, 1239
BseDI CCNNGG 3 cut(s) 109, 663, 1237
BseGI GGATG 1 cut(s) 1419
BseLI CCNNNNNNNGG 2 cut(s) 920, 1238
BseMI GCAATG 2 cut(s) 978, 1221
BseMII CTCAG 6 cut(s) 308, 536, 801, 1215, 1308, 1514
BseNI ACTGG 5 cut(s) 235, 391, 755, 1371, 1569
BseXI GCAGC 3 cut(s) 466, 628, 1375
BshFI GGCC 4 cut(s) 287, 425, 840, 1256
BshNI GGYRCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 1288, 1555
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 1044, 1471
BslI CCNNNNNNNGG 2 cut(s) 920, 1238
BsmAI GTCTC 2 cut(s) 730, 1138
BsmFI GGGAC 2 cut(s) 1044, 1471
BsnI GGCC 4 cut(s) 287, 425, 840, 1256
Bsp1286I GDGCHC 5 cut(s) 319, 1288, 1332, 1501, 1555
Bsp143I GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 4 cut(s) 650, 891, 1059, 1359
BspANI GGCC 4 cut(s) 287, 425, 840, 1256
BspCNI CTCAG 6 cut(s) 307, 537, 800, 1214, 1309, 1513
BspHI TCATGA 2 cut(s) 210, 1176
BspLI GGNNCC 4 cut(s) 10, 16, 286, 316
BspOI GCTAGC 1 cut(s) 1370
BspQI GCTCTTC 2 cut(s) 705, 1307
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 978, 1221
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 5 cut(s) 235, 391, 755, 1371, 1569
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 109, 663, 1237
BssMI GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
BssNAI GTATAC 1 cut(s) 502
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 109
Bst1107I GTATAC 1 cut(s) 502
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 842, 1239
Bst4CI ACNGT 2 cut(s) 664, 1069
Bst6I CTCTTC 2 cut(s) 705, 1307
BstC8I GCNNGC 5 cut(s) 136, 222, 717, 1361, 1368
BstDEI CTNAG 8 cut(s) 92, 294, 392, 545, 787, 1201, 1317, 1500
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 1 cut(s) 1419
BstKTI GATC 7 cut(s) 73, 216, 678, 768, 969, 1426, 1469
BstMAI GTCTC 2 cut(s) 730, 1138
BstMBI GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
BstMWI GCNNNNNNNGC 3 cut(s) 647, 1327, 1439
BstNI CCWGG 2 cut(s) 842, 1239
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 840, 1237
BstV1I GCAGC 3 cut(s) 466, 628, 1375
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 1 cut(s) 1466
BstYI RGATCY 1 cut(s) 1466
BstZ17I GTATAC 1 cut(s) 502
BsuRI GGCC 4 cut(s) 287, 425, 840, 1256
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 1419
BtsI GCAGTG 1 cut(s) 1295
BtsIMutI CAGTG 5 cut(s) 228, 1295, 1479, 1508, 1562
Cac8I GCNNGC 5 cut(s) 136, 222, 717, 1361, 1368
CciI TCATGA 2 cut(s) 210, 1176
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 106, 285
Csp6I GTAC 2 cut(s) 873, 1336
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 7 cut(s) 135, 190, 211, 598, 679, 685, 1177
CviQI GTAC 2 cut(s) 873, 1336
DdeI CTNAG 8 cut(s) 92, 294, 392, 545, 787, 1201, 1317, 1500
DpnI GATC 7 cut(s) 72, 215, 677, 767, 968, 1425, 1468
DpnII GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
DriI GACNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 705, 1307
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 2 cut(s) 705, 1307
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 3 cut(s) 319, 1332, 1501
Eco32I GATATC 1 cut(s) 1055
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1455
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 840, 1237
EcoRV GATATC 1 cut(s) 1055
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 3 cut(s) 319, 1332, 1501
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 7 cut(s) 138, 193, 214, 601, 682, 688, 1180
FaqI GGGAC 2 cut(s) 1044, 1471
FatI CATG 7 cut(s) 134, 189, 210, 597, 678, 684, 1176
FauI CCCGC 3 cut(s) 643, 1066, 1352
FbaI TGATCA 4 cut(s) 70, 675, 765, 966
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 480, 642, 1364
FokI GGATG 1 cut(s) 1426
FriOI GRGCYC 3 cut(s) 319, 1332, 1501
Fsp4HI GCNGC 3 cut(s) 480, 642, 1364
FspBI CTAG 6 cut(s) 176, 867, 1367, 1379, 1571, 1584
GluI GCNGC 3 cut(s) 480, 642, 1364
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 4 cut(s) 287, 425, 840, 1256
HapII CCGG 1 cut(s) 12
Hin1II CATG 7 cut(s) 138, 193, 214, 601, 682, 688, 1180
HindIII AAGCTT 1 cut(s) 1431
HinfI GANTC 7 cut(s) 126, 440, 454, 549, 727, 749, 812
HpaII CCGG 1 cut(s) 12
HphI GGTGA 8 cut(s) 158, 400, 775, 908, 1052, 1162, 1180, 1613
Hpy166II GTNNAC 3 cut(s) 57, 307, 502
Hpy188I TCNGA 5 cut(s) 297, 707, 796, 1138, 1318
Hpy188III TCNNGA 7 cut(s) 211, 614, 724, 733, 803, 1177, 1427
Hpy8I GTNNAC 3 cut(s) 57, 307, 502
HpyAV CCTTC 3 cut(s) 1195, 1432, 1471
HpyCH4III ACNGT 2 cut(s) 664, 1069
HpyCH4V TGCA 8 cut(s) 116, 200, 701, 719, 906, 983, 1211, 1491
HpyF10VI GCNNNNNNNGC 3 cut(s) 647, 1327, 1439
HpyF3I CTNAG 8 cut(s) 92, 294, 392, 545, 787, 1201, 1317, 1500
Hsp92II CATG 7 cut(s) 138, 193, 214, 601, 682, 688, 1180
Ksp22I TGATCA 4 cut(s) 70, 675, 765, 966
Kzo9I GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
LguI GCTCTTC 2 cut(s) 705, 1307
LmnI GCTCC 3 cut(s) 314, 398, 1480
Lsp1109I GCAGC 3 cut(s) 466, 628, 1375
LweI GCATC 1 cut(s) 1404
MaeI CTAG 6 cut(s) 176, 867, 1367, 1379, 1571, 1584
MaeIII GTNAC 4 cut(s) 151, 226, 322, 1505
MalI GATC 7 cut(s) 72, 215, 677, 767, 968, 1425, 1468
MboI GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
MboII GAAGA 5 cut(s) 91, 722, 938, 1294, 1461
MfeI CAATTG 1 cut(s) 1289
MflI RGATCY 1 cut(s) 1466
MhlI GDGCHC 5 cut(s) 319, 1288, 1332, 1501, 1555
MlsI TGGCCA 1 cut(s) 425
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 2 cut(s) 135, 558
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 2 cut(s) 333, 374
MslI CAYNNNNRTG 5 cut(s) 602, 662, 683, 1079, 1412
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 842, 1239
MunI CAATTG 1 cut(s) 1289
MvaI CCWGG 2 cut(s) 842, 1239
MwoI GCNNNNNNNGC 3 cut(s) 647, 1327, 1439
NdeII GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
NheI GCTAGC 1 cut(s) 1366
NlaIII CATG 7 cut(s) 138, 193, 214, 601, 682, 688, 1180
NlaIV GGNNCC 4 cut(s) 10, 16, 286, 316
NmuCI GTSAC 2 cut(s) 226, 322
NspI RCATGY 1 cut(s) 138
OliI CACNNNNGTG 2 cut(s) 662, 1079
PaeI GCATGC 1 cut(s) 138
PagI TCATGA 2 cut(s) 210, 1176
PciSI GCTCTTC 2 cut(s) 705, 1307
PfeI GAWTC 5 cut(s) 440, 454, 727, 749, 812
PflMI CCANNNNNTGG 1 cut(s) 1238
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 481, 643, 1365
PleI GAGTC 2 cut(s) 134, 557
PpsI GAGTC 2 cut(s) 134, 557
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 840, 1237
PspGI CCWGG 2 cut(s) 840, 1237
PspN4I GGNNCC 4 cut(s) 10, 16, 286, 316
PspPI GGNCC 2 cut(s) 106, 285
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 1 cut(s) 1466
RsaI GTAC 2 cut(s) 874, 1337
RsaNI GTAC 2 cut(s) 873, 1336
RseI CAYNNNNRTG 5 cut(s) 602, 662, 683, 1079, 1412
SapI GCTCTTC 2 cut(s) 705, 1307
SaqAI TTAA 2 cut(s) 333, 374
SatI GCNGC 3 cut(s) 480, 642, 1364
Sau3AI GATC 7 cut(s) 70, 213, 675, 765, 966, 1423, 1466
Sau96I GGNCC 2 cut(s) 106, 285
ScaI AGTACT 2 cut(s) 874, 1337
SchI GAGTC 2 cut(s) 135, 558
ScrFI CCNGG 2 cut(s) 842, 1239
SduI GDGCHC 5 cut(s) 319, 1288, 1332, 1501, 1555
SfaNI GCATC 1 cut(s) 1404
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 5 cut(s) 602, 662, 683, 1079, 1412
SmlI CTYRAG 2 cut(s) 731, 1331
SmoI CTYRAG 2 cut(s) 731, 1331
SphI GCATGC 1 cut(s) 138
SsiI CCGC 4 cut(s) 650, 891, 1059, 1359
SspI AATATT 1 cut(s) 939
SspMI CTAG 6 cut(s) 176, 867, 1367, 1379, 1571, 1584
StyD4I CCNGG 2 cut(s) 840, 1237
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 664, 1069
TaqI TCGA 1 cut(s) 1426
TatI WGTACW 2 cut(s) 872, 1335
TfiI GAWTC 5 cut(s) 440, 454, 727, 749, 812
Tru1I TTAA 2 cut(s) 333, 374
Tru9I TTAA 2 cut(s) 333, 374
TscAI CASTG 5 cut(s) 235, 1302, 1479, 1508, 1569
TseFI GTSAC 2 cut(s) 226, 322
TseI GCWGC 3 cut(s) 479, 641, 1363
Tsp45I GTSAC 2 cut(s) 226, 322
TspDTI ATGAA 6 cut(s) 199, 206, 533, 673, 804, 967
TspRI CASTG 5 cut(s) 235, 1302, 1479, 1508, 1569
Van91I CCANNNNNTGG 1 cut(s) 1238
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 5 cut(s) 193, 298, 337, 414, 798
XceI RCATGY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 6 cut(s) 176, 867, 1367, 1379, 1571, 1584
ZrmI AGTACT 2 cut(s) 874, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.