Prupe.6G110900_v2.0.a1

Nodulin-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
7954024 .. 7956242
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G110900.1

Sequence Viewer

Length: 1734 bp
ATGGCCAAAATGAGCAGTTCCAAAGCCAGTAATGGCAGCAGAAAAAACAGTGAACTGCTTCCTTTTGCAGTCCATGTGGTTCAAGGCAGATGGTTCTCTGTGTTTGCCTCCTTTCTTATCATGGCTGGAGCTGGTGCTACTTACCTCTTTGGTGTCTACTCCAAGCAGATCAAGTCCTCTCTTGGCTATGACCAAACAACCCTCAACTTGCTAGGGTTCTTCAAAGACCTTGGTGCAAATGTTGGTGTCCTCTCAGGCCTTATTGGTGAAGTCACCCCAACCTGGTTTGTGCTCCTAATTGGCTCAGCCATGAATTTTGCAGGCTACTTCATGATTTGGCTGGCTGTGACTGCCAAAATTCCCAAGCCAAAAGTTTGGCACATGTGCCTTTACATTTGCATTGGGGCCAACTCTCAAAACTTTGCAAACACAGGAGCCCTTGTCACTTGTGTCAAGAATTTCCCAGCTAGCAGAGGTGTTATGCTTGGTCTGTTAAAGGGTTTTACTGGGCTTAGTGGAGCCATATTTACTCAAATTTACTTGGCTGTCTATGGAAACAATTCAAAATCCATGATTCTTCTCATTGCTTGGCTTCCTGCTGCTCTATCAGTAGTTTTTGTTTACACCATTAGACCCATGAAGCTTGTTAGGCAACCCAATGAGCTCAGAGTCTTTTACCATTTCCTCTATGTCTCAATTGCCCTTGCACTTTTCCTCATGGCTATGATTATAGTTCAAAAGCAAGTTTCTTTCTCCCAAGCTGCCTATGCTGGAAGTGTCACTGTCGTTTGTGTGTTCCTCTTTGTCCCTCTTGGCATTGCCATTAGAGAGGAGCTGCTCCTCTGGAACCTCAAGAAACAACCTGGTGATCCTCCAACTGAGTTGACCATTGAGAAAGCACCACAAACAATTGAAGCGAAAGAAGATGCATTGCCATTAAATTCCTCAAAAGAGCAAAAACAGGACACAAAGATATCTTGTTTTGCTGACATATTCAACAAGCCAGAAAGAGGAGAAGACTACACCATTTTACAAGCATTACTAAGTGTCGACATGCTCATTTTGTTCATTGCGACGCTATGCGGACTCGGGTCAAGTTTGACAGCAGTAGACAATTTGGGGCAAATTGGTGAGTCTCTGGGATATCCAACCAAAACAATAAGCTCTTTTGTGTCATTAGTTAGTATATGGAACTACTTTGGGAGAGTCTTTTCTGGGTTTGTCTCTGAAAGCCTATTGGTAAAGTGGAAAGTCCCCAGACCCCTCATGATGACCTTTGTTCTTCTTCTATCATGTGCTGGCCATCTCCTCATTGCCTTTCCAGCCCCTGGTTCAGTTTATGTGGCATCCGTGATCATTGGGTTTTCTTTCGGTGCCCAACTTCCGTTGCTTTTCGCCATCATTTCCGAACTCTTTGGCCTCAAGTACTACTCTACATTGTTCAATTGTGGACAACTAGCAAGTCCCCTTGGCTCCTATATACTGAATGTGAAGGTCACTGGAATGCTCTATGACAGAGAGGCATTGAAAGAGCTAGCAAAGAAAGGGATGGCTAGGTCTTCGGTGAAGGAGCTAATTTGCCTTGGGAGCCAATGCTATAGGTTGGCTTTCACAATTTTAGCTTCAATCACATTCTTTGGTGCTCTTGTTTCACTGGTTTTGGTGATCAGGACCCGAGAGTTCTACAAAGGTGATATATACAAGAAGTTCACAGAAGAAGCAGAAGATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

578

Amino Acids

63.24

Weight (kDa)

9.21

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1373
AccB7I CCANNNNNTGG 1 cut(s) 1328
AccI GTMKAC 3 cut(s) 156, 1050, 1110
AciI CCGC 1 cut(s) 1083
AclWI GGATC 1 cut(s) 863
AcoI YGGCCR 2 cut(s) 3, 1300
AcsI RAATTY 5 cut(s) 313, 357, 457, 534, 940
AfaI GTAC 1 cut(s) 1427
AfiI CCNNNNNNNGG 3 cut(s) 282, 1010, 1328
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 9 cut(s) 83, 223, 564, 737, 914, 997, 1444, 1528, 1626
AjnI CCWGG 3 cut(s) 281, 862, 1327
Alw21I GWGCWC 3 cut(s) 294, 666, 1645
Alw26I GTCTC 3 cut(s) 697, 1140, 1228
AlwI GGATC 1 cut(s) 863
AlwNI CAGNNNCTG 1 cut(s) 1328
Ama87I CYCGRG 2 cut(s) 1088, 1674
AoxI GGCC 5 cut(s) 3, 256, 405, 1300, 1417
ApeKI GCWGC 4 cut(s) 36, 599, 761, 835
ApoI RAATTY 5 cut(s) 313, 357, 457, 534, 940
Asp700I GAANNNNTTC 2 cut(s) 57, 559
AspS9I GGNCC 2 cut(s) 405, 1671
AsuHPI GGTGA 7 cut(s) 265, 278, 878, 1142, 1576, 1675, 1703
AsuNHI GCTAGC 2 cut(s) 467, 1534
AvaI CYCGRG 2 cut(s) 1088, 1674
AvaII GGWCC 1 cut(s) 1671
BaeGI GKGCMC 1 cut(s) 1378
BalI TGGCCA 2 cut(s) 5, 1302
BanI GGYRCC 1 cut(s) 1373
BanII GRGCYC 2 cut(s) 439, 666
BbsI GAAGAC 2 cut(s) 1023, 1551
Bbv12I GWGCWC 3 cut(s) 294, 666, 1645
BbvI GCAGC 4 cut(s) 48, 586, 748, 822
BccI CCATC 4 cut(s) 84, 1311, 1406, 1543
BciT130I CCWGG 3 cut(s) 283, 864, 1329
BclI TGATCA 2 cut(s) 1353, 1665
BcoDI GTCTC 3 cut(s) 697, 1140, 1228
BfaI CTAG 5 cut(s) 212, 468, 1457, 1535, 1554
BfmI CTRYAG 1 cut(s) 1597
BisI GCNGC 4 cut(s) 37, 600, 762, 836
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 4 cut(s) 38, 601, 763, 837
BmcAI AGTACT 1 cut(s) 1427
Bme1390I CCNGG 3 cut(s) 283, 864, 1329
Bme18I GGWCC 1 cut(s) 1671
BmeT110I CYCGRG 2 cut(s) 1088, 1674
BmgT120I GGNCC 2 cut(s) 405, 1671
BmiI GGNNCC 8 cut(s) 406, 436, 520, 848, 1375, 1474, 1589, 1673
BmrFI CCNGG 3 cut(s) 283, 864, 1329
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 3 cut(s) 916, 1355, 1717
BmtI GCTAGC 2 cut(s) 471, 1538
BmuI ACTGGG 1 cut(s) 516
BoxI GACNNNNGTC 1 cut(s) 1090
BpiI GAAGAC 2 cut(s) 1023, 1551
BpmI CTGGAG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 836, 1406
BsaJI CCNNGG 4 cut(s) 229, 1327, 1468, 1582
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 1010, 1328
Bse1I ACTGG 4 cut(s) 27, 511, 1504, 1659
Bse3DI GCAATG 5 cut(s) 582, 816, 929, 1068, 1311
BseBI CCWGG 3 cut(s) 283, 864, 1329
BseDI CCNNGG 4 cut(s) 229, 1327, 1468, 1582
BseGI GGATG 2 cut(s) 1346, 1554
BseLI CCNNNNNNNGG 3 cut(s) 282, 1010, 1328
BseMI GCAATG 5 cut(s) 582, 816, 929, 1068, 1311
BseMII CTCAG 4 cut(s) 267, 318, 679, 870
BseNI ACTGG 4 cut(s) 27, 511, 1504, 1659
BseRI GAGGAG 4 cut(s) 830, 845, 1026, 1298
BseSI GKGCMC 1 cut(s) 1378
BseXI GCAGC 4 cut(s) 48, 586, 748, 822
BseYI CCCAGC 1 cut(s) 463
BshFI GGCC 5 cut(s) 5, 258, 407, 1302, 1419
BshNI GGYRCC 1 cut(s) 1373
BsiHKAI GWGCWC 3 cut(s) 294, 666, 1645
BsiHKCI CYCGRG 2 cut(s) 1088, 1674
BslFI GGGAC 3 cut(s) 791, 1238, 1449
BslI CCNNNNNNNGG 3 cut(s) 282, 1010, 1328
BsmAI GTCTC 3 cut(s) 697, 1140, 1228
BsmFI GGGAC 3 cut(s) 791, 1238, 1449
BsmI GAATGC 1 cut(s) 1509
BsnI GGCC 5 cut(s) 5, 258, 407, 1302, 1419
BsoBI CYCGRG 2 cut(s) 1088, 1674
Bsp1286I GDGCHC 5 cut(s) 294, 439, 666, 1378, 1645
Bsp143I GATC 4 cut(s) 168, 868, 1353, 1665
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 1 cut(s) 1083
BspANI GGCC 5 cut(s) 5, 258, 407, 1302, 1419
BspCNI CTCAG 4 cut(s) 266, 317, 678, 871
BspHI TCATGA 2 cut(s) 330, 1266
BspLI GGNNCC 8 cut(s) 406, 436, 520, 848, 1375, 1474, 1589, 1673
BspOI GCTAGC 2 cut(s) 471, 1538
BspPI GGATC 1 cut(s) 863
BspT107I GGYRCC 1 cut(s) 1373
BsrDI GCAATG 5 cut(s) 582, 816, 929, 1068, 1311
BsrI ACTGG 4 cut(s) 27, 511, 1504, 1659
BssECI CCNNGG 4 cut(s) 229, 1327, 1468, 1582
BssMI GATC 4 cut(s) 168, 868, 1353, 1665
BssT1I CCWWGG 3 cut(s) 229, 1468, 1582
Bst2UI CCWGG 3 cut(s) 283, 864, 1329
Bst4CI ACNGT 2 cut(s) 50, 784
BstAPI GCANNNNNTGC 1 cut(s) 1727
BstC8I GCNNGC 5 cut(s) 322, 342, 469, 1300, 1536
BstDEI CTNAG 6 cut(s) 253, 304, 512, 665, 879, 1043
BstF5I GGATG 2 cut(s) 1346, 1554
BstKTI GATC 4 cut(s) 171, 871, 1356, 1668
BstMAI GTCTC 3 cut(s) 697, 1140, 1228
BstMBI GATC 4 cut(s) 168, 868, 1353, 1665
BstMWI GCNNNNNNNGC 6 cut(s) 350, 649, 767, 1322, 1587, 1727
BstNI CCWGG 3 cut(s) 283, 864, 1329
BstNSI RCATGY 2 cut(s) 385, 1057
BstPAI GACNNNNGTC 1 cut(s) 1090
BstSCI CCNGG 3 cut(s) 281, 862, 1327
BstSFI CTRYAG 1 cut(s) 1597
BstSLI GKGCMC 1 cut(s) 1378
BstV1I GCAGC 4 cut(s) 48, 586, 748, 822
BstV2I GAAGAC 2 cut(s) 1023, 1551
BstXI CCANNNNNNTGG 1 cut(s) 375
BsuRI GGCC 5 cut(s) 5, 258, 407, 1302, 1419
BtsCI GGATG 2 cut(s) 1346, 1554
BtsIMutI CAGTG 4 cut(s) 55, 780, 1497, 1652
Cac8I GCNNGC 5 cut(s) 322, 342, 469, 1300, 1536
CaiI CAGNNNCTG 1 cut(s) 1328
CciI TCATGA 2 cut(s) 330, 1266
Cfr13I GGNCC 2 cut(s) 405, 1671
CseI GACGC 1 cut(s) 1084
CsiI ACCWGGT 2 cut(s) 281, 862
Csp6I GTAC 1 cut(s) 1426
CviQI GTAC 1 cut(s) 1426
DdeI CTNAG 6 cut(s) 253, 304, 512, 665, 879, 1043
DpnI GATC 4 cut(s) 170, 870, 1355, 1667
DpnII GATC 4 cut(s) 168, 868, 1353, 1665
EaeI YGGCCR 2 cut(s) 3, 1300
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 3 cut(s) 229, 1468, 1582
Eco147I AGGCCT 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 439, 666
Eco32I GATATC 2 cut(s) 975, 1145
Eco47I GGWCC 1 cut(s) 1671
Eco53kI GAGCTC 1 cut(s) 664
Eco88I CYCGRG 2 cut(s) 1088, 1674
EcoICRI GAGCTC 1 cut(s) 664
EcoO109I RGGNCCY 1 cut(s) 1671
EcoRII CCWGG 3 cut(s) 281, 862, 1327
EcoRV GATATC 2 cut(s) 975, 1145
EcoT14I CCWWGG 3 cut(s) 229, 1468, 1582
EcoT22I ATGCAT 2 cut(s) 931, 1732
EcoT38I GRGCYC 2 cut(s) 439, 666
ErhI CCWWGG 3 cut(s) 229, 1468, 1582
FaqI GGGAC 3 cut(s) 791, 1238, 1449
FbaI TGATCA 2 cut(s) 1353, 1665
FblI GTMKAC 3 cut(s) 156, 1050, 1110
Fnu4HI GCNGC 4 cut(s) 37, 600, 762, 836
FokI GGATG 2 cut(s) 1333, 1561
FriOI GRGCYC 2 cut(s) 439, 666
Fsp4HI GCNGC 4 cut(s) 37, 600, 762, 836
FspBI CTAG 5 cut(s) 212, 468, 1457, 1535, 1554
GluI GCNGC 4 cut(s) 37, 600, 762, 836
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 5 cut(s) 5, 258, 407, 1302, 1419
HgaI GACGC 1 cut(s) 1084
HincII GTYRAC 2 cut(s) 885, 1051
HindII GTYRAC 2 cut(s) 885, 1051
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 5 cut(s) 574, 669, 1086, 1133, 1206
HphI GGTGA 7 cut(s) 265, 278, 878, 1142, 1576, 1675, 1703
Hpy166II GTNNAC 8 cut(s) 53, 157, 622, 885, 1051, 1111, 1451, 1710
Hpy188I TCNGA 3 cut(s) 668, 1228, 1408
Hpy188III TCNNGA 6 cut(s) 331, 454, 844, 853, 1267, 1669
Hpy8I GTNNAC 8 cut(s) 53, 157, 622, 885, 1051, 1111, 1451, 1710
Hpy99I CGWCG 1 cut(s) 1078
HpyAV CCTTC 2 cut(s) 1486, 1561
HpyCH4III ACNGT 2 cut(s) 50, 784
HpyCH4V TGCA 8 cut(s) 68, 236, 320, 399, 425, 707, 929, 1730
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 649, 767, 1322, 1587, 1727
HpyF3I CTNAG 6 cut(s) 253, 304, 512, 665, 879, 1043
Ksp22I TGATCA 2 cut(s) 1353, 1665
Kzo9I GATC 4 cut(s) 168, 868, 1353, 1665
LmnI GCTCC 9 cut(s) 128, 297, 434, 518, 832, 843, 1478, 1570, 1587
Lsp1109I GCAGC 4 cut(s) 48, 586, 748, 822
LweI GCATC 3 cut(s) 916, 1355, 1717
MabI ACCWGGT 2 cut(s) 281, 862
MaeI CTAG 5 cut(s) 212, 468, 1457, 1535, 1554
MaeIII GTNAC 5 cut(s) 271, 346, 442, 778, 1495
MalI GATC 4 cut(s) 170, 870, 1355, 1667
MboI GATC 4 cut(s) 168, 868, 1353, 1665
MboII GAAGA 8 cut(s) 211, 569, 935, 1028, 1274, 1277, 1551, 1727
MfeI CAATTG 3 cut(s) 696, 909, 1444
MhlI GDGCHC 5 cut(s) 294, 439, 666, 1378, 1645
MlsI TGGCCA 2 cut(s) 5, 1302
MluNI TGGCCA 2 cut(s) 5, 1302
MlyI GAGTC 4 cut(s) 678, 1080, 1142, 1215
MmeI TCCRAC 2 cut(s) 899, 1172
Mox20I TGGCCA 2 cut(s) 5, 1302
Mph1103I ATGCAT 2 cut(s) 931, 1732
MroXI GAANNNNTTC 2 cut(s) 57, 559
MscI TGGCCA 2 cut(s) 5, 1302
MseI TTAA 2 cut(s) 494, 938
MslI CAYNNNNRTG 2 cut(s) 722, 1502
Msp20I TGGCCA 2 cut(s) 5, 1302
MspR9I CCNGG 3 cut(s) 283, 864, 1329
MunI CAATTG 3 cut(s) 696, 909, 1444
Mva1269I GAATGC 1 cut(s) 1509
MvaI CCWGG 3 cut(s) 283, 864, 1329
MwoI GCNNNNNNNGC 6 cut(s) 350, 649, 767, 1322, 1587, 1727
NdeII GATC 4 cut(s) 168, 868, 1353, 1665
NheI GCTAGC 2 cut(s) 467, 1534
NlaIV GGNNCC 8 cut(s) 406, 436, 520, 848, 1375, 1474, 1589, 1673
NmuCI GTSAC 5 cut(s) 271, 346, 442, 778, 1495
NsiI ATGCAT 2 cut(s) 931, 1732
NspI RCATGY 2 cut(s) 385, 1057
PagI TCATGA 2 cut(s) 330, 1266
PceI AGGCCT 1 cut(s) 258
PciI ACATGT 1 cut(s) 381
PctI GAATGC 1 cut(s) 1509
PdmI GAANNNNTTC 2 cut(s) 57, 559
PfeI GAWTC 1 cut(s) 574
PflMI CCANNNNNTGG 1 cut(s) 1328
PkrI GCNGC 4 cut(s) 38, 601, 763, 837
PleI GAGTC 4 cut(s) 677, 1080, 1141, 1214
PpsI GAGTC 4 cut(s) 677, 1080, 1141, 1214
PpuMI RGGWCCY 1 cut(s) 1671
PscI ACATGT 1 cut(s) 381
PshAI GACNNNNGTC 1 cut(s) 1090
Psp124BI GAGCTC 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 1671
Psp6I CCWGG 3 cut(s) 281, 862, 1327
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 3 cut(s) 281, 862, 1327
PspN4I GGNNCC 8 cut(s) 406, 436, 520, 848, 1375, 1474, 1589, 1673
PspPI GGNCC 2 cut(s) 405, 1671
PspPPI RGGWCCY 1 cut(s) 1671
PstNI CAGNNNCTG 1 cut(s) 1328
RsaI GTAC 1 cut(s) 1427
RsaNI GTAC 1 cut(s) 1426
RseI CAYNNNNRTG 2 cut(s) 722, 1502
SacI GAGCTC 1 cut(s) 666
SalI GTCGAC 1 cut(s) 1049
SaqAI TTAA 2 cut(s) 494, 938
SatI GCNGC 4 cut(s) 37, 600, 762, 836
Sau3AI GATC 4 cut(s) 168, 868, 1353, 1665
Sau96I GGNCC 2 cut(s) 405, 1671
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 4 cut(s) 678, 1080, 1142, 1215
ScrFI CCNGG 3 cut(s) 283, 864, 1329
SduI GDGCHC 5 cut(s) 294, 439, 666, 1378, 1645
SexAI ACCWGGT 2 cut(s) 281, 862
SfaNI GCATC 3 cut(s) 916, 1355, 1717
SfcI CTRYAG 1 cut(s) 1597
SinI GGWCC 1 cut(s) 1671
SmiMI CAYNNNNRTG 2 cut(s) 722, 1502
SmlI CTYRAG 2 cut(s) 851, 1421
SmoI CTYRAG 2 cut(s) 851, 1421
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 1 cut(s) 1083
SspMI CTAG 5 cut(s) 212, 468, 1457, 1535, 1554
SstI GAGCTC 1 cut(s) 666
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 281, 862, 1327
StyI CCWWGG 3 cut(s) 229, 1468, 1582
TaaI ACNGT 2 cut(s) 50, 784
TaqI TCGA 1 cut(s) 1050
TatI WGTACW 1 cut(s) 1425
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 2 cut(s) 494, 938
Tru9I TTAA 2 cut(s) 494, 938
TscAI CASTG 4 cut(s) 55, 787, 1504, 1659
TseFI GTSAC 5 cut(s) 271, 346, 442, 778, 1495
TseI GCWGC 4 cut(s) 36, 599, 761, 835
Tsp45I GTSAC 5 cut(s) 271, 346, 442, 778, 1495
TspDTI ATGAA 4 cut(s) 319, 326, 653, 1057
TspGWI ACGGA 2 cut(s) 1339, 1374
TspRI CASTG 4 cut(s) 55, 787, 1504, 1659
Van91I CCANNNNNTGG 1 cut(s) 1328
VpaK11BI GGWCC 1 cut(s) 1671
XapI RAATTY 5 cut(s) 313, 357, 457, 534, 940
XceI RCATGY 2 cut(s) 385, 1057
XmiI GTMKAC 3 cut(s) 156, 1050, 1110
XmnI GAANNNNTTC 2 cut(s) 57, 559
XspI CTAG 5 cut(s) 212, 468, 1457, 1535, 1554
ZrmI AGTACT 1 cut(s) 1427
Zsp2I ATGCAT 2 cut(s) 931, 1732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.