RLG00000035145

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
61589260 .. 61590963
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035145

Sequence Viewer

Length: 1704 bp
ATGGCATGCCAATTTGCAGTGCAGGTGATCAAAGGAAGATGGTTCACCGTGTTTGCCTCGTTTCTGATCATGGCTGGAGCCGGTGCTACTTATCTGTTTGGTTCTTATTCCAAAGACATCAAGTCCAGTCTTGGCTATGATCAATCAACTCTCAACTTGATTGGCTTCTTCAAGGACCTTGGTGCAAATGTGGGAGTCCTCGCAGGCCTAATAGGTGAAGTAACTCCAACTTGGTTTGTTCTTCTAGTTGGTTCTGCCATGAATTTCGCAGGGTATTTCATGATTTGGCTTGCTGTCACTGGCAAAATAGCCAAACCTAAAGTCTGGCAGATGTGCCTTTACATATGCGTTGGGGCCAATTCTCAGAATTTTGTAAACACAGGTGCCCTTGTCACTTGTGTCAAGAATTTCCCAGAAAGTAGAGGTGTTATGCTTGGTTTGTTAAAGGGTTATACTGGGCTTAGTGGAGCAATATTCACCCAAATTTACTTGGCCATTTACCCAAACGATTCAAAGTCTTTGATTCTTTTGATTGCTTGGCTTCCTGCTGCTCTTTCAGTCATTTTTGTATACACCATTCGTCCAATGAAAGTTGTTAGGCAACAAAATGAGCTGAGAGTCTTTTACCATTTCCTCTATATCTCACTTTCTCTTGGAGTTTTCCTCATGGTAATGACTCTGCTTGAAAAAACAATCACTTTCTCTCGTGCTGCTTATGCCGGAAGCACCACCGTGGTTTGTATGATCATGTTCATGCCTCTTGGAATTGCAATCAGAGAAGAGCTTGCACTGTGGAATCTCAAGAAACAATCTGTTGATTCTCCAGTTGAGGTGAGCATTGATAAAAAACCAAACCCAGTTCCAGAAATTCAAGAAATTCAAGAATTGGATTCTTTCCCACCCAAATCCTCATTAGGCCAGGAAAAGAAAACACAGATTACTACTACCACTACATCTTGCTGTGGTGATATATGCAATAAGCCAGAAAGAGGGGAAGACTATACAATACTACAAGCACTTTTGAGTACTGATATGATTATTCTATTCATTGCAACTTTTTGTGGGTTGGGGTCAAGTTTGACAGCAGTAGACAATTTGGGTCAGATTGGTGAGTCTCTGGGATATCCCACTAAGACAGTAAGCACTTTTGTGTCATTAGTGAGCATTTGGAATTATTTTGGGAGGGTCTTTTCTGGTTTTGTCTCTGAAAGCCTAATGGTGAAGTGGAAAATCCCCAGAACACTCATGATGACCTTTATGCTTGTTCTATCATCTATTGCATATCTCTCCATTGCTTTCCCATTCCCTGGTTCAGTTTATATGGCTTCGGTTATGATTGGGGTTTCTTTTGGTGCTCAATTGACACTGCTTTTCACAATCATATCTGAGCTGTTTGGGCTCAAGTACTATGCTACATTGTTCAACTGCGGACAGCTAGCGAGTCCTCTCGGGTCTTACATTCTCAATGTGAGGGTCACCGGGATGCTCTATGATCGAGAAGCTTTGAAGGTGTTGGCAAAGAAAGGGATGACAAGATCTTCGGTGAAGGAGCTGGTTTGCATTGGGAGTCAGTGTTATAGGCTGTCGTTTACAATTTTGGCCGGTATCACATTCTTTGGTGCTCTTATTTCACTGGTTTTGGTGATTAGGACTAGAGAGTTCTACAAAGGTGATATATACAAGAAGTATAGAGAAGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

62.61

Weight (kDa)

9.1

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 257 2.9e-95 Nodulin-like
NFD4_C PF23262 344 - 555 8.8e-16 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccI GTMKAC 2 cut(s) 570, 1089
AciI CCGC 1 cut(s) 1428
AcoI YGGCCR 2 cut(s) 492, 1599
AcsI RAATTY 6 cut(s) 262, 367, 406, 483, 867, 876
AfaI GTAC 2 cut(s) 1027, 1406
AfiI CCNNNNNNNGG 2 cut(s) 989, 1307
AgsI TTSAA 7 cut(s) 172, 513, 686, 872, 881, 1423, 1507
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 918, 1306
AleI CACNNNNGTG 2 cut(s) 731, 1148
AluBI AGCT 6 cut(s) 613, 784, 1390, 1435, 1502, 1552
AluI AGCT 6 cut(s) 613, 784, 1390, 1435, 1502, 1552
Alw21I GWGCWC 2 cut(s) 1357, 1624
Alw26I GTCTC 2 cut(s) 1119, 1207
Ama87I CYCGRG 1 cut(s) 1448
AoxI GGCC 5 cut(s) 205, 354, 492, 916, 1599
ApeKI GCWGC 2 cut(s) 548, 710
ApoI RAATTY 6 cut(s) 262, 367, 406, 483, 867, 876
ArsI GACNNNNNNTTYG 4 cut(s) 306, 338, 1522, 1554
AspS9I GGNCC 2 cut(s) 175, 354
AsuC2I CCSGG 1 cut(s) 1480
AsuNHI GCTAGC 1 cut(s) 1435
AvaI CYCGRG 1 cut(s) 1448
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 388
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 1401
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 2 cut(s) 1357, 1624
BbvI GCAGC 2 cut(s) 535, 697
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 920, 1308
BclI TGATCA 4 cut(s) 27, 66, 139, 744
BcnI CCSGG 1 cut(s) 1480
BcoDI GTCTC 2 cut(s) 1119, 1207
BfaI CTAG 3 cut(s) 245, 1436, 1653
BfuAI ACCTGC 1 cut(s) 13
BglII AGATCT 1 cut(s) 1535
BisI GCNGC 2 cut(s) 549, 711
BlsI GCNGC 2 cut(s) 550, 712
BmcAI AGTACT 2 cut(s) 1027, 1406
Bme1390I CCNGG 3 cut(s) 920, 1308, 1480
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 1448
BmgT120I GGNCC 2 cut(s) 175, 354
BmiI GGNNCC 3 cut(s) 79, 355, 385
BmrFI CCNGG 3 cut(s) 920, 1308, 1480
BmrI ACTGGG 2 cut(s) 465, 851
BmsI GCATC 1 cut(s) 1473
BmtI GCTAGC 1 cut(s) 1439
BmuI ACTGGG 2 cut(s) 465, 851
BpiI GAAGAC 1 cut(s) 1002
BplI GAGNNNNNCTC 2 cut(s) 648, 680
BpmI CTGGAG 2 cut(s) 96, 807
BpuEI CTTGAG 2 cut(s) 785, 1385
BpuMI CCSGG 1 cut(s) 1480
BsaJI CCNNGG 3 cut(s) 178, 732, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 1558, 1588
Bsc4I CCNNNNNNNGG 2 cut(s) 989, 1307
Bse118I RCCGGY 2 cut(s) 80, 1601
Bse1I ACTGG 6 cut(s) 126, 304, 460, 824, 857, 1638
Bse3DI GCAATG 2 cut(s) 1047, 1290
BseBI CCWGG 2 cut(s) 920, 1308
BseDI CCNNGG 3 cut(s) 178, 732, 1306
BseGI GGATG 2 cut(s) 1488, 1533
BseLI CCNNNNNNNGG 2 cut(s) 989, 1307
BseMI GCAATG 2 cut(s) 1047, 1290
BseMII CTCAG 3 cut(s) 377, 605, 1377
BseNI ACTGG 6 cut(s) 126, 304, 460, 824, 857, 1638
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 535, 697
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 5 cut(s) 207, 356, 494, 918, 1601
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 1357, 1624
BsiHKCI CYCGRG 1 cut(s) 1448
BsiSI CCGG 4 cut(s) 81, 720, 1479, 1602
BslI CCNNNNNNNGG 2 cut(s) 989, 1307
BsmAI GTCTC 2 cut(s) 1119, 1207
BsnI GGCC 5 cut(s) 207, 356, 494, 918, 1601
BsoBI CYCGRG 1 cut(s) 1448
Bsp1286I GDGCHC 4 cut(s) 388, 1357, 1401, 1624
Bsp143I GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
BspACI CCGC 1 cut(s) 1428
BspANI GGCC 5 cut(s) 207, 356, 494, 918, 1601
BspCNI CTCAG 3 cut(s) 376, 606, 1378
BspHI TCATGA 2 cut(s) 279, 1245
BspLI GGNNCC 3 cut(s) 79, 355, 385
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 1439
BspQI GCTCTTC 1 cut(s) 774
BspT107I GGYRCC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 1047, 1290
BsrFI RCCGGY 2 cut(s) 80, 1601
BsrI ACTGG 6 cut(s) 126, 304, 460, 824, 857, 1638
BssAI RCCGGY 2 cut(s) 80, 1601
BssECI CCNNGG 3 cut(s) 178, 732, 1306
BssMI GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
BssNAI GTATAC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 571
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 920, 1308
Bst4CI ACNGT 4 cut(s) 49, 733, 792, 1138
Bst6I CTCTTC 1 cut(s) 774
BstC8I GCNNGC 5 cut(s) 7, 205, 291, 786, 1437
BstDEI CTNAG 5 cut(s) 363, 461, 614, 1131, 1386
BstDSI CCRYGG 1 cut(s) 732
BstEII GGTNACC 1 cut(s) 1474
BstF5I GGATG 2 cut(s) 1488, 1533
BstKTI GATC 6 cut(s) 30, 69, 142, 747, 1495, 1538
BstMAI GTCTC 2 cut(s) 1119, 1207
BstMBI GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
BstMWI GCNNNNNNNGC 2 cut(s) 716, 1396
BstNI CCWGG 2 cut(s) 920, 1308
BstNSI RCATGY 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 1474
BstSCI CCNGG 3 cut(s) 918, 1306, 1478
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 535, 697
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 1 cut(s) 1535
BstYI RGATCY 1 cut(s) 1535
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 5 cut(s) 207, 356, 494, 918, 1601
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 2 cut(s) 1488, 1533
BtsI GCAGTG 2 cut(s) 24, 1364
BtsIMutI CAGTG 6 cut(s) 24, 297, 788, 1364, 1577, 1631
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 5 cut(s) 7, 205, 291, 786, 1437
CciI TCATGA 2 cut(s) 279, 1245
Cfr10I RCCGGY 2 cut(s) 80, 1601
Cfr13I GGNCC 2 cut(s) 175, 354
Csp6I GTAC 2 cut(s) 1026, 1405
CviAII CATG 8 cut(s) 6, 70, 259, 280, 667, 748, 754, 1246
CviQI GTAC 2 cut(s) 1026, 1405
DdeI CTNAG 5 cut(s) 363, 461, 614, 1131, 1386
DpnI GATC 6 cut(s) 29, 68, 141, 746, 1494, 1537
DpnII GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 492, 1599
Eam1104I CTCTTC 1 cut(s) 774
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 774
Eco130I CCWWGG 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 1401
Eco32I GATATC 1 cut(s) 1124
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 1448
Eco91I GGTNACC 1 cut(s) 1474
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 1474
EcoRII CCWGG 2 cut(s) 918, 1306
EcoRV GATATC 1 cut(s) 1124
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 8 cut(s) 9, 73, 262, 283, 670, 751, 757, 1249
FatI CATG 8 cut(s) 5, 69, 258, 279, 666, 747, 753, 1245
FauNDI CATATG 1 cut(s) 344
FbaI TGATCA 4 cut(s) 27, 66, 139, 744
FblI GTMKAC 2 cut(s) 570, 1089
Fnu4HI GCNGC 2 cut(s) 549, 711
FokI GGATG 2 cut(s) 1495, 1540
FriOI GRGCYC 1 cut(s) 1401
Fsp4HI GCNGC 2 cut(s) 549, 711
FspBI CTAG 3 cut(s) 245, 1436, 1653
GluI GCNGC 2 cut(s) 549, 711
GsuI CTGGAG 2 cut(s) 96, 807
HaeIII GGCC 5 cut(s) 207, 356, 494, 918, 1601
HapII CCGG 4 cut(s) 81, 720, 1479, 1602
Hin1II CATG 8 cut(s) 9, 73, 262, 283, 670, 751, 757, 1249
HindIII AAGCTT 1 cut(s) 1500
HpaII CCGG 4 cut(s) 81, 720, 1479, 1602
Hpy166II GTNNAC 5 cut(s) 45, 376, 571, 1090, 1590
Hpy188I TCNGA 6 cut(s) 66, 366, 776, 1104, 1207, 1387
Hpy188III TCNNGA 8 cut(s) 280, 403, 802, 863, 872, 881, 1246, 1496
Hpy8I GTNNAC 5 cut(s) 45, 376, 571, 1090, 1590
HpyAV CCTTC 2 cut(s) 1501, 1540
HpyCH4III ACNGT 4 cut(s) 49, 733, 792, 1138
HpyCH4V TGCA 9 cut(s) 17, 22, 185, 770, 788, 975, 1052, 1280, 1560
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 1396
HpyF3I CTNAG 5 cut(s) 363, 461, 614, 1131, 1386
Hsp92II CATG 8 cut(s) 9, 73, 262, 283, 670, 751, 757, 1249
Ksp22I TGATCA 4 cut(s) 27, 66, 139, 744
Kzo9I GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 3 cut(s) 77, 467, 1549
Lsp1109I GCAGC 2 cut(s) 535, 697
LweI GCATC 1 cut(s) 1473
MaeI CTAG 3 cut(s) 245, 1436, 1653
MaeIII GTNAC 4 cut(s) 220, 295, 391, 1474
MalI GATC 6 cut(s) 29, 68, 141, 746, 1494, 1537
MboI GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
MboII GAAGA 6 cut(s) 48, 160, 233, 791, 1007, 1530
MfeI CAATTG 1 cut(s) 1358
MflI RGATCY 1 cut(s) 1535
MhlI GDGCHC 4 cut(s) 388, 1357, 1401, 1624
MlsI TGGCCA 1 cut(s) 494
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 6 cut(s) 204, 627, 670, 1121, 1450, 1576
MmeI TCCRAC 1 cut(s) 251
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1148, 1481
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 4 cut(s) 81, 720, 1479, 1602
MspR9I CCNGG 3 cut(s) 920, 1308, 1480
MunI CAATTG 1 cut(s) 1358
MvaI CCWGG 2 cut(s) 920, 1308
MwoI GCNNNNNNNGC 2 cut(s) 716, 1396
NciI CCSGG 1 cut(s) 1480
NdeI CATATG 1 cut(s) 344
NdeII GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
NheI GCTAGC 1 cut(s) 1435
NlaIII CATG 8 cut(s) 9, 73, 262, 283, 670, 751, 757, 1249
NlaIV GGNNCC 3 cut(s) 79, 355, 385
NmuCI GTSAC 3 cut(s) 295, 391, 1474
NspI RCATGY 1 cut(s) 9
OliI CACNNNNGTG 2 cut(s) 731, 1148
PaeI GCATGC 1 cut(s) 9
PagI TCATGA 2 cut(s) 279, 1245
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 774
PfeI GAWTC 5 cut(s) 509, 523, 796, 818, 890
PflMI CCANNNNNTGG 1 cut(s) 1307
PkrI GCNGC 2 cut(s) 550, 712
PleI GAGTC 6 cut(s) 203, 626, 670, 1120, 1449, 1575
PpsI GAGTC 6 cut(s) 203, 626, 670, 1120, 1449, 1575
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 918, 1306
PspEI GGTNACC 1 cut(s) 1474
PspGI CCWGG 2 cut(s) 918, 1306
PspN4I GGNNCC 3 cut(s) 79, 355, 385
PspPI GGNCC 2 cut(s) 175, 354
PspPPI RGGWCCY 1 cut(s) 175
PsuI RGATCY 1 cut(s) 1535
RsaI GTAC 2 cut(s) 1027, 1406
RsaNI GTAC 2 cut(s) 1026, 1405
RseI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1148, 1481
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 2 cut(s) 549, 711
Sau3AI GATC 6 cut(s) 27, 66, 139, 744, 1492, 1535
Sau96I GGNCC 2 cut(s) 175, 354
ScaI AGTACT 2 cut(s) 1027, 1406
SchI GAGTC 6 cut(s) 204, 627, 670, 1121, 1450, 1576
ScrFI CCNGG 3 cut(s) 920, 1308, 1480
SduI GDGCHC 4 cut(s) 388, 1357, 1401, 1624
SfaNI GCATC 1 cut(s) 1473
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 5 cut(s) 671, 731, 752, 1148, 1481
SmlI CTYRAG 2 cut(s) 800, 1400
SmoI CTYRAG 2 cut(s) 800, 1400
SphI GCATGC 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 1 cut(s) 1428
SspI AATATT 1 cut(s) 474
SspMI CTAG 3 cut(s) 245, 1436, 1653
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 918, 1306, 1478
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 4 cut(s) 49, 733, 792, 1138
TaqI TCGA 1 cut(s) 1495
TatI WGTACW 2 cut(s) 1025, 1404
TfiI GAWTC 5 cut(s) 509, 523, 796, 818, 890
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 6 cut(s) 24, 304, 795, 1371, 1577, 1638
TseFI GTSAC 3 cut(s) 295, 391, 1474
TseI GCWGC 2 cut(s) 548, 710
Tsp45I GTSAC 3 cut(s) 295, 391, 1474
TspDTI ATGAA 5 cut(s) 268, 275, 602, 742, 1036
TspRI CASTG 6 cut(s) 24, 304, 795, 1371, 1577, 1638
Van91I CCANNNNNTGG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 6 cut(s) 262, 367, 406, 483, 867, 876
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 2 cut(s) 570, 1089
XspI CTAG 3 cut(s) 245, 1436, 1653
ZrmI AGTACT 2 cut(s) 1027, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.