Rh5BG385400

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
61478819 .. 61481093
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG385400.1

Sequence Viewer

Length: 1698 bp
ATGGCATGCCAATTTGCAGTGCAGGTGATCAAAGGAAGATGGTTCACCGTGTTTGCCTCGTTTCTGATCATGGCTGGAGCCGGTGCTACTTATCTGTTTGGTTCTTATTCCAAAGACATCAAGTCCACTCTTGGCTATGATCAATCAACTCTCAACTTGATTGGCTTCTTCAAGGACCTTGGTGCAAATGTGGGAGTCCTCGCAGGCCTAATAGGTGAAGTAACTCCAACTTGGTTTGTTCTTCTAGTTGGTTCTGCCATGAATTTTGCAGGGTATTTCATGATTTGGCTTGCTGTCACTGGCAAAATAGCCAAACCTAAAGTCTGGCAGATGTGCCTTTACATCTGCGTTGGGGCCAATTCTCAGAATTTTGTAAACACAGGTGCCCTTGTCACTTGTGTCAAGAATTTCCCAGAAAGTAGAGGTGTTATGCTTGGTTTGTTAAAGGGTTATACTGGGCTTAGTGGAGCAATATTCACCCAAATTTACTTGGCTATTTACCCAAACGATTCAAAGTCTTTGATTCTTTTGATTGGTTGGCTTCCTGCTGCTCTTTCAGTCATTTTTGTATACACCATTCGTCCAATGAAAGTTGTTAGGCAACAAAATGAGCTGAGAGTCTTTTACCATTTCCTCTATATCTCACTTTCTCTTGGAGTTTTCCTCATGGTAATGACTCTGCTTGAAAAAACAATCACTTTCTCTCGTGCTGCTTATGCCGGAAGCACCACCGTGGTTTGTATGATCATGTTCATGCCTCTTGGAATTGCAATCAGAGAAGAGCTTGCACTGTGGAATCTCAAGAAACATCCTGTTGATTCTCCAGTTGAGGTGATCAGCATTGATAAAAGACCAAACCCAGTTCCAGAAATTCAAGAACTGGATTCTTTCCCACCCAAATCCTCATTAGGCCAGGAAAAGAAAACACAGATTACTACTACCACTACATCTTGCTGTGGTGATATATGCAATAAGCCAGAAAGAGGGGAAGACTACACAATACTACAAGCACTTTTGAGTACGGATATGATTATTCTATTCATTGCAACTTTTTGTGGGTTGGGGTCAAGTTTGACAGCAGTAGACAATTTGGGTCAGATTGGTGAGTCTCTGGGATATCCCACTAAGACAGTAGGCACTTTTGTGTCATTAGTGAGCATTTGGAATTATTTTGGGAGGGTCTTTTCTGGTTTTGTCTCTGAAAGCCTAATGGTGAAGTGGAAAATCCCCAGAACACTCATGATGACCTTTATGCTTGTTCTATCATGTATTGCATATCTCTCCATTGCTTTCCCATTCCCTGGTTCAGTTTATATGGCTTCGGTTATGATTGGGGTTTCTTTTGGTGCTCAATTGACACTGCTTTTCACAATCATATCTGAGCTGTTTGGGCTCAAGTACTATGCTACATTGTTCAACTGCGGACAGCTAGCGAGTCCTCTCGGGTCTTACATTCTCAATGTGAGGGTCACCGGGATGCTCTATGATCGAGAAGCTTTGAAGGTGTTGGCAAAGAAAGGGATGACAAGATCTTCAGTGAAGGAGCTGGTTTGCATTGGAAGTCAGTGTTATAGGCTGTCTTTTACAATTTTGGCCGGTATCACATTCTTTGGTGCTCTTATTTCACTGGTTTTGGTGATTAGGACTAGAGAGTTCTACAAAGGTGATATATACAAGAAGTATAGAGAAGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

62.37

Weight (kDa)

9.18

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 257 1e-94 Nodulin-like
MFS_1 PF07690 335 - 472 2.6e-06 Major Facilitator Superfamily
NFD4_C PF23262 342 - 553 5.3e-15 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1301
AccI GTMKAC 2 cut(s) 570, 1083
AciI CCGC 1 cut(s) 1422
AcoI YGGCCR 1 cut(s) 1593
AcsI RAATTY 5 cut(s) 262, 367, 406, 483, 870
AcuI CTGAAG 1 cut(s) 1518
AfaI GTAC 2 cut(s) 1021, 1400
AfiI CCNNNNNNNGG 2 cut(s) 983, 1301
AgsI TTSAA 6 cut(s) 172, 513, 686, 875, 1417, 1501
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 912, 1300
AleI CACNNNNGTG 2 cut(s) 731, 1142
AluBI AGCT 6 cut(s) 613, 784, 1384, 1429, 1496, 1546
AluI AGCT 6 cut(s) 613, 784, 1384, 1429, 1496, 1546
Alw21I GWGCWC 2 cut(s) 1351, 1618
Alw26I GTCTC 2 cut(s) 1113, 1201
Ama87I CYCGRG 1 cut(s) 1442
AoxI GGCC 4 cut(s) 205, 354, 910, 1593
ApeKI GCWGC 2 cut(s) 548, 710
ApoI RAATTY 5 cut(s) 262, 367, 406, 483, 870
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AspS9I GGNCC 2 cut(s) 175, 354
AsuC2I CCSGG 1 cut(s) 1474
AsuNHI GCTAGC 1 cut(s) 1429
AvaI CYCGRG 1 cut(s) 1442
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 1395
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 2 cut(s) 1351, 1618
BbvI GCAGC 2 cut(s) 535, 697
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 914, 1302
BclI TGATCA 5 cut(s) 27, 66, 139, 744, 834
BcnI CCSGG 1 cut(s) 1474
BcoDI GTCTC 2 cut(s) 1113, 1201
BfaI CTAG 3 cut(s) 245, 1430, 1647
BfuAI ACCTGC 1 cut(s) 13
BglII AGATCT 1 cut(s) 1529
BisI GCNGC 2 cut(s) 549, 711
BlsI GCNGC 2 cut(s) 550, 712
BmcAI AGTACT 1 cut(s) 1400
Bme1390I CCNGG 3 cut(s) 914, 1302, 1474
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 1442
BmgT120I GGNCC 2 cut(s) 175, 354
BmiI GGNNCC 3 cut(s) 79, 355, 385
BmrFI CCNGG 3 cut(s) 914, 1302, 1474
BmrI ACTGGG 2 cut(s) 465, 854
BmsI GCATC 1 cut(s) 1467
BmtI GCTAGC 1 cut(s) 1433
BmuI ACTGGG 2 cut(s) 465, 854
BpiI GAAGAC 1 cut(s) 996
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 2 cut(s) 96, 807
BpuEI CTTGAG 2 cut(s) 785, 1379
BpuMI CCSGG 1 cut(s) 1474
BsaJI CCNNGG 3 cut(s) 178, 732, 1300
Bsc4I CCNNNNNNNGG 2 cut(s) 983, 1301
Bse118I RCCGGY 2 cut(s) 80, 1595
Bse1I ACTGG 6 cut(s) 304, 460, 824, 860, 885, 1632
Bse3DI GCAATG 2 cut(s) 1041, 1284
BseBI CCWGG 2 cut(s) 914, 1302
BseDI CCNNGG 3 cut(s) 178, 732, 1300
BseGI GGATG 3 cut(s) 808, 1482, 1527
BseLI CCNNNNNNNGG 2 cut(s) 983, 1301
BseMI GCAATG 2 cut(s) 1041, 1284
BseMII CTCAG 3 cut(s) 377, 605, 1371
BseNI ACTGG 6 cut(s) 304, 460, 824, 860, 885, 1632
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 535, 697
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 4 cut(s) 207, 356, 912, 1595
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 1351, 1618
BsiHKCI CYCGRG 1 cut(s) 1442
BsiSI CCGG 4 cut(s) 81, 720, 1473, 1596
BslI CCNNNNNNNGG 2 cut(s) 983, 1301
BsmAI GTCTC 2 cut(s) 1113, 1201
BsnI GGCC 4 cut(s) 207, 356, 912, 1595
BsoBI CYCGRG 1 cut(s) 1442
Bsp1286I GDGCHC 4 cut(s) 388, 1351, 1395, 1618
Bsp143I GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
BspACI CCGC 1 cut(s) 1422
BspANI GGCC 4 cut(s) 207, 356, 912, 1595
BspCNI CTCAG 3 cut(s) 376, 606, 1372
BspHI TCATGA 2 cut(s) 279, 1239
BspLI GGNNCC 3 cut(s) 79, 355, 385
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 1433
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 1041, 1284
BsrFI RCCGGY 2 cut(s) 80, 1595
BsrI ACTGG 6 cut(s) 304, 460, 824, 860, 885, 1632
BssAI RCCGGY 2 cut(s) 80, 1595
BssECI CCNNGG 3 cut(s) 178, 732, 1300
BssMI GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
BssNAI GTATAC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 571
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 914, 1302
Bst4CI ACNGT 4 cut(s) 49, 733, 792, 1132
Bst6I CTCTTC 1 cut(s) 774
BstC8I GCNNGC 5 cut(s) 7, 205, 291, 786, 1431
BstDEI CTNAG 5 cut(s) 363, 461, 614, 1125, 1380
BstDSI CCRYGG 1 cut(s) 732
BstEII GGTNACC 1 cut(s) 1468
BstF5I GGATG 3 cut(s) 808, 1482, 1527
BstKTI GATC 7 cut(s) 30, 69, 142, 747, 837, 1489, 1532
BstMAI GTCTC 2 cut(s) 1113, 1201
BstMBI GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
BstMWI GCNNNNNNNGC 2 cut(s) 716, 1390
BstNI CCWGG 2 cut(s) 914, 1302
BstNSI RCATGY 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 1468
BstSCI CCNGG 3 cut(s) 912, 1300, 1472
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 535, 697
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 1 cut(s) 1529
BstYI RGATCY 1 cut(s) 1529
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 4 cut(s) 207, 356, 912, 1595
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 3 cut(s) 808, 1482, 1527
BtsI GCAGTG 2 cut(s) 24, 1358
BtsIMutI CAGTG 7 cut(s) 24, 297, 788, 1358, 1542, 1571, 1625
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 5 cut(s) 7, 205, 291, 786, 1431
CciI TCATGA 2 cut(s) 279, 1239
Cfr10I RCCGGY 2 cut(s) 80, 1595
Cfr13I GGNCC 2 cut(s) 175, 354
Csp6I GTAC 2 cut(s) 1020, 1399
CviAII CATG 9 cut(s) 6, 70, 259, 280, 667, 748, 754, 1240, 1266
CviQI GTAC 2 cut(s) 1020, 1399
DdeI CTNAG 5 cut(s) 363, 461, 614, 1125, 1380
DpnI GATC 7 cut(s) 29, 68, 141, 746, 836, 1488, 1531
DpnII GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 1593
Eam1104I CTCTTC 1 cut(s) 774
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 774
Eco130I CCWWGG 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 1395
Eco32I GATATC 1 cut(s) 1118
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 1518
Eco88I CYCGRG 1 cut(s) 1442
Eco91I GGTNACC 1 cut(s) 1468
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 1468
EcoRII CCWGG 2 cut(s) 912, 1300
EcoRV GATATC 1 cut(s) 1118
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 1395
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 9 cut(s) 9, 73, 262, 283, 670, 751, 757, 1243, 1269
FatI CATG 9 cut(s) 5, 69, 258, 279, 666, 747, 753, 1239, 1265
FbaI TGATCA 5 cut(s) 27, 66, 139, 744, 834
FblI GTMKAC 2 cut(s) 570, 1083
Fnu4HI GCNGC 2 cut(s) 549, 711
FokI GGATG 3 cut(s) 795, 1489, 1534
FriOI GRGCYC 1 cut(s) 1395
Fsp4HI GCNGC 2 cut(s) 549, 711
FspBI CTAG 3 cut(s) 245, 1430, 1647
GluI GCNGC 2 cut(s) 549, 711
GsuI CTGGAG 2 cut(s) 96, 807
HaeIII GGCC 4 cut(s) 207, 356, 912, 1595
HapII CCGG 4 cut(s) 81, 720, 1473, 1596
Hin1II CATG 9 cut(s) 9, 73, 262, 283, 670, 751, 757, 1243, 1269
HindIII AAGCTT 1 cut(s) 1494
HpaII CCGG 4 cut(s) 81, 720, 1473, 1596
Hpy166II GTNNAC 5 cut(s) 45, 126, 376, 571, 1084
Hpy188I TCNGA 6 cut(s) 66, 366, 776, 1098, 1201, 1381
Hpy188III TCNNGA 7 cut(s) 280, 403, 802, 866, 875, 1240, 1490
Hpy8I GTNNAC 5 cut(s) 45, 126, 376, 571, 1084
HpyAV CCTTC 2 cut(s) 1495, 1534
HpyCH4III ACNGT 4 cut(s) 49, 733, 792, 1132
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 1390
HpyF3I CTNAG 5 cut(s) 363, 461, 614, 1125, 1380
Hsp92II CATG 9 cut(s) 9, 73, 262, 283, 670, 751, 757, 1243, 1269
Ksp22I TGATCA 5 cut(s) 27, 66, 139, 744, 834
Kzo9I GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 3 cut(s) 77, 467, 1543
Lsp1109I GCAGC 2 cut(s) 535, 697
LweI GCATC 1 cut(s) 1467
MaeI CTAG 3 cut(s) 245, 1430, 1647
MaeIII GTNAC 4 cut(s) 220, 295, 391, 1468
MalI GATC 7 cut(s) 29, 68, 141, 746, 836, 1488, 1531
MboI GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
MboII GAAGA 6 cut(s) 48, 160, 233, 791, 1001, 1524
MfeI CAATTG 1 cut(s) 1352
MflI RGATCY 1 cut(s) 1529
MhlI GDGCHC 4 cut(s) 388, 1351, 1395, 1618
MlyI GAGTC 5 cut(s) 204, 627, 670, 1115, 1444
MmeI TCCRAC 1 cut(s) 251
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1142, 1475
MspI CCGG 4 cut(s) 81, 720, 1473, 1596
MspR9I CCNGG 3 cut(s) 914, 1302, 1474
MunI CAATTG 1 cut(s) 1352
MvaI CCWGG 2 cut(s) 914, 1302
MwoI GCNNNNNNNGC 2 cut(s) 716, 1390
NciI CCSGG 1 cut(s) 1474
NdeII GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
NheI GCTAGC 1 cut(s) 1429
NlaIII CATG 9 cut(s) 9, 73, 262, 283, 670, 751, 757, 1243, 1269
NlaIV GGNNCC 3 cut(s) 79, 355, 385
NmuCI GTSAC 3 cut(s) 295, 391, 1468
NspI RCATGY 1 cut(s) 9
OliI CACNNNNGTG 2 cut(s) 731, 1142
PaeI GCATGC 1 cut(s) 9
PagI TCATGA 2 cut(s) 279, 1239
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 774
PfeI GAWTC 5 cut(s) 509, 523, 796, 818, 884
PflMI CCANNNNNTGG 1 cut(s) 1301
PkrI GCNGC 2 cut(s) 550, 712
PleI GAGTC 5 cut(s) 203, 626, 670, 1114, 1443
PpsI GAGTC 5 cut(s) 203, 626, 670, 1114, 1443
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 912, 1300
PspEI GGTNACC 1 cut(s) 1468
PspGI CCWGG 2 cut(s) 912, 1300
PspN4I GGNNCC 3 cut(s) 79, 355, 385
PspPI GGNCC 2 cut(s) 175, 354
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 1 cut(s) 1529
RsaI GTAC 2 cut(s) 1021, 1400
RsaNI GTAC 2 cut(s) 1020, 1399
RseI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1142, 1475
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 2 cut(s) 549, 711
Sau3AI GATC 7 cut(s) 27, 66, 139, 744, 834, 1486, 1529
Sau96I GGNCC 2 cut(s) 175, 354
ScaI AGTACT 1 cut(s) 1400
SchI GAGTC 5 cut(s) 204, 627, 670, 1115, 1444
ScrFI CCNGG 3 cut(s) 914, 1302, 1474
SduI GDGCHC 4 cut(s) 388, 1351, 1395, 1618
SfaNI GCATC 1 cut(s) 1467
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1142, 1475
SmlI CTYRAG 2 cut(s) 800, 1394
SmoI CTYRAG 2 cut(s) 800, 1394
SphI GCATGC 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 1422
SspI AATATT 1 cut(s) 474
SspMI CTAG 3 cut(s) 245, 1430, 1647
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 912, 1300, 1472
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 4 cut(s) 49, 733, 792, 1132
TaqI TCGA 1 cut(s) 1489
TatI WGTACW 1 cut(s) 1398
TfiI GAWTC 5 cut(s) 509, 523, 796, 818, 884
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 7 cut(s) 24, 304, 795, 1365, 1542, 1571, 1632
TseFI GTSAC 3 cut(s) 295, 391, 1468
TseI GCWGC 2 cut(s) 548, 710
Tsp45I GTSAC 3 cut(s) 295, 391, 1468
TspDTI ATGAA 5 cut(s) 268, 275, 602, 742, 1030
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 7 cut(s) 24, 304, 795, 1365, 1542, 1571, 1632
Van91I CCANNNNNTGG 1 cut(s) 1301
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 5 cut(s) 262, 367, 406, 483, 870
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 2 cut(s) 570, 1083
XspI CTAG 3 cut(s) 245, 1430, 1647
ZrmI AGTACT 1 cut(s) 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.