Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002027

Physical Location & Seq

Genomic Coordinates Reverse (-)

35531448 .. 35532421

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTACATAGGGGAGCTTCAAAGAGTTTCATAGCTGAATGTGAAGCACTGAGAAACATCAGGCATCGAAATCTGGTCAAGATTATAACTGCATGTTCAAGTGTTGATTTTCGTGGAAATGATTTCAAGGCTCTAGTTTATGAATTCATGGAAAATGGGAGCCTAGAAGAGTGGTTGCATCCATCCACTGGAATTGAAACGGTAATAGATGCACCCAAAACTTTAAGTCTTGTCCAGAGGCTCGATATCGCCATTGATGTTGCTTCTGCATTGGATTATCTTCACAATCATTGTGAAACACCAATAGTTCACTGTGATCTCAAACCAAGTAACGTTCTTTTGGACAAAGAGTTGACCGCACATGTTTCTGACTTTGGACTGGTAAGGTTTCTCTCAAAATTAACTGATAACATTTCTGGAAATCAATCAAGCTCCATTGGAATAAGAGGATCGGTTGGTTATGCTGCTCCAGAGTATGGTATGGGAAGTGAGGTGTCAACCTATGGGGATGTGTACAGCTTTGGCGTTCTCTTGTTAGAAATGTTTACTGGGAAGAGACCTACTGATCCTATGTTCAGTGACAGCTTGAATCTTCATAACTTTGTGAAGATGGTTCTACCTAAACATCTTGAGGAGATTACGGATTCACAACTTGAAGGGGGCATCACCACTGTTGATGAAGCTCGCAATCAACCAATCACAAGACCACAAAAAATTGAAGAGTGCTTAAAGTTGATATTTGGAATTGGAATCGCATGTTCTGCTGAATCCCCAACAAACCGAAAGGATATAAGTGATGTTGTATCTGAATTGCACACCGTCAGGAACAATCTTCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

280

Amino Acids

30.91

Weight (kDa)

5.36

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 216	2.6e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	8 - 203	4.8e-30	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28120
fragaria_vesca	FvH4_3g30820 FvH4_3g30830
malus_domestica	MD03G1126600.v1.1 MD04G1112900.v1.1 MD11G1146900.v1.1 MD11G1147000.v1.1 MD11G1147200.v1.1 MD12G1129200.v1.1
prunus_persica	Prupe.6G110900_v2.0.a1 Prupe.6G111100_v2.0.a1 Prupe.6G111300_v2.0.a1
pyrus_communis	pycom04g10260 pycom04g10300 pycom11g12040
rosa_chinensis	RchiOBHm_Chr5g0056971 RchiOBHm_Chr5g0057001 RchiOBHm_Chr5g0057021
rosa_laevigata	RLG00000035144 RLG00000035145 RLG00000035147
rosa_multiflora	Rmu_sc0002035.1_g000001 Rmu_sc0009185.1_g000006 Rmu_sc0009185.1_g000013
rosa_roxburghii	Rroxscaffold_1G00023150 Rroxscaffold_1G00023190 Rroxscaffold_1G00023200
rosa_rugosa	Rorug05G0305000 Rorug05G0305100 Rorug05G0305200
rosa_samantha	Rh5AG374200 Rh5AG374500 Rh5AG374600 Rh5BG385300 Rh5BG385400 Rh5BG385700 Rh5CG408500 Rh5CG408900 Rh5CG409100 Rh5DG398600 Rh5DG398900 Rh5DG399100
rosa_wichuraiana	Rw5G035230 Rw5G035250 Rw5G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB7I	CCANNNNNTGG	2 cut(s)	188, 476
AciI	CCGC	1 cut(s)	357
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	2 cut(s)	457, 560
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	188, 476
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	7 cut(s)	21, 99, 127, 197, 589, 656, 719
AluBI	AGCT	6 cut(s)	17, 35, 432, 519, 585, 683
AluI	AGCT	6 cut(s)	17, 35, 432, 519, 585, 683
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	2 cut(s)	457, 560
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	2 cut(s)	190, 604
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	3 cut(s)	134, 164, 841
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	4 cut(s)	73, 187, 199, 672
BmuI	ACTGGG	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 476
Bse1I	ACTGG	3 cut(s)	193, 384, 553
BseGI	GGATG	3 cut(s)	178, 182, 514
BseLI	CCNNNNNNNGG	2 cut(s)	188, 476
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	193, 384, 553
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	188, 476
BsmAI	GTCTC	1 cut(s)	550
Bso31I	GGTCTC	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	316, 449, 565
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	457, 560
BspTNI	GGTCTC	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	193, 384, 553
BssMI	GATC	3 cut(s)	316, 449, 565
Bst4CI	ACNGT	4 cut(s)	202, 314, 673, 820
Bst6I	CTCTTC	3 cut(s)	162, 548, 714
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	178, 182, 514
BstKTI	GATC	3 cut(s)	319, 452, 568
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	3 cut(s)	316, 449, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNSI	RCATGY	3 cut(s)	96, 365, 759
BstV1I	GCAGC	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	178, 182, 514
BtsIMutI	CAGTG	5 cut(s)	47, 186, 310, 583, 669
Cac8I	GCNNGC	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	514
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	4 cut(s)	93, 148, 362, 756
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	318, 451, 567
DpnII	GATC	3 cut(s)	316, 449, 565
Eam1104I	CTCTTC	3 cut(s)	162, 548, 714
EarI	CTCTTC	3 cut(s)	162, 548, 714
Eco31I	GGTCTC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	4 cut(s)	96, 151, 365, 759
FatI	CATG	4 cut(s)	92, 147, 361, 755
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	3 cut(s)	165, 169, 521
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	3 cut(s)	134, 164, 841
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	453
Hin1II	CATG	4 cut(s)	96, 151, 365, 759
HincII	GTYRAC	2 cut(s)	354, 498
HindII	GTYRAC	2 cut(s)	354, 498
HinfI	GANTC	4 cut(s)	589, 644, 750, 767
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	5 cut(s)	310, 354, 498, 514, 546
Hpy188I	TCNGA	2 cut(s)	370, 808
Hpy188III	TCNNGA	6 cut(s)	79, 235, 417, 470, 629, 823
Hpy8I	GTNNAC	5 cut(s)	310, 354, 498, 514, 546
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	4 cut(s)	202, 314, 673, 820
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	92, 178, 212, 269, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	96, 151, 365, 759
Kzo9I	GATC	3 cut(s)	316, 449, 565
LmnI	GCTCC	4 cut(s)	14, 159, 437, 472
LpnPI	CCDG	9 cut(s)	46, 59, 174, 248, 365, 402, 483, 534, 808
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	4 cut(s)	73, 187, 199, 672
MaeI	CTAG	3 cut(s)	134, 164, 841
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	3, 329, 578
MalI	GATC	3 cut(s)	318, 451, 567
MboI	GATC	3 cut(s)	316, 449, 565
MboII	GAAGA	7 cut(s)	179, 272, 565, 584, 619, 731, 824
MluCI	AATT	6 cut(s)	143, 192, 398, 714, 744, 809
MnlI	CCTC	4 cut(s)	231, 440, 484, 625
MseI	TTAA	3 cut(s)	224, 401, 728
MwoI	GCNNNNNNNGC	1 cut(s)	761
NdeII	GATC	3 cut(s)	316, 449, 565
NlaIII	CATG	4 cut(s)	96, 151, 365, 759
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	3 cut(s)	96, 365, 759
PciI	ACATGT	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	589, 644, 750, 767
PflMI	CCANNNNNTGG	2 cut(s)	188, 476
PkrI	GCNGC	1 cut(s)	466
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	224, 401, 728
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	316, 449, 565
SfaNI	GCATC	4 cut(s)	73, 187, 199, 672
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	6 cut(s)	143, 192, 398, 714, 744, 809
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	3 cut(s)	134, 164, 841
TaaI	ACNGT	4 cut(s)	202, 314, 673, 820
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	67, 243
TasI	AATT	6 cut(s)	143, 192, 398, 714, 744, 809
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	589, 644, 750, 767
Tru1I	TTAA	3 cut(s)	224, 401, 728
Tru9I	TTAA	3 cut(s)	224, 401, 728
TscAI	CASTG	5 cut(s)	54, 193, 317, 583, 676
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	5 cut(s)	19, 136, 156, 584, 693
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	5 cut(s)	54, 193, 317, 583, 676
Van91I	CCANNNNNTGG	2 cut(s)	188, 476
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	3 cut(s)	96, 365, 759
XspI	CTAG	3 cut(s)	134, 164, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.