Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002027

Physical Location & Seq

Genomic Coordinates Reverse (-)

19836987 .. 19837690

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1112900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGATGTCTGATTTAGGTACAATTTATCTGTTTGGAACCTATTCCAAAGAGCTCAAAACCACCTTTGGCTATGACCAAGAAACCCTCAACCTGCTGGGGTTCTTCAAGAACCTTGGGGCCAACATCGGCATTTTCGCAGGCTTAATAGCGGAGGTAACAACGACGTGGTTTGAGCTCCTCAATGGTGCGGCCACGAACTTCTTCGGCTACTTCACGATGTGGTTAGGAGTCACGGGAAAGATCGCGAAGCCGGAAATCTGGCACATGTGTGTTATGGTTACTTGCGTCAAAAACTTCCCACAAAGCCGCGGCATCATGATCTGCCTCCTCAAAGGGTACATCGGCCTCAGTGGGGCGATCATCACCCAAATATATCTAGCATTGTATGGATTTCAAGACCAGAGAGCTCTAATTCTTCTCATCGGTTGGCTCCCAGCTGCAATCTCAGTTGTGTTTCTGTGCACGATTCGTCCGATAAAAATCACAGCAGCTGCTAAAAATCAACAGCAAAAACGACAACTCAAAAGTGTTTTATCGCTTTCTGTACGTGTCGATTGTTCTTGCCTTGTTTCTCATGGCAATAACTCTGACTCAGAAATTGGTTGTCTTCCCCCGGGCAGCCCAAGCTACGACTGCTGGTGTGCTTCCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

8.51

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	2 - 94	1.1e-30	Nodulin-like
Nodulin-like	PF06813	92 - 191	4.4e-24	Nodulin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28120
fragaria_vesca	FvH4_3g30820 FvH4_3g30830
malus_domestica	MD03G1126600.v1.1 MD04G1112900.v1.1 MD11G1146900.v1.1 MD11G1147000.v1.1 MD11G1147200.v1.1 MD12G1129200.v1.1
prunus_persica	Prupe.6G110900_v2.0.a1 Prupe.6G111100_v2.0.a1 Prupe.6G111300_v2.0.a1
pyrus_communis	pycom04g10260 pycom04g10300 pycom11g12040
rosa_chinensis	RchiOBHm_Chr5g0056971 RchiOBHm_Chr5g0057001 RchiOBHm_Chr5g0057021
rosa_laevigata	RLG00000035144 RLG00000035145 RLG00000035147
rosa_multiflora	Rmu_sc0002035.1_g000001 Rmu_sc0009185.1_g000006 Rmu_sc0009185.1_g000013
rosa_roxburghii	Rroxscaffold_1G00023150 Rroxscaffold_1G00023190 Rroxscaffold_1G00023200
rosa_rugosa	Rorug05G0305000 Rorug05G0305100 Rorug05G0305200
rosa_samantha	Rh5AG374200 Rh5AG374500 Rh5AG374600 Rh5BG385300 Rh5BG385400 Rh5BG385700 Rh5CG408500 Rh5CG408900 Rh5CG409100 Rh5DG398600 Rh5DG398900 Rh5DG399100
rosa_wichuraiana	Rw5G035230 Rw5G035250 Rw5G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccII	CGCG	2 cut(s)	248, 312
AciI	CCGC	4 cut(s)	152, 191, 310, 312
AcoI	YGGCCR	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	22, 341, 549
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	2 cut(s)	267, 550
AgsI	TTSAA	2 cut(s)	109, 398
AjiI	CACGTC	1 cut(s)	168
AleI	CACNNNNGTG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	55, 178, 410, 440, 494, 630
AluI	AGCT	6 cut(s)	55, 178, 410, 440, 494, 630
Alw21I	GWGCWC	4 cut(s)	57, 180, 412, 467
Alw44I	GTGCAC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	3 cut(s)	120, 192, 346
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	4 cut(s)	440, 491, 494, 621
Asp700I	GAANNNNTTC	2 cut(s)	43, 203
AspS9I	GGNCC	1 cut(s)	120
AsuC2I	CCSGG	2 cut(s)	617, 618
AsuHPI	GGTGA	2 cut(s)	16, 358
AvaI	CYCGRG	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	467
BanII	GRGCYC	3 cut(s)	57, 180, 412
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	4 cut(s)	57, 180, 412, 467
BbvI	GCAGC	4 cut(s)	427, 481, 503, 633
BcnI	CCSGG	2 cut(s)	617, 618
BfaI	CTAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	7 cut(s)	192, 310, 313, 441, 492, 495, 622
BlsI	GCNGC	7 cut(s)	193, 311, 314, 442, 493, 496, 623
Bme1390I	CCNGG	2 cut(s)	617, 618
BmeT110I	CYCGRG	1 cut(s)	616
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	40, 121, 434
BmrFI	CCNGG	2 cut(s)	617, 618
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	617, 618
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	115, 310, 615, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	482
BseDI	CCNNGG	4 cut(s)	115, 310, 615, 616
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	364, 462, 609
BseRI	GAGGAG	2 cut(s)	170, 320
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	4 cut(s)	427, 481, 503, 633
BseYI	CCCAGC	2 cut(s)	97, 436
Bsh1236I	CGCG	2 cut(s)	248, 312
BshFI	GGCC	3 cut(s)	122, 194, 348
BsiHKAI	GWGCWC	4 cut(s)	57, 180, 412, 467
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	2 cut(s)	254, 617
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	3 cut(s)	122, 194, 348
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	4 cut(s)	57, 180, 412, 467
Bsp143I	GATC	3 cut(s)	243, 321, 360
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	4 cut(s)	152, 191, 310, 312
BspANI	GGCC	3 cut(s)	122, 194, 348
BspCNI	CTCAG	3 cut(s)	363, 461, 608
BspFNI	CGCG	2 cut(s)	248, 312
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	3 cut(s)	40, 121, 434
BspMI	ACCTGC	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	115, 310, 615, 616
BssMI	GATC	3 cut(s)	243, 321, 360
BssT1I	CCWWGG	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	350, 448, 595
BstDSI	CCRYGG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	248, 312
BstKTI	GATC	3 cut(s)	246, 324, 363
BstMBI	GATC	3 cut(s)	243, 321, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	627, 636
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	615, 616
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	2 cut(s)	248, 312
BstV1I	GCAGC	4 cut(s)	427, 481, 503, 633
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	122, 194, 348
BtgI	CCRYGG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	358
BtuMI	TCGCGA	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	120
Cfr42I	CCGCGG	1 cut(s)	313
Cfr9I	CCCGGG	1 cut(s)	616
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	21, 340, 548
CviAII	CATG	3 cut(s)	268, 319, 578
CviQI	GTAC	3 cut(s)	21, 340, 548
DdeI	CTNAG	3 cut(s)	350, 448, 595
DpnI	GATC	3 cut(s)	245, 323, 362
DpnII	GATC	3 cut(s)	243, 321, 360
DraIII	CACNNNGTG	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	192
Ecl136II	GAGCTC	3 cut(s)	55, 178, 410
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	3 cut(s)	57, 180, 412
Eco53kI	GAGCTC	3 cut(s)	55, 178, 410
Eco88I	CYCGRG	1 cut(s)	616
EcoICRI	GAGCTC	3 cut(s)	55, 178, 410
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	3 cut(s)	57, 180, 412
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	271, 322, 581
FaiI	YATR	7 cut(s)	75, 269, 278, 320, 376, 390, 579
FatI	CATG	3 cut(s)	267, 318, 577
Fnu4HI	GCNGC	7 cut(s)	192, 310, 313, 441, 492, 495, 622
FriOI	GRGCYC	3 cut(s)	57, 180, 412
Fsp4HI	GCNGC	7 cut(s)	192, 310, 313, 441, 492, 495, 622
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	7 cut(s)	192, 310, 313, 441, 492, 495, 622
GsaI	CCCAGC	2 cut(s)	101, 440
HaeIII	GGCC	3 cut(s)	122, 194, 348
HapII	CCGG	2 cut(s)	254, 617
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	3 cut(s)	271, 322, 581
HinfI	GANTC	3 cut(s)	231, 469, 593
HpaII	CCGG	2 cut(s)	254, 617
HphI	GGTGA	2 cut(s)	16, 358
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	4 cut(s)	13, 477, 592, 598
Hpy188III	TCNNGA	5 cut(s)	109, 217, 247, 319, 398
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	167, 550
HpyCH4V	TGCA	2 cut(s)	443, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	627, 636
HpyF3I	CTNAG	3 cut(s)	350, 448, 595
HpySE526I	ACGT	2 cut(s)	167, 550
Hsp92II	CATG	3 cut(s)	271, 322, 581
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	243, 321, 360
LmnI	GCTCC	2 cut(s)	183, 438
LpnPI	CCDG	9 cut(s)	83, 107, 126, 247, 267, 416, 450, 625, 630
Lsp1109I	GCAGC	4 cut(s)	427, 481, 503, 633
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	2 cut(s)	167, 550
MaeIII	GTNAC	3 cut(s)	157, 232, 280
MalI	GATC	3 cut(s)	245, 323, 362
MboI	GATC	3 cut(s)	243, 321, 360
MboII	GAAGA	4 cut(s)	97, 196, 410, 602
MhlI	GDGCHC	4 cut(s)	57, 180, 412, 467
MluCI	AATT	3 cut(s)	24, 414, 600
MlyI	GAGTC	2 cut(s)	240, 587
MnlI	CCTC	6 cut(s)	98, 148, 191, 338, 341, 359
MroXI	GAANNNNTTC	2 cut(s)	43, 203
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	3 cut(s)	312, 440, 494
MspI	CCGG	2 cut(s)	254, 617
MspR9I	CCNGG	2 cut(s)	617, 618
MvnI	CGCG	2 cut(s)	248, 312
MwoI	GCNNNNNNNGC	2 cut(s)	627, 636
NciI	CCSGG	2 cut(s)	617, 618
NdeII	GATC	3 cut(s)	243, 321, 360
NlaIII	CATG	3 cut(s)	271, 322, 581
NlaIV	GGNNCC	3 cut(s)	40, 121, 434
NmuCI	GTSAC	1 cut(s)	232
NruI	TCGCGA	1 cut(s)	248
NspI	RCATGY	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	318
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	43, 203
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	7 cut(s)	193, 311, 314, 442, 493, 496, 623
PleI	GAGTC	2 cut(s)	239, 587
PpsI	GAGTC	2 cut(s)	239, 587
Ppu21I	YACGTR	1 cut(s)	551
PscI	ACATGT	1 cut(s)	267
Psp124BI	GAGCTC	3 cut(s)	57, 180, 412
PspFI	CCCAGC	2 cut(s)	97, 436
PspN4I	GGNNCC	3 cut(s)	40, 121, 434
PspPI	GGNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	494
PvuII	CAGCTG	2 cut(s)	440, 494
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	3 cut(s)	22, 341, 549
RsaNI	GTAC	3 cut(s)	21, 340, 548
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	3 cut(s)	57, 180, 412
SacII	CCGCGG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	7 cut(s)	192, 310, 313, 441, 492, 495, 622
Sau3AI	GATC	3 cut(s)	243, 321, 360
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	240, 587
ScrFI	CCNGG	2 cut(s)	617, 618
SduI	GDGCHC	4 cut(s)	57, 180, 412, 467
SfaNI	GCATC	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SmaI	CCCGGG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	24, 414, 600
SsiI	CCGC	4 cut(s)	152, 191, 310, 312
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	3 cut(s)	57, 180, 412
StyD4I	CCNGG	2 cut(s)	615, 616
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	2 cut(s)	170, 553
TaqI	TCGA	1 cut(s)	555
TasI	AATT	3 cut(s)	24, 414, 600
TauI	GCSGC	3 cut(s)	194, 312, 315
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	440, 491, 494, 621
Tsp45I	GTSAC	1 cut(s)	232
TspMI	CCCGGG	1 cut(s)	616
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	463
XceI	RCATGY	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	616
XmnI	GAANNNNTTC	2 cut(s)	43, 203
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.