Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002027

Physical Location & Seq

Genomic Coordinates Forward (+)

13042936 .. 13044087

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGATGTCTGATTCAGGTACAATTTATCTGTTTGGAACCTATTCCAAAGAGCTCAAACCCACCTTTGGCTATGACCAAGAAACCTGCAACCTGCTGGGGTTCTTCAAGGACCTTGGGGCCAACATCAGCATTTTCGCAGGCTTAATAGCCGAGGTAACACCGACGTGGTTTGTGCTCCTCATTGGTGCGGCCACGAACTTCTTCGGCTACTTCATGATGTGGTTAGGCGTCACGGGAAAGATCGCGAAGCCGGAAATCTGGCACATGTGTGTCTACATGTACATTACAACAAATTCTCTGAGCTTTGTGAACAGGCATTATGGTTACTTGCGTCAAAAACTTCCCACAAAGCCGCGGCATCATCGATCAGCCTCCTCAAAGGTGTTTTATCGCTTTCTGTACTTGTTGATTGTTCTTGCCTTGTTTCTCATGGCAATGACTCTGACTCAGAAATCGGTTGTCTTCCCCAGGGCAGCCCAAGCTACGACTGCCACGGTGGTTTGCTTCCAGCTTTTGATTCCTCTCTTGATTATCATCAGAGAGGAGTTAGTCAGCTGGACACTGACGAAACAAGAACCTAGTCGAATAGCCTTAGAAGAAACACAAGAACAAGGACAACGAAATCAAGGACCACAAGAACTGGAGTTGGATCGAGAGATCATGACCGAAAGAGGAGAAGGCTACACCATTTTACAAGCAATCTTAAGCATTGACATGCTACTCATATTCATTGCAAAATTATTTGGACTTGGATCGAGCTTCACTGCTACTGACAACCTCGGCCAAATCGACGAAGCTTTGGGTTACAAACCTCAGACCATAAACGCATTTGTGTCACTCATCAGCATATGGAACTTCCTTAGAAGATCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

293

Amino Acids

33.21

Weight (kDa)

8.66

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28120
fragaria_vesca	FvH4_3g30820 FvH4_3g30830
malus_domestica	MD03G1126600.v1.1 MD04G1112900.v1.1 MD11G1146900.v1.1 MD11G1147000.v1.1 MD11G1147200.v1.1 MD12G1129200.v1.1
prunus_persica	Prupe.6G110900_v2.0.a1 Prupe.6G111100_v2.0.a1 Prupe.6G111300_v2.0.a1
pyrus_communis	pycom04g10260 pycom04g10300 pycom11g12040
rosa_chinensis	RchiOBHm_Chr5g0056971 RchiOBHm_Chr5g0057001 RchiOBHm_Chr5g0057021
rosa_laevigata	RLG00000035144 RLG00000035145 RLG00000035147
rosa_multiflora	Rmu_sc0002035.1_g000001 Rmu_sc0009185.1_g000006 Rmu_sc0009185.1_g000013
rosa_roxburghii	Rroxscaffold_1G00023150 Rroxscaffold_1G00023190 Rroxscaffold_1G00023200
rosa_rugosa	Rorug05G0305000 Rorug05G0305100 Rorug05G0305200
rosa_samantha	Rh5AG374200 Rh5AG374500 Rh5AG374600 Rh5BG385300 Rh5BG385400 Rh5BG385700 Rh5CG408500 Rh5CG408900 Rh5CG409100 Rh5DG398600 Rh5DG398900 Rh5DG399100
rosa_wichuraiana	Rw5G035230 Rw5G035250 Rw5G035260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	95, 102
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	248, 358
AciI	CCGC	3 cut(s)	191, 356, 358
AclWI	GGATC	2 cut(s)	660, 763
AcoI	YGGCCR	2 cut(s)	192, 784
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	22, 284, 404
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	706
AflIII	ACRYGT	2 cut(s)	267, 279
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	470
AleI	CACNNNNGTG	2 cut(s)	166, 270
AluBI	AGCT	7 cut(s)	55, 306, 485, 514, 558, 762, 800
AluI	AGCT	7 cut(s)	55, 306, 485, 514, 558, 762, 800
Alw21I	GWGCWC	2 cut(s)	57, 180
AlwI	GGATC	2 cut(s)	660, 763
AoxI	GGCC	3 cut(s)	120, 192, 784
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	2 cut(s)	43, 203
AspS9I	GGNCC	3 cut(s)	112, 120, 632
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	112, 632
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	457
Bbv12I	GWGCWC	2 cut(s)	57, 180
BbvI	GCAGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	472
BfaI	CTAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	95, 102
BisI	GCNGC	4 cut(s)	192, 356, 359, 477
BlsI	GCNGC	4 cut(s)	193, 357, 360, 478
Bme1390I	CCNGG	1 cut(s)	472
Bme18I	GGWCC	2 cut(s)	112, 632
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	112, 120, 632
BmiI	GGNNCC	2 cut(s)	40, 121
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	665
Bsa29I	ATCGAT	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	7 cut(s)	115, 153, 356, 470, 471, 495, 781
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	2 cut(s)	444, 732
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	472
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	7 cut(s)	115, 153, 356, 470, 471, 495, 781
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	444, 732
BseMII	CTCAG	3 cut(s)	293, 464, 830
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	4 cut(s)	170, 367, 560, 690
BseXI	GCAGC	1 cut(s)	488
BseYI	CCCAGC	1 cut(s)	97
Bsh1236I	CGCG	2 cut(s)	248, 358
BshFI	GGCC	3 cut(s)	122, 194, 786
BshVI	ATCGAT	1 cut(s)	367
BsiHKAI	GWGCWC	2 cut(s)	57, 180
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	3 cut(s)	122, 194, 786
Bsp1286I	GDGCHC	2 cut(s)	57, 180
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	3 cut(s)	191, 356, 358
BspANI	GGCC	3 cut(s)	122, 194, 786
BspCNI	CTCAG	3 cut(s)	294, 463, 829
BspDI	ATCGAT	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	248, 358
BspHI	TCATGA	2 cut(s)	216, 663
BspLI	GGNNCC	2 cut(s)	40, 121
BspMI	ACCTGC	2 cut(s)	95, 102
BspPI	GGATC	2 cut(s)	660, 763
BspTI	CTTAAG	1 cut(s)	706
BsrDI	GCAATG	2 cut(s)	444, 732
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	7 cut(s)	115, 153, 356, 470, 471, 495, 781
BssMI	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	706
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	5 cut(s)	302, 450, 595, 816, 863
BstDSI	CCRYGG	2 cut(s)	356, 495
BstFNI	CGCG	2 cut(s)	248, 358
BstKTI	GATC	6 cut(s)	246, 371, 655, 663, 758, 872
BstMBI	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 491
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	3 cut(s)	271, 283, 721
BstSCI	CCNGG	1 cut(s)	470
BstUI	CGCG	2 cut(s)	248, 358
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	122, 194, 786
BsuTUI	ATCGAT	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	356, 495
BtrI	CACGTC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	563, 765
BtuMI	TCGCGA	1 cut(s)	248
BveI	ACCTGC	2 cut(s)	95, 102
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	2 cut(s)	216, 663
Cfr13I	GGNCC	3 cut(s)	112, 120, 632
Cfr42I	CCGCGG	1 cut(s)	359
ClaI	ATCGAT	1 cut(s)	367
CseI	GACGC	2 cut(s)	220, 323
Csp6I	GTAC	3 cut(s)	21, 283, 403
CviAII	CATG	6 cut(s)	217, 268, 280, 433, 664, 718
CviQI	GTAC	3 cut(s)	21, 283, 403
DdeI	CTNAG	5 cut(s)	302, 450, 595, 816, 863
DpnI	GATC	6 cut(s)	245, 370, 654, 662, 757, 871
DpnII	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
EaeI	YGGCCR	2 cut(s)	192, 784
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	112, 632
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	6 cut(s)	220, 271, 283, 436, 667, 721
FatI	CATG	6 cut(s)	216, 267, 279, 432, 663, 717
FauNDI	CATATG	1 cut(s)	851
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	192, 356, 359, 477
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	192, 356, 359, 477
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	4 cut(s)	192, 356, 359, 477
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	3 cut(s)	122, 194, 786
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	2 cut(s)	220, 323
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	6 cut(s)	220, 271, 283, 436, 667, 721
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	4 cut(s)	14, 442, 448, 520
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	277, 313
Hpy188I	TCNGA	6 cut(s)	13, 303, 447, 453, 542, 819
Hpy188III	TCNNGA	5 cut(s)	217, 247, 529, 656, 664
Hpy8I	GTNNAC	2 cut(s)	277, 313
Hpy99I	CGWCG	2 cut(s)	169, 797
HpyAV	CCTTC	1 cut(s)	674
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	90, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 491
HpyF3I	CTNAG	5 cut(s)	302, 450, 595, 816, 863
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	220, 271, 283, 436, 667, 721
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	5 cut(s)	157, 232, 326, 806, 837
MalI	GATC	6 cut(s)	245, 370, 654, 662, 757, 871
MboI	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
MboII	GAAGA	5 cut(s)	97, 196, 457, 611, 879
MhlI	GDGCHC	2 cut(s)	57, 180
MluCI	AATT	3 cut(s)	24, 295, 740
MlyI	GAGTC	2 cut(s)	436, 442
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	9 cut(s)	148, 191, 385, 388, 534, 538, 668, 791, 825
MroXI	GAANNNNTTC	2 cut(s)	43, 203
MseI	TTAA	2 cut(s)	146, 707
MslI	CAYNNNNRTG	4 cut(s)	166, 270, 437, 716
MspA1I	CMGCKG	2 cut(s)	358, 558
MspCI	CTTAAG	1 cut(s)	706
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	472
MvnI	CGCG	2 cut(s)	248, 358
MwoI	GCNNNNNNNGC	2 cut(s)	482, 491
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
NlaIII	CATG	6 cut(s)	220, 271, 283, 436, 667, 721
NlaIV	GGNNCC	2 cut(s)	40, 121
NmeAIII	GCCGAG	2 cut(s)	178, 762
NmuCI	GTSAC	2 cut(s)	232, 837
NruI	TCGCGA	1 cut(s)	248
NspI	RCATGY	3 cut(s)	271, 283, 721
OliI	CACNNNNGTG	2 cut(s)	166, 270
PagI	TCATGA	2 cut(s)	216, 663
PasI	CCCWGGG	1 cut(s)	471
PciI	ACATGT	2 cut(s)	267, 279
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdmI	GAANNNNTTC	2 cut(s)	43, 203
PfeI	GAWTC	2 cut(s)	14, 520
PkrI	GCNGC	4 cut(s)	193, 357, 360, 478
PleI	GAGTC	2 cut(s)	436, 442
PpsI	GAGTC	2 cut(s)	436, 442
PpuMI	RGGWCCY	1 cut(s)	112
PscI	ACATGT	2 cut(s)	267, 279
Psp124BI	GAGCTC	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	40, 121
PspPI	GGNCC	3 cut(s)	112, 120, 632
PspPPI	RGGWCCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	558
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	3 cut(s)	22, 284, 404
RsaNI	GTAC	3 cut(s)	21, 283, 403
RseI	CAYNNNNRTG	4 cut(s)	166, 270, 437, 716
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	146, 707
SatI	GCNGC	4 cut(s)	192, 356, 359, 477
Sau3AI	GATC	6 cut(s)	243, 368, 652, 660, 755, 869
Sau96I	GGNCC	3 cut(s)	112, 120, 632
SchI	GAGTC	2 cut(s)	436, 442
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	57, 180
SfaNI	GCATC	1 cut(s)	370
Sfr303I	CCGCGG	1 cut(s)	359
SgrBI	CCGCGG	1 cut(s)	359
SinI	GGWCC	2 cut(s)	112, 632
SmiMI	CAYNNNNRTG	4 cut(s)	166, 270, 437, 716
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	24, 295, 740
SsiI	CCGC	3 cut(s)	191, 356, 358
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	5 cut(s)	367, 586, 655, 758, 792
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	3 cut(s)	24, 295, 740
TatI	WGTACW	2 cut(s)	282, 402
TauI	GCSGC	3 cut(s)	194, 358, 361
TfiI	GAWTC	2 cut(s)	14, 520
Tru1I	TTAA	2 cut(s)	146, 707
Tru9I	TTAA	2 cut(s)	146, 707
TscAI	CASTG	2 cut(s)	570, 772
TseFI	GTSAC	2 cut(s)	232, 837
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	2 cut(s)	232, 837
TspDTI	ATGAA	2 cut(s)	205, 721
TspRI	CASTG	2 cut(s)	570, 772
Vha464I	CTTAAG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	112, 632
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	3 cut(s)	271, 283, 721
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	2 cut(s)	43, 203
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.