Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002027

Physical Location & Seq

Genomic Coordinates Forward (+)

20427940 .. 20428748

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1129200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAAAAAGCCGATGGTTCTCCGTTTTTGCTTCGTTGATGGTGATGGCTGGTTCAGGTACAATTTATCTGTTTGGAACCTACTCCAAAGAGCTCAAAACCACTTTTGGCTATGACCAAGAAACCCTCAACTGGATGGGATTTTTCAAAGACCTTGGGGCCAACATCGGCATTTTCGCAGGCTTAATAGCCGAGGTTATGCAAACATGGTTTGTGCTCCTCATTGGGGCGGCCATGAACTTCTTCGGCTACTTCATGATGTGGTTAGGCGTCACGGGAAGGATCGTCAAGCCGGAAATCTGGCAAATCCGTGGTATTATGATCGGCCTCCTCAAAGGGTACATCGGGCTCAGTGGGGCTATCATCACCCAAATTTACCTAGTTTCTTATGGATTTCAGGACAGGCAAGCTCTGATTCTTCTCATCGGTTGTCTCCCAGCTGCATTCTCAGTTGTATTTCTGTGTACGATTCGCCCGATAAAGATCACAGCAACTGCTGAAAATCTACAACTCAAAGTATTTTTTCGCCTTCTTTATGTGTCGATTGTTCTTGCCTTGTTTCTCATGGCAATGACTCTGACTCAGAAATCGGTTGTCTTCCCCCGGGCAGCCCTAGCCGCGACTGCCACGGTGGTTTGCGTCCTGCTTTTGTTTCCTCTCTTGATCACCGTCAGAGAGGATTTTTTTTTTTTTTTTAACAATAATGTCACATCCATTCCAACATTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

244

Amino Acids

27.16

Weight (kDa)

9.45

Isoelectric Point (pI)

18.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	5 - 103	1e-34	Nodulin-like
Nodulin-like	PF06813	104 - 223	3.9e-24	Nodulin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28120
fragaria_vesca	FvH4_3g30820 FvH4_3g30830
malus_domestica	MD03G1126600.v1.1 MD04G1112900.v1.1 MD11G1146900.v1.1 MD11G1147000.v1.1 MD11G1147200.v1.1 MD12G1129200.v1.1
prunus_persica	Prupe.6G110900_v2.0.a1 Prupe.6G111100_v2.0.a1 Prupe.6G111300_v2.0.a1
pyrus_communis	pycom04g10260 pycom04g10300 pycom11g12040
rosa_chinensis	RchiOBHm_Chr5g0056971 RchiOBHm_Chr5g0057001 RchiOBHm_Chr5g0057021
rosa_laevigata	RLG00000035144 RLG00000035145 RLG00000035147
rosa_multiflora	Rmu_sc0002035.1_g000001 Rmu_sc0009185.1_g000006 Rmu_sc0009185.1_g000013
rosa_roxburghii	Rroxscaffold_1G00023150 Rroxscaffold_1G00023190 Rroxscaffold_1G00023200
rosa_rugosa	Rorug05G0305000 Rorug05G0305100 Rorug05G0305200
rosa_samantha	Rh5AG374200 Rh5AG374500 Rh5AG374600 Rh5BG385300 Rh5BG385400 Rh5BG385700 Rh5CG408500 Rh5CG408900 Rh5CG409100 Rh5DG398600 Rh5DG398900 Rh5DG399100
rosa_wichuraiana	Rw5G035230 Rw5G035250 Rw5G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	620
AciI	CCGC	2 cut(s)	230, 618
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	3 cut(s)	61, 341, 466
AfiI	CCNNNNNNNGG	2 cut(s)	132, 226
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	3 cut(s)	94, 410, 440
AluI	AGCT	3 cut(s)	94, 410, 440
Alw21I	GWGCWC	2 cut(s)	96, 219
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	3 cut(s)	159, 231, 325
ApeKI	GCWGC	2 cut(s)	440, 608
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	2 cut(s)	604, 605
AsuHPI	GGTGA	3 cut(s)	55, 358, 658
AvaI	CYCGRG	1 cut(s)	603
BanII	GRGCYC	2 cut(s)	96, 351
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	2 cut(s)	96, 219
BbvI	GCAGC	2 cut(s)	427, 620
BccI	CCATC	4 cut(s)	9, 34, 40, 130
BclI	TGATCA	1 cut(s)	663
BcnI	CCSGG	2 cut(s)	604, 605
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	380, 614
BisI	GCNGC	4 cut(s)	231, 441, 609, 618
BlsI	GCNGC	4 cut(s)	232, 442, 610, 619
Bme1390I	CCNGG	2 cut(s)	604, 605
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	79, 160
BmrFI	CCNGG	2 cut(s)	604, 605
BpiI	GAAGAC	1 cut(s)	589
BpuMI	CCSGG	2 cut(s)	604, 605
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	6 cut(s)	154, 192, 310, 602, 603, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 226
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	576, 722
Bse8I	GATNNNNATC	1 cut(s)	482
BseDI	CCNNGG	6 cut(s)	154, 192, 310, 602, 603, 627
BseGI	GGATG	2 cut(s)	141, 710
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	132, 226
BseMI	GCAATG	2 cut(s)	576, 722
BseMII	CTCAG	3 cut(s)	364, 462, 596
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	209, 320
BseXI	GCAGC	2 cut(s)	427, 620
BseYI	CCCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	3 cut(s)	161, 233, 327
BsiHKAI	GWGCWC	2 cut(s)	96, 219
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	293, 604
BslI	CCNNNNNNNGG	2 cut(s)	132, 226
BsmAI	GTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	161, 233, 327
BsoBI	CYCGRG	1 cut(s)	603
Bsp1286I	GDGCHC	3 cut(s)	96, 219, 351
Bsp143I	GATC	4 cut(s)	282, 321, 483, 663
BspACI	CCGC	2 cut(s)	230, 618
BspANI	GGCC	3 cut(s)	161, 233, 327
BspCNI	CTCAG	3 cut(s)	363, 461, 595
BspFNI	CGCG	1 cut(s)	620
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	79, 160
BspPI	GGATC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	576, 722
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	6 cut(s)	154, 192, 310, 602, 603, 627
BssMI	GATC	4 cut(s)	282, 321, 483, 663
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	631, 670
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	181, 408
BstDEI	CTNAG	3 cut(s)	350, 448, 582
BstDSI	CCRYGG	2 cut(s)	310, 627
BstF5I	GGATG	2 cut(s)	141, 710
BstFNI	CGCG	1 cut(s)	620
BstKTI	GATC	4 cut(s)	285, 324, 486, 666
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	4 cut(s)	282, 321, 483, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 617, 623
BstSCI	CCNGG	2 cut(s)	602, 603
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	427, 620
BstV2I	GAAGAC	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	161, 233, 327
BtgI	CCRYGG	2 cut(s)	310, 627
BtsCI	GGATG	2 cut(s)	141, 710
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	181, 408
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	159
Cfr9I	CCCGGG	1 cut(s)	603
CseI	GACGC	2 cut(s)	259, 628
Csp6I	GTAC	3 cut(s)	60, 340, 465
CviAII	CATG	4 cut(s)	207, 235, 256, 565
CviQI	GTAC	3 cut(s)	60, 340, 465
DdeI	CTNAG	3 cut(s)	350, 448, 582
DpnI	GATC	4 cut(s)	284, 323, 485, 665
DpnII	GATC	4 cut(s)	282, 321, 483, 663
EaeI	YGGCCR	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	96, 351
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	96, 351
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	4 cut(s)	210, 238, 259, 568
FatI	CATG	4 cut(s)	206, 234, 255, 564
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	4 cut(s)	231, 441, 609, 618
FokI	GGATG	2 cut(s)	148, 697
FriOI	GRGCYC	2 cut(s)	96, 351
Fsp4HI	GCNGC	4 cut(s)	231, 441, 609, 618
FspBI	CTAG	2 cut(s)	380, 614
GluI	GCNGC	4 cut(s)	231, 441, 609, 618
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	161, 233, 327
HapII	CCGG	2 cut(s)	293, 604
HgaI	GACGC	2 cut(s)	259, 628
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	210, 238, 259, 568
HinfI	GANTC	4 cut(s)	415, 469, 574, 580
HpaII	CCGG	2 cut(s)	293, 604
HphI	GGTGA	3 cut(s)	55, 358, 658
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	4 cut(s)	414, 579, 585, 674
Hpy188III	TCNNGA	3 cut(s)	256, 398, 661
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	273, 539
HpyCH4III	ACNGT	2 cut(s)	631, 670
HpyCH4V	TGCA	2 cut(s)	202, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 617, 623
HpyF3I	CTNAG	3 cut(s)	350, 448, 582
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	210, 238, 259, 568
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	282, 321, 483, 663
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	427, 620
MaeI	CTAG	2 cut(s)	380, 614
MaeIII	GTNAC	2 cut(s)	271, 706
MalI	GATC	4 cut(s)	284, 323, 485, 665
MboI	GATC	4 cut(s)	282, 321, 483, 663
MboII	GAAGA	3 cut(s)	235, 410, 589
MhlI	GDGCHC	3 cut(s)	96, 219, 351
MluCI	AATT	2 cut(s)	63, 372
MlyI	GAGTC	2 cut(s)	568, 574
MnlI	CCTC	7 cut(s)	137, 187, 230, 338, 341, 666, 670
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	185, 696
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	293, 604
MspR9I	CCNGG	2 cut(s)	604, 605
Mva1269I	GAATGC	1 cut(s)	443
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	614, 617, 623
NciI	CCSGG	2 cut(s)	604, 605
NdeII	GATC	4 cut(s)	282, 321, 483, 663
NlaIII	CATG	4 cut(s)	210, 238, 259, 568
NlaIV	GGNNCC	2 cut(s)	79, 160
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	271, 706
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PctI	GAATGC	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	415, 469
PkrI	GCNGC	4 cut(s)	232, 442, 610, 619
PleI	GAGTC	2 cut(s)	568, 574
PpsI	GAGTC	2 cut(s)	568, 574
Psp124BI	GAGCTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	79, 160
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	61, 341, 466
RsaNI	GTAC	3 cut(s)	60, 340, 465
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	185, 696
SatI	GCNGC	4 cut(s)	231, 441, 609, 618
Sau3AI	GATC	4 cut(s)	282, 321, 483, 663
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	568, 574
ScrFI	CCNGG	2 cut(s)	604, 605
SduI	GDGCHC	3 cut(s)	96, 219, 351
SetI	ASST	8 cut(s)	61, 83, 96, 156, 198, 381, 412, 442
SmaI	CCCGGG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	63, 372
SsiI	CCGC	2 cut(s)	230, 618
SspMI	CTAG	2 cut(s)	380, 614
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	602, 603
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	631, 670
TaqI	TCGA	1 cut(s)	542
TasI	AATT	2 cut(s)	63, 372
TauI	GCSGC	2 cut(s)	233, 620
TfiI	GAWTC	2 cut(s)	415, 469
Tru1I	TTAA	2 cut(s)	185, 696
Tru9I	TTAA	2 cut(s)	185, 696
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	271, 706
TseI	GCWGC	2 cut(s)	440, 608
Tsp45I	GTSAC	2 cut(s)	271, 706
TspDTI	ATGAA	2 cut(s)	244, 251
TspGWI	ACGGA	2 cut(s)	13, 299
TspMI	CCCGGG	1 cut(s)	603
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	372
XmaI	CCCGGG	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	2 cut(s)	380, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.