Rw5G035230

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
60851613 .. 60853516
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035230.1

Sequence Viewer

Length: 1707 bp
ATGACCAGTTCTAAGGGCGGTAACGGTGGGATGGGAGGCGGGGACTTCCTTGGATTCTCAGTGCATGTGATCACTGGAAGATGGTTCAGCGTTTTCGCTTCCTTCCTCATTATGGCCGGAGCTGGTGCTACATATCTCTACGGTACATATTCCAAAGAGATCAAGGCCTCTCTTGGCTATGACCAAGAAGACATCAACTTGTTAGGTTTCGCCAAAGATTTTGGTGCAAATGTTGGAGTTCTGTCGGGACTAATTGGAGAAGTAACCCCCGTTTGGTTTGTGCTCCTGATCGGAGCAGCCATGAATTTTGTGGGCTACTTTATGATTTGGCTGGCCGTCACTGGAAAAATTGCCAAGCCTAAGGTTTGGCAGATGTGTCTGTACATATGCCTTGGAGCTAACTCTCAAAATTTCGCAAACACTGGAGCTCTTGTCACCTGTGTCAAGAACTTCCCAGAAAGCCGAGGTGTCATGCTTGGTTTACTCAAGGGCTTCGTTGGGCTCAGTGGAGCTATCTTGACACAGCTTTACTTAGCCATCTACGGAAACGATGCGAAATCGTTGATTCTACTTATTGCGTGGCTCCCGGCCGCGATTTCAGTAGTTTTTGTGTACACAATTCGTCCAATGAAAGTTATTAGGCAACCGAACGAGCTCAATGTGTTTTACCACTTCCTCTACATGTCTGTTTTACTTGCGTTGTTCCTCATGACCATAAGTCTACTCCAAAGATGGTTTAATTTCTCCCACGCCGCCTATGCTGGCAGTGCTACCGCGGCTGTTTTGTTGCTGTTTTTCCCTCTTGGAATTGCCATTAGAGAAGAGCTAGTGCTGTGGAAGCAAATGAAACGACCTATTGATCCTCCTATTGAGGTTAGAGTAGAGAAAACACAAGAAATTAAACAAGAGAAAAAAGAGGAAAAAGACGATACAGCTTGTTTTGCTAACATATGCAATAAACCTCCAAGAGGTGAAGACTACACCATTTTACAAGCACTCCTAAGTTTGGACATGATCATTTTGTTCATTGCAACGTTATGCGGACTCGGCTCTAGCCTGACCGCGGTAGACAACTTTGGGCAAATCGGTGAGTCGCTTGGATATCCAACTAAAACAGTGAAAACTTTTGTGTCATTAGTTAGCATCTGGAATTACTTTGGCAGAGTCTTTTCAGGGTTTTTCTCCGAAAGCCTGCTAGTGAGATACAAAATTCCCCGTCCCTTAGTGATGACATTTTCTCTCCTCTTATCATGCGTTGGCCTCCTTCTCATCGCCTTTCCCACCCCCGGTTCGCTCTACCTGGCATCAATAATCATCGGGTTTTCGTTTGGGGCTCAATTGCCATTGCTATTCGCAATAATTTCCGAGCTCTTTGGACTCAAGCATTTTTCCACTTTGTTCAATTGTGGGCAAATAGCGAGTCCTTTGGGGTCTTATCTTCTAAATGTGCAGCTCACTGGAAAGCTTTACGATCAAGAGGCGAAGAAAGAGCTAGCGAAGAGAGGATTGACTAGGTCACAAGTGAAGGAGCTGACTTGCCTCGGAAAACATTGTTATTGGTTGTCTTTTACAATTTTAGCTGCGGTTACGTTCTTCGGTGCTCTTAGTTCACTGGTTTTGGTGTATAGGACAAGAGATTTCTACAAAAGTGACATATATAAGAAGTATAGGGAGGAAGCAGAAACTATTGGTGAAAACAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

62.71

Weight (kDa)

9.05

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 27 - 271 2.6e-93 Nodulin-like
NFD4_C PF23262 336 - 548 1.6e-14 NFD4, C-terminal domain
MFS_1 PF07690 341 - 490 6.2e-06 Major Facilitator Superfamily
MFS_1 PF07690 342 - 464 4.4e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 721, 1068
AccII CGCG 3 cut(s) 593, 776, 1064
AclI AACGTT 1 cut(s) 1034
AclWI GGATC 1 cut(s) 854
AcoI YGGCCR 3 cut(s) 114, 333, 588
AcsI RAATTY 3 cut(s) 304, 409, 1209
AfaI GTAC 3 cut(s) 145, 383, 614
AfiI CCNNNNNNNGG 6 cut(s) 112, 273, 968, 1006, 1063, 1286
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 1 cut(s) 1402
AhdI GACNNNNNGTC 1 cut(s) 717
AjnI CCWGG 1 cut(s) 1299
Alw21I GWGCWC 5 cut(s) 285, 430, 657, 1371, 1603
AlwI GGATC 1 cut(s) 854
AoxI GGCC 5 cut(s) 114, 165, 333, 588, 1258
ApeKI GCWGC 3 cut(s) 296, 1450, 1580
ApoI RAATTY 3 cut(s) 304, 409, 1209
ArsI GACNNNNNNTTYG 2 cut(s) 1405, 1437
AsuC2I CCSGG 2 cut(s) 587, 1287
AsuHPI GGTGA 4 cut(s) 427, 983, 1100, 1703
AsuNHI GCTAGC 1 cut(s) 1492
AxyI CCTNAGG 1 cut(s) 360
BanII GRGCYC 5 cut(s) 430, 504, 657, 1336, 1371
BbsI GAAGAC 2 cut(s) 195, 981
Bbv12I GWGCWC 5 cut(s) 285, 430, 657, 1371, 1603
BbvI GCAGC 3 cut(s) 308, 1462, 1567
BccI CCATC 4 cut(s) 25, 75, 545, 726
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 1301
BclI TGATCA 2 cut(s) 69, 1014
BcnI CCSGG 2 cut(s) 587, 1287
BfaI CTAG 6 cut(s) 827, 1053, 1196, 1493, 1512, 1705
BisI GCNGC 6 cut(s) 297, 591, 753, 777, 1451, 1581
BlsI GCNGC 6 cut(s) 298, 592, 754, 778, 1452, 1582
Bme1390I CCNGG 3 cut(s) 587, 1287, 1301
BmeRI GACNNNNNGTC 1 cut(s) 717
BmiI GGNNCC 1 cut(s) 584
BmrFI CCNGG 3 cut(s) 587, 1287, 1301
BmsI GCATC 3 cut(s) 541, 1152, 1313
BmtI GCTAGC 1 cut(s) 1496
BpiI GAAGAC 2 cut(s) 195, 981
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 470, 1364
BpuMI CCSGG 2 cut(s) 587, 1287
BsaJI CCNNGG 7 cut(s) 49, 391, 463, 774, 1062, 1285, 1540
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 981, 1011
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 273, 968, 1006, 1063, 1286
Bse1I ACTGG 6 cut(s) 6, 79, 346, 427, 1462, 1617
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 2 cut(s) 1026, 1343
BseBI CCWGG 1 cut(s) 1301
BseDI CCNNGG 7 cut(s) 49, 391, 463, 774, 1062, 1285, 1540
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 6 cut(s) 112, 273, 968, 1006, 1063, 1286
BseMI GCAATG 2 cut(s) 1026, 1343
BseMII CTCAG 2 cut(s) 72, 517
BseNI ACTGG 6 cut(s) 6, 79, 346, 427, 1462, 1617
BseRI GAGGAG 1 cut(s) 1232
BseX3I CGGCCG 1 cut(s) 588
BseXI GCAGC 3 cut(s) 308, 1462, 1567
BsgI GTGCAG 1 cut(s) 1469
Bsh1236I CGCG 3 cut(s) 593, 776, 1064
Bsh1285I CGRYCG 1 cut(s) 591
BshFI GGCC 5 cut(s) 116, 167, 335, 590, 1260
BsiEI CGRYCG 1 cut(s) 591
BsiHKAI GWGCWC 5 cut(s) 285, 430, 657, 1371, 1603
BsiSI CCGG 3 cut(s) 117, 587, 1287
BslFI GGGAC 3 cut(s) 56, 261, 1203
BslI CCNNNNNNNGG 6 cut(s) 112, 273, 968, 1006, 1063, 1286
BsmFI GGGAC 3 cut(s) 56, 261, 1203
BsnI GGCC 5 cut(s) 116, 167, 335, 590, 1260
Bsp1286I GDGCHC 7 cut(s) 285, 430, 504, 657, 1336, 1371, 1603
Bsp1407I TGTACA 2 cut(s) 381, 612
Bsp143I GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
BspANI GGCC 5 cut(s) 116, 167, 335, 590, 1260
BspCNI CTCAG 2 cut(s) 71, 516
BspFNI CGCG 3 cut(s) 593, 776, 1064
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 584
BspOI GCTAGC 1 cut(s) 1496
BspPI GGATC 1 cut(s) 854
BspQI GCTCTTC 1 cut(s) 816
BsrDI GCAATG 2 cut(s) 1026, 1343
BsrGI TGTACA 2 cut(s) 381, 612
BsrI ACTGG 6 cut(s) 6, 79, 346, 427, 1462, 1617
BssECI CCNNGG 7 cut(s) 49, 391, 463, 774, 1062, 1285, 1540
BssMI GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
BssT1I CCWWGG 2 cut(s) 49, 391
Bst2UI CCWGG 1 cut(s) 1301
Bst4CI ACNGT 3 cut(s) 26, 143, 1117
Bst6I CTCTTC 2 cut(s) 816, 1493
BstAUI TGTACA 2 cut(s) 381, 612
BstC8I GCNNGC 4 cut(s) 333, 763, 1193, 1494
BstDEI CTNAG 8 cut(s) 12, 58, 360, 503, 532, 1001, 1222, 1604
BstDSI CCRYGG 2 cut(s) 774, 1062
BstENI CCTNNNNNAGG 1 cut(s) 966
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 3 cut(s) 593, 776, 1064
BstKTI GATC 6 cut(s) 72, 162, 291, 862, 1017, 1474
BstMBI GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
BstMCI CGRYCG 1 cut(s) 591
BstMWI GCNNNNNNNGC 6 cut(s) 758, 767, 776, 838, 941, 1047
BstNI CCWGG 1 cut(s) 1301
BstNSI RCATGY 2 cut(s) 68, 685
BstSCI CCNGG 3 cut(s) 585, 1285, 1299
BstUI CGCG 3 cut(s) 593, 776, 1064
BstV1I GCAGC 3 cut(s) 308, 1462, 1567
BstV2I GAAGAC 2 cut(s) 195, 981
BstZI CGGCCG 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 5 cut(s) 116, 167, 335, 590, 1260
BtgI CCRYGG 2 cut(s) 774, 1062
BtgZI GCGATG 1 cut(s) 1255
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 9 cut(s) 66, 72, 339, 420, 511, 772, 1122, 1455, 1610
Cac8I GCNNGC 4 cut(s) 333, 763, 1193, 1494
CciI TCATGA 1 cut(s) 708
Cfr42I CCGCGG 2 cut(s) 777, 1065
Csp6I GTAC 3 cut(s) 144, 382, 613
CviAII CATG 7 cut(s) 65, 301, 472, 682, 709, 1012, 1251
CviQI GTAC 3 cut(s) 144, 382, 613
DdeI CTNAG 8 cut(s) 12, 58, 360, 503, 532, 1001, 1222, 1604
DpnI GATC 6 cut(s) 71, 161, 290, 861, 1016, 1473
DpnII GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
DriI GACNNNNNGTC 1 cut(s) 717
EaeI YGGCCR 3 cut(s) 114, 333, 588
EagI CGGCCG 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 816, 1493
Eam1105I GACNNNNNGTC 1 cut(s) 717
EarI CTCTTC 2 cut(s) 816, 1493
Ecl136II GAGCTC 3 cut(s) 428, 655, 1369
EclXI CGGCCG 1 cut(s) 588
Eco130I CCWWGG 2 cut(s) 49, 391
Eco147I AGGCCT 1 cut(s) 167
Eco24I GRGCYC 5 cut(s) 430, 504, 657, 1336, 1371
Eco32I GATATC 1 cut(s) 1103
Eco52I CGGCCG 1 cut(s) 588
Eco53kI GAGCTC 3 cut(s) 428, 655, 1369
Eco81I CCTNAGG 1 cut(s) 360
EcoICRI GAGCTC 3 cut(s) 428, 655, 1369
EcoNI CCTNNNNNAGG 1 cut(s) 966
EcoRII CCWGG 1 cut(s) 1299
EcoRV GATATC 1 cut(s) 1103
EcoT14I CCWWGG 2 cut(s) 49, 391
EcoT38I GRGCYC 5 cut(s) 430, 504, 657, 1336, 1371
ErhI CCWWGG 2 cut(s) 49, 391
FaeI CATG 7 cut(s) 68, 304, 475, 685, 712, 1015, 1254
FaqI GGGAC 3 cut(s) 56, 261, 1203
FatI CATG 7 cut(s) 64, 300, 471, 681, 708, 1011, 1250
FauI CCCGC 1 cut(s) 32
FauNDI CATATG 2 cut(s) 386, 950
FbaI TGATCA 2 cut(s) 69, 1014
FblI GTMKAC 2 cut(s) 721, 1068
Fnu4HI GCNGC 6 cut(s) 297, 591, 753, 777, 1451, 1581
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 5 cut(s) 430, 504, 657, 1336, 1371
Fsp4HI GCNGC 6 cut(s) 297, 591, 753, 777, 1451, 1581
FspBI CTAG 6 cut(s) 827, 1053, 1196, 1493, 1512, 1705
GluI GCNGC 6 cut(s) 297, 591, 753, 777, 1451, 1581
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 5 cut(s) 116, 167, 335, 590, 1260
HapII CCGG 3 cut(s) 117, 587, 1287
Hin1II CATG 7 cut(s) 68, 304, 475, 685, 712, 1015, 1254
HindIII AAGCTT 1 cut(s) 1463
HinfI GANTC 7 cut(s) 54, 565, 1044, 1091, 1164, 1377, 1420
HpaII CCGG 3 cut(s) 117, 587, 1287
HphI GGTGA 4 cut(s) 427, 983, 1100, 1703
Hpy166II GTNNAC 6 cut(s) 482, 613, 615, 722, 1069, 1610
Hpy188I TCNGA 4 cut(s) 293, 1186, 1366, 1544
Hpy188III TCNNGA 7 cut(s) 246, 286, 445, 517, 709, 1147, 1475
Hpy8I GTNNAC 6 cut(s) 482, 613, 615, 722, 1069, 1610
HpyAV CCTTC 3 cut(s) 112, 1274, 1519
HpyCH4III ACNGT 3 cut(s) 26, 143, 1117
HpyCH4IV ACGT 2 cut(s) 1034, 1589
HpyCH4V TGCA 5 cut(s) 64, 227, 954, 1031, 1450
HpyF10VI GCNNNNNNNGC 6 cut(s) 758, 767, 776, 838, 941, 1047
HpyF3I CTNAG 8 cut(s) 12, 58, 360, 503, 532, 1001, 1222, 1604
HpySE526I ACGT 2 cut(s) 1034, 1589
Hsp92II CATG 7 cut(s) 68, 304, 475, 685, 712, 1015, 1254
Ksp22I TGATCA 2 cut(s) 69, 1014
KspI CCGCGG 2 cut(s) 777, 1065
Kzo9I GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 8 cut(s) 119, 288, 293, 395, 425, 509, 588, 1528
Lsp1109I GCAGC 3 cut(s) 308, 1462, 1567
LweI GCATC 3 cut(s) 541, 1152, 1313
MaeI CTAG 6 cut(s) 827, 1053, 1196, 1493, 1512, 1705
MaeII ACGT 2 cut(s) 1034, 1589
MaeIII GTNAC 7 cut(s) 20, 262, 337, 433, 1515, 1585, 1649
MalI GATC 6 cut(s) 71, 161, 290, 861, 1016, 1473
MboI GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
MboII GAAGA 8 cut(s) 90, 200, 833, 986, 1430, 1495, 1510, 1585
MfeI CAATTG 2 cut(s) 1337, 1402
MhlI GDGCHC 7 cut(s) 285, 430, 504, 657, 1336, 1371, 1603
MlyI GAGTC 5 cut(s) 1038, 1100, 1173, 1371, 1429
MmeI TCCRAC 2 cut(s) 214, 1130
MseI TTAA 2 cut(s) 738, 900
MspA1I CMGCKG 2 cut(s) 776, 1064
MspI CCGG 3 cut(s) 117, 587, 1287
MspR9I CCNGG 3 cut(s) 587, 1287, 1301
MunI CAATTG 2 cut(s) 1337, 1402
MvaI CCWGG 1 cut(s) 1301
MvnI CGCG 3 cut(s) 593, 776, 1064
MwoI GCNNNNNNNGC 6 cut(s) 758, 767, 776, 838, 941, 1047
NciI CCSGG 2 cut(s) 587, 1287
NdeI CATATG 2 cut(s) 386, 950
NdeII GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
NheI GCTAGC 1 cut(s) 1492
NlaIII CATG 7 cut(s) 68, 304, 475, 685, 712, 1015, 1254
NlaIV GGNNCC 1 cut(s) 584
NmeAIII GCCGAG 2 cut(s) 488, 1026
NmuCI GTSAC 4 cut(s) 337, 433, 1515, 1649
NspI RCATGY 2 cut(s) 68, 685
PagI TCATGA 1 cut(s) 708
PceI AGGCCT 1 cut(s) 167
PciI ACATGT 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 816
PfeI GAWTC 2 cut(s) 54, 565
PflFI GACNNNGTC 1 cut(s) 1513
PkrI GCNGC 6 cut(s) 298, 592, 754, 778, 1452, 1582
PleI GAGTC 5 cut(s) 1038, 1099, 1172, 1371, 1428
PpsI GAGTC 5 cut(s) 1038, 1099, 1172, 1371, 1428
PscI ACATGT 1 cut(s) 681
Psp124BI GAGCTC 3 cut(s) 430, 657, 1371
Psp1406I AACGTT 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 1299
PspGI CCWGG 1 cut(s) 1299
PspN4I GGNNCC 1 cut(s) 584
PsyI GACNNNGTC 1 cut(s) 1513
RsaI GTAC 3 cut(s) 145, 383, 614
RsaNI GTAC 3 cut(s) 144, 382, 613
SacI GAGCTC 3 cut(s) 430, 657, 1371
SacII CCGCGG 2 cut(s) 777, 1065
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 2 cut(s) 738, 900
SatI GCNGC 6 cut(s) 297, 591, 753, 777, 1451, 1581
Sau3AI GATC 6 cut(s) 69, 159, 288, 859, 1014, 1471
SchI GAGTC 5 cut(s) 1038, 1100, 1173, 1371, 1429
ScrFI CCNGG 3 cut(s) 587, 1287, 1301
SduI GDGCHC 7 cut(s) 285, 430, 504, 657, 1336, 1371, 1603
SfaNI GCATC 3 cut(s) 541, 1152, 1313
Sfr303I CCGCGG 2 cut(s) 777, 1065
SgrBI CCGCGG 2 cut(s) 777, 1065
SmlI CTYRAG 2 cut(s) 485, 1379
SmoI CTYRAG 2 cut(s) 485, 1379
SseBI AGGCCT 1 cut(s) 167
SspMI CTAG 6 cut(s) 827, 1053, 1196, 1493, 1512, 1705
SstI GAGCTC 3 cut(s) 430, 657, 1371
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 3 cut(s) 585, 1285, 1299
StyI CCWWGG 2 cut(s) 49, 391
TaaI ACNGT 3 cut(s) 26, 143, 1117
TaiI ACGT 2 cut(s) 1037, 1592
TatI WGTACW 2 cut(s) 381, 612
TauI GCSGC 3 cut(s) 593, 755, 779
TfiI GAWTC 2 cut(s) 54, 565
Tru1I TTAA 2 cut(s) 738, 900
Tru9I TTAA 2 cut(s) 738, 900
TscAI CASTG 9 cut(s) 66, 79, 346, 427, 511, 772, 1122, 1462, 1617
TseFI GTSAC 4 cut(s) 337, 433, 1515, 1649
TseI GCWGC 3 cut(s) 296, 1450, 1580
Tsp45I GTSAC 4 cut(s) 337, 433, 1515, 1649
TspDTI ATGAA 4 cut(s) 317, 644, 860, 1015
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 9 cut(s) 66, 79, 346, 427, 511, 772, 1122, 1462, 1617
Tth111I GACNNNGTC 1 cut(s) 1513
XagI CCTNNNNNAGG 1 cut(s) 966
XapI RAATTY 3 cut(s) 304, 409, 1209
XceI RCATGY 2 cut(s) 68, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 721, 1068
XspI CTAG 6 cut(s) 827, 1053, 1196, 1493, 1512, 1705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.