FvH4_3g42950

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007872
Physical Location & Seq
Reverse (-)
35881314 .. 35897968
16655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42950.t4

Sequence Viewer

Length: 11304 bp
ATGAAGTTGAAGCGAAGGAGGGCCGTGGAAGTGCCTCCGAAAATTAGATCCTTCATCAACAGTGTCACTGCTGTTCCTTTTGAGAATATAGAGGAGCCCCTAAAAGGTTTTGTCTGGGAGTACGATAAGGGTGATTTCCATCATTGGGTTGATCTGTTCAACCATTTTGATTCTTTTTTTGAGAAGCATATAAAATCTAGGAAGGATTTACAGGTTGAGGATAATTTTCTTGACTCTGATCCTCCTTTTCCAAGAGAAGCTCTTCTTCAAGTTCTCCGTGTAATAAGAATAATTTTGGAGAACTGCACTAATAAACACTTCTACAGTTCTTATGAGCATCTCTCATCTTTGCTTGCTTGCACTGATGCCGATGTGGTTGAGGCTTGCCTGCAGACTCTGGCTGCATTTTTGAAGAAAACAGTTGGAAAGTATTCCATTAGAGATGCTTCACTAAATTCAAAGTTGTTTGCTCTTGCACAAGGTTGGGGAGGAAAGGAAGAGGGTCTTGGATTAGTTGCCTGTGCGGTACAAGATGGTTGTGACCCCATTGCTTACGAGTTAGGATGCACCCTTCACTTTGAGTTTTATGCATTGGAAGATGCAAGTGAATTATCAACCACAGAACAACAGACCCAAGGTTTACAAATCATACATTTACCTAACATCAACACTCATCCAGAGTCTGATCTTGAGCTTTTGAGCAAGTTGATTGCCGAGTACAAAGTACCTAGTAGTTTGAGATTTGCTTTATTGACAAGATTGCGTTTTGCAAGGGCGTTTGGCTCTTTAGCTACTCGTCAACAGTATGCCTGCATTCGTCTGTATGCCTTCATAGTTCTTGTTCAAGCAAATAGTGATGCCGATGACCTTGTTTCTTTCTTTAACACTGAACCGGAGTTTGTCAATGAACTAGTGTCACTATTGAGCTTTGAAGATGTAGTTCCTGAGAAAATTCGAATTCTGTGTCTCCTTTCATTGGTTGCTCTTTCTCAAGATCGATCCCGACAGCCTAATGTTTTGACTGCTGTTACATCTGGTGGGCATCGTGGAATACTATCCAGCCTTATGCAGAAGGCCATTGATTCTGTCCTTAGTGATACATCAAAGTGGTCTGTTGTTTTTGCTGAGGCTCTGTTATCTCTTGTTACAGTTTTGGTTTCATCATCATCAGGTTGTTCGGCAATGCGAGAAGCTGGGTTCATCCCCACCCTTCTCCCTTTGCTTAAAGATACAAATCCACAGCACCTGCATTTGGTCAGCACATCTGTGCATATTTTAGAAGCTTTCATGGATTACAGTAATCCAGCTGCTGCATTGTTCCGGGACTTGGGGGGTTTAGATGATACCATCTCTCGCCTGCAGGTGGAAGTGTCTCAGGTAGAAAATGGTCCAAAGCAACAAGATGAAGATTCTAGTATCGCTGGGAGTAGTGCACAAGTAGTTGCAGGAACTTCCACTGAGATAGACAGCATGCAACCTCTGTATTCAGAACCTCTTGTTTCATATCATCGACGACTGCTGATGAAAGCTCTGCTGCGTGCTATATCTCTGGGAACTTATGCACCTGGAAACACTGCTCGTGTTTATGGCTCAGAGGAGAGTCTGTTGCCACAGTGCTTATGCATAATCTTTAAAAGGGCAAAAGATTTTGGTGGTGGGGTGTTTTCACTTGCAGCTTCTGTCATGAGTGATTTGATTCACAAAGATCCTACCTGTTTTCCAGTTTTAGATGAAGCAGGCCTGCCCTCTACCTTCCTCAATGCTATAATGGATGGTGTTCTTTGCTCAACCGAGGCCATTACATGCATCCCACAGTGTCTAGATGCTCTGTGTTTAAATAATAACGGTCTTCAGGCTGTCAAAGATCGCAATGCGTTGAGGTGCTTTGTGAAGATATTTACTTCAAGAACCTATTTGCGTGCTCTAACAAGTGATACACCTGTCTCCTTATCTAGTGGATTGGATGAATTAATGCGCCATGCTTCTTCATTACGTGGTCCTGGTGTGGACATGCTAATTGAGATTTTAAATGCCATTTCAAAAATTGGACACGGGGTTGATGCTTCTCTCACGTCAACTGAAGTTCCGTCTTCTTCTACTCCTGTTCCCATGGAAACTGATGGAGAAGAGAGGAATGTTGTCATGTCTGATGATAGGGAGTCATCCAAAATGGATAGTTCGGAGCAGGGAACTGAACCATCTTCTGATTCTGTAGTAGGAAATGCTGAACAATTGCTTCCTGATTGTGTAAGCAATGTTGCACGTCTTCTGGAAACTATACTTCAGAATGGTGACACTTGTCGTATATTTGTGGAGAAGAAGGGGATTGAAGCTGTCCTGCAGTTGTTTACCTTGCCTTTAATGCCTCTTTCTGCTTCAGTTGGTCAGAGTATATCTATTGCATTCAAGAACTTCTCACCACAGCATTCTGCTTCTTTGGCTCGAGCAGTATGTTCATTTTTGAGAGAGCATCTGAAATCAACAAATGAACTCTTAGTTTCAGTTGGTGGGACTCAACTTTCTTTGGTGGAATCTGCAAAGCAAACTAAGGTTTTGAAACAACTTTCCAGTCTTGAAGCTATTCTGTGTCTGTCTAATATTCTATTGAAAGGGACAACTACGGTGGTGTCGGAATTGGGTGCAGCAGATGCTGATGTATTGAAAGATCTTGGGAGCACATACAGGGAAATCCTCTGGCAAATATCTTTGTGTAATGATGTCAAGTCTGATGAGAAGATCACTGCTGAACAAGAACAAGACAATGCTGAGGCAGCTCCATCGAATGCTTCTGGAAGGGAGAGTGATGATGATACTAATATCCCAGTGGTGAGATACATGAACCCAGTCTCTATTAGGAATCAGCCCTTCTGGGGTGGAGAGCGTGAGTTCCTGTCAGTTGTTCGCAGTGGTGAAGGTTTGCACCGTCGTAGTACTCGGCACGGGATTACACGCATGAGGGGAGGAAGGACAGGCCGGCATTTGGAGGCTTTACATATTGATTCTGAATCTTCTTCCACAGTATCTGAGGCAACTACATCCCAGGATTTGAAAAAGAAAAGTCCTGATGTGCTTGTTACAGAAATTCTCAACAAGCTGGCTACCACTCTACGTTCCTTCTTCACAGCTCTTGTCAAGGGATTTACTTCACCTAATAGGCGTAGAGTTGACTCTGGATCATTGAGTTTGGCTTCAAAAACTCTTGGAACTGCCCTAGCTAAAGTGTATCTTGAGGCTCTTAGTTTCTGTGGACATTCTACTTCTGCTGGGCTTGATACTTCATTGTCAGTTAAGTGTCGATATCTTGGGAAAGTAGTGGATGATATGATGGCACTTACATTTGATAACAGACGGCGGACTTGTTATACTGCAACAATTAATAATTTCTATGTCCATGGTACCTTTAAGGAGCTGCTCACAACATTTGAAGCTACTAGTCAGTTGTTGTGGACCGTTCCATATGGTATGCCAACATCAGGCATTGATCATGAAAAGAATGGTGAAGGCAGTAAACTGTCCCATAGTTCGTGGCTGCTTGATACATTACAAAGCTATTGCCGCGTGCTGGAGTATTTTGTTAATTCTTCTTTGCTCTTATCTACAACCTCTGCATCCCAGGCACAGTTGCTTGTTCAGCCAGTTGCAGTTGGTCTATCAATTGGTCTTTTCCCTGTGCCAAGGGAACCAGAAGTTTTTGTTCGTATGCTGCAGTCTCAAGTTCTTGATGTAATACTTCCCATCTGGAACCACCCCATGTTTCCAAATTGTACTCCAGGATTTGTTGCTTCCATTGTTTCACTTGTTATGCATGTATATTCTGGTGTGGGAGATGTGAAGCAGAATCGCAGTGGCATTGCTGGCACTACAAACCAAAGATTCATGCCCCCACCACTTGATGAAGGTACAATTAGTACCATTATGGGTATGGGTTTTTCAAGGGCCAGAGCAGAAGAAGCTCTTAGGAGGGTGGAAACAAATAGTGTTGAAATGGCCATGGAGTGGCTTTGTAACCATCCCGAGGATCCTGTGCAGGAGGATGATGATCTGGCCCAGGCACTTGCTCTATCACTAGGACCTGAAACATCTAAAGCTGATAATGTTGAAAAGTCTGTAGATGTGCTGGCAGAAGAGAGTTGTGTGAAAGCTCCACCAATTGATGATATTCTTGCTGCATCAGTTAAGTTGTTTCAGAGCAGTGATACCATGGCTTTCCCATTGACAGATTTGCTTGTGACACTTGGCAATCGGAACAAAGGTGAAGACCGTCCTAGAGTTACATCTTATCTAATTCAGCAACTCAAACTTTGTCCATTGGATTTTTCTAAGGATACCAGTGCTTTGAGTATGTTATCACATGTTATAGCATTGCTGCTTTCTGAGGATGGAAGTACAAGGGAAATTGCTGCACAGAATGGTATTGTATCTGTTGCAGTAGATATCTTGATGAATTATAAGGCCAAAGAGGAGCCAGGCAATGAACTTCTTGTTCCAAAATGTATTAGTGCTCTACTGCTTATTTTGGATAACATGTTGCAATCAAGGCCCAGAATTTCTGAGAACATTGAAGAAACTCAGACTGGATCTCTGACTGAATTATCTGGAGATCGTGCTTCCTTGTCAATCCCTGGTGCAGTGACAGAGAAAAAAGAGGTTATGGATGCCCAGGAAAAAGATTCTGGCACTGGATTTGAGAAAATATTGGGGAAATCAACTGGTTATTTGACAATGGAAGAGAGTCAAAAGGTGCTAGCCGTTGCCTGTGATTTGATAAAGCAGCATGTCCCAGCTATGATCATGCAGGCTGTTCTACAGCTGTGTGCTCGTTTGACAAAAACACATGCACTTGCTTTGCAGTTTCTTGAAAATGGAGGATTGACGGCTCTTTTTGGTCTTCCTAGAAGTTGTTTTTTCCCTGGATATGATACTGTTGCATCTGCTATTGTTCGCCATCTTCTTGAAGATCCGCAGACACTGCAAACAGCAATGGAATTGGAAATTCGCCAAACACTGAGTGGCAACAGGCACGGTGCACGTACTTCTGCAAGGACATTCTTGACATCAATGGCACCTGTAATCTCTAGAGATCCAGTGGTTTTTATGAAAGCTGTTGCTGCTGTTTGTCAGTTGGAGACGTCAGCAGGTAGGACATTCATTGTCTTAATGAAGGAAAAAGAAAAGGAAAAGGACAAACCTAAGGCATCTGGTGGTGAGGCTGGATTATCTTCCAATGAATGTGTCCGCATTCCTGAAAATAAAGTACATGATGGATCAGGTAAATGCTTGAAAGGTCACAAGAAGATCCCTGCTAATCTTACTCAAGTGATTGATCAACTGCTTGAAATTGTCTTGAAATACTATTTCCCAAAGAGCCAGGAAGATTCTCTGAATGACCTATCTTCTATGGAGGTAGATGAACCTGCTACCAAGGTAAAGGGTAAATCAAAGGTTGATGAGACAAGGAAAGTGGAGTCTGGATCTGAAAGATCTGCAGGACTGGCTAAGGTAACATTTGTTCTCAAGTTACTGAGTGATATTCTTCTCATGTATGTACATGCAGTTGGGGTTATACTTAAACGGGATATGGAACTGACTCAATTGCGGGTAGCTAATCAACTGGAAAATCCTGGACAAGGTGGTATACTTCATCACGTTATTCATCGATTGCTTCCACTAACCATTGATAAATCTGCTGGACCTGATGAATGGAGAGACAAGTTGTCAGAAAAAGCTTCTTGGTTCCTGGTAGTTCTGTGTGGTCGTTCTGGTGAAGGGCGTAGAAGAGTAATTAGTGAACTTGTGAAAGCTTTATCATCATTTTCAAACATTGATAGTTGTTCTTCGAAGAGCATCATATTGCCAGATAAGAAGGTTTATGCTTTTGTGGATTTGGTGTACTCTATTTTGTCGAAAAATTCATCATCGAGCAACTTACCTGGTTCTGGGTTTTCACCAGACATAGCAAAAAGCATGATAGATGGGGGAATGATTCAGTGTCTGACTAGTATCCTACAAGTGATTGATTTGGATCATCCTGATGCTCCCAAAACTGTGAATCTCATACTCAAGGCTTTAGAAAGTTTAACAAGGGCTGCTAATGCTAGTGAGCAATATTTTAAATCTGATGAGACAAAGAAAAAATCCACGGTGTTGAATGGAAGATCTGATGATCAGGTAACTACTCCAGCTGATGATACATTAGGGCATAATCAGAATATAAGCAGTGAGCAGGACGTCAGAGATGCAGTACCAACTGAACAACAGGATCAAGGAACTTCTCAAAGTGAAGGTAATCCTGATGCAACTCCGAACCAGTCAGGGGAACATGATATGAGAATTGAAGTTGAAGGGCCATTGGCTTCTAACCAACCCATGGAGCTTGGGATGGATTTCATGCGTGAAGAGATGGAAGAAGGCAATGTGTTACACAACACTGACCAAATCGAAATGACTTTTCGTGTTGAAGGTAGGGCAGATGATGACATGGGTGATGAAGATGACGACATGGGTGATGATGGTGAGGATGATGAGGATGATGATGATGGAGAGGATGAAGATGAGGATATAGCAGAAGATGGTGGCGGCATGATGTCTCTGGCTGATACTGATGTGGAAGACCATGATGATACTGGCCTGGGAGATGATTATAATGATGAGATGATTGATGAAGATGATGATGATTTCCACGAGAATCGTGTCATAGAAGTGAGATGGAGGGAAGCCCTTGATGGGCTTGATCATTTACAGGTACTTGGGCAACCTGGAGCTGCAAGTGGACTGATTGATGTTGCTGCCGAACCTTTTGAAGGGGTTAATGTGGATGACCTTTTTGGTCTACGAAGGCCGTTAGGTTTTGATCGACGTCGTCAGACGAGTAGGTCTTCCTTTGAGCGATCTGTTACAGAAGCAAATGGCTTTCAACATCCTCTCCTTATAAGGCCTTCCCATTCTGGAGATCTGGTATCCATGTGGTCAGCTGGTGGAAATTCATCCCGGGACTTAGAAGCTCTATCATCAGGGAGCTTTGATGTAGCTCATTTCTACATGTTTGATGCTCCTGTTCTTCCATATGATCATGTCCCGAACAATCTTTTTGGTGACCGTTTGGGTGGTGCAGCACCGCCACCATTGACTGATTATTCTGTAGGTATGGATTCGCTGCAGTTAGCGGGACGGAGAGGCCCAGGTGATGGCCGGTGGACTGATGATGGCCAGCCTCAAGCAGGTGCTCATGCTGCTGCTATTGCTCAGGCAGTTGAGGAACAATTTATATCCCAATTGCGCAGTCTTGCTCCTGTTGACACCCCTGTTGAACCGCATTCTCAGAATTCAGGAGTGCAGGAGAAACAGCCAGATATGCCTCCTTCAACAGATAGTCAAGTAGTAGTAGATCACAGCCAACAAATTGAAGATCAGGACCAAGACAGGGGTGTTGAAGCAGCACATCAAGTTATCTCCACACCTGAGGGTATTCCTTCCCAAGAACAAGTCAATCCAGAATCTTTTGTCGAAAATGCTGTGGACTGTTTGCAGGGACCTGAACCAATGTCAATCCAGGCACCTTCTTTGGACAGTGCACGAAATGATAACATGGACATTGGAGAGGGGAATGGCGCTGCTGCGCAAGTAGGGTCTATGCCAGCATTTGTCAACTCATCTGCAAGCACAAGGGTTGATTTACAACAGGATGAGGTTTCTGAAGTGCCTTCTGATGTCAACAATGCTACAGTAGAAGCTATGGGTCAGGATGGATCTTCAGGCAATCTAGTTGGTGATATGCCGGTAAATTTCGGCTTCAATGTGTCTAATTCAGGTGATTCTCATACTATGGTCCGAGAAAATGTTGATGTTGACATGAATTGCATTGATGAAGTAAATCAAACTGGCCATTCCATGCCTGCTTCTGAAAATGGTACAGATGACCCATCAAGCCAAAACACATTGATTGCTCCAGAAGCTAATCAGGCTGAACAAGTTAACAATGAGACTCCTGGTGCTAATGCGATTGACCCTACATTCTTGGAGGCTTTACCTGAAGATTTGAGGGCGGAGGTTCTTGCTTCACAGCAAGCTCAGTCTGTTCAACCTCCTCCTTATGCGCCACCTTCTGCGGACGACATTGATCCTGAGTTTTTAGCTGCCCTTCCGCCGGATATCCAAGCAGAAGTTTTGGCTCAACAAAGAGCACAAAGAGTTGCACAACAGGCTGAAGGACAACCTGTTGACATGGACAATGCTTCTATAATTGCTACATTTCCTGCTGATTTACGAGAAGAGGTACTTTTAACTTCTTCAGAAGCAGTGTTGTCTGCATTACCTTCTCCACTACTGGCTGAAGCTCAAATGCTAAGAGATCGAGCGATGAGTCACTATCAGGCTCGCAGCCTCTTCGGGAGCAGCCACAGGCTGAATAATAGGAGAAATGGATTGGGTTTTGACCGGCATACTGTAATGGACAGGGGTGTTGGAGTCACAATTGGCCGGAGGGCAGTTTCTTCTATTACAGATAGCTTAAAGGTTAAGGAAATTGAAGGCGAGCCACTTCTAGATGCAAATTCATTAAAAGCCTTAATAAGGCTTCTACGATTAGCGCAGCCCCTTGGTAAAGGACTCTTGCAGAGGCTCTTCTTAATCCTGTGTACACACAGTGTTACAAGAGCAACTTTAGTACGTCAATTGCTCGATATGATCAAGCCTGAGGCTGAAGGCTCAGTCACTGGATTAGCTACCATTAATTCCCAACGGCTTTATGGTTGCCACTCAAATGTTGTATATGGCAGATCTCAGTTGTTAGATGGTCTTCCTCCATTGGTGTTGCGTCGGATCCTTGAGATCTTGACTTATTTAGCTACAAATCATTCTACAGTGGCAAATATGTTATTCTATTTTAATTTCTCAGGTGTTCCTCAGCCTTTAAGTCCCTTAAATATGGAAACCAAGAAGGACAAAGGCAAAGAGAAAGTTGGAGAAGGAGGATTTTCATCTAATCCTGTCAACGCACAGGATGGGGACGTTCCCCTGATATTATTTCTGAAGCTCCTTAATCGACCTCACTTCTTGCGTAGCACTGCTCATCTTGAGCAGGTCATGGACCTGCTTCAGGTGGTTGTTGATACTTCAGCTGCAAAACTAGAGGTCCATTCTCAATCTGAAAGGCTCGAGGGGAATTCCCAAAATTTACCTGTAAGTGAAACTTCTGGAGATGGTCAGAACAGTCATCCTGTAGAACCAGAACCTCATCAAGAGGTTAAACCTGATGGTGTTGGATCATCAACTTCAGATGCAACCAGGAGTACAGATACCTATAATATTTTCTTGAAACTGCCAGAATCCGATTTGCATAATCTTTGCAGTCTTCTTGGTCGTGAGGGGCTTTCAGATAAAGTATATATGCTTTCCAGTGAGGTGCTGAAGAAGTTGGCCTCAGTTGCAGTGCCCCATCGGAAGTTTTTTATCTCAGAGCTTTCAGAATTAGCTCATGGCTTGAGTGCCTCAGCTGTTGGCGAGCTTGTCACTCTCCGGAATACACAGATGTTGGGTTTAAGTGCCGGATCTATGGCTGGGTCGGCAATCTTACGTGTACTGCAATCACTTTGCTCACTCACTTCACCCAGTACAAATGAGAATTCAGGTTTGGAGAATGATGCAGAGCAGGAGGAGCATGCCACCATGTGGAAGCTAAATATTGCACTTGAGCCATTGTGGCAAGAATTGAGTGACTGTATAAGCGCCACTGAAACACAGTTGGGCCAGAGCTCTTTTTGTCCAACCATGTCCACTATAAATGTTGGGGACCATGTACAAGGTTCCTCTTCTTCATCTCCTCTGCCTCCTGGAACCCAGAGACTACTTCCTTTTATGGAGGCTTTTTTTGTTTTGTGTCAGAAGCTACAAGCAAACCACTCTATCACGCTGCAAGATCAAGCTAATGTGACTGCAAGAGAAGTCAAAGAGTCAGGTGGAAATTCAGATCCTTCAGTTACTAAATTCCATGGCTGTGGGGATTCTCAGAGGAAGCTTGATGGTGCTGTCACATTTACAAGGTTTGCCGAGAAGCATCGTCGTCTTCTGAATGCATTTATTAGACAGAATCCGGGCCTATTGGAAAAATCCCTTAGCATGATGTTGAAGGCACCAAGGCTAATTGATTTTGATAACAAGAGAGCATATTTCCGGTCAAGAATTAGGCAACAGCATGAGCAACATCTCTCTGGTCCGCTGCGAATAAGTGTTCGTCGGGCTTATGTCTTGGAGGATTCTTACAATCAGTTGAGAATGCGTCCTAATCAGGACATGAAGGGACGATTAAATGTACAATTCCAAGGGGAAGAGGGTATTGACGCTGGTGGTCTAACACGAGAATGGTATCAATTACTATCTAGGGTGATATTTGACAAAGGCGCATTGCTTTTTACTACTGTTGGAAACAATGCAACGTTCCAGCCAAACCCTAATTCTGTCTACCAGACGGAACATCTTTCTTACTTCAAGTTTGTTGGCCGTGTGGTTGCAAAGGCAGTATTTGATGGGCAACTTTTGGATGTTTATTTCACTCGATCTTTCTACAAGCACATACTTGGCGTAAAGGTGACATACCATGATATAGAAGCCGTGGATCCTGATTACTACAAGAATTTAAAATGGATGTTAGAGAATGATGTGAGTGATATTCCTGACCTGACGTTTAGCATGGATGCGGACGAAGAAAAGCATATTCTTTATGAGAAAAACCAGGTGACTGATTATGAGCTTAAACCTGGAGGAAGAAATATCAGGGTTACAGAAGAAACTAAGCACGAGTATGTAGACCTTGTAGCTGATCATATTTTGACAAATGCTATTCGTCCTCAAATCAATTCTTTCCTGGAGGGGTTCAATGAATTGGTGCCACGTGAGCTTATCTGGATTTTTAATGATAAAGAGCTTGAGCTACTTATCAGTGGTCTTCCGGAGATTGATTTGGATGACTTGAAGGCGAACACCGAGTACACTGGGTATACAGTAGCATCTAGTGTTGTGCAATGGTTTTGGGAGGTAGTTAAAAGTTTCAACAAGGAGGACATGGCAAGACTGCTTCAATTTGTGACTGGCACATCAAAGGTTCCACTGGAAGGTTTCAAAGCTTTGCAAGGCATTTCTGGTCCTCAGAGGTTTCAGATTCACAAGGCATATGGAGCTCCAGACAGGCTGCCCTCTGCTCATACATGCTTTAATCAACTAGACCTTCCTGAGTATACCTCTAAGGATCAGCTTCATGAACGATTGATGCTTGCTATTCATGAAGGGAGTGAAGGATTTGGCTTTGGTTGA

Protein Analysis

3768

Amino Acids

413.0

Weight (kDa)

4.94

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF908 PF06012 85 - 209 1.5e-12 Domain of Unknown Function (DUF908)
DUF908 PF06012 205 - 361 8.7e-27 Domain of Unknown Function (DUF908)
DUF913 PF06025 422 - 791 2.8e-93 Domain of Unknown Function (DUF913)
UBA_7 PF22562 1299 - 1343 6e-13 UBA-like domain
UBA PF00627 1302 - 1335 2.8e-06 UBA/TS-N domain
UBM PF14377 2664 - 2691 1.1e-08 Ubiquitin binding region
UBM PF14377 2701 - 2730 1.6e-10 Ubiquitin binding region
UBM PF14377 2737 - 2768 2e-07 Ubiquitin binding region
HECT PF00632 3457 - 3767 1.3e-95 HECT-domain (ubiquitin-transferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 4449, 6642, 6929
AarI CACCTGC 3 cut(s) 1254, 1351, 7208
AasI GACNNNNNNGTC 1 cut(s) 6871
AatII GACGTC 3 cut(s) 5132, 6231, 6859
Acc16I TGCGCA 2 cut(s) 7277, 7617
Acc36I ACCTGC 7 cut(s) 1254, 1351, 5126, 5422, 7208, 9067, 9096
Acc65I GGTACC 1 cut(s) 3395
AccB1I GGYRCC 5 cut(s) 3395, 5062, 7552, 10126, 10879
AccB7I CCANNNNNTGG 4 cut(s) 3996, 6367, 7184, 9666
AccI GTMKAC 6 cut(s) 5635, 6829, 10455, 10800, 10991, 11228
AccII CGCG 1 cut(s) 3558
AccIII TCCGGA 2 cut(s) 9513, 10942
AclI AACGTT 1 cut(s) 10430
AcoI YGGCCR 6 cut(s) 3987, 7186, 7204, 7879, 8473, 10492
AcvI CACGTG 1 cut(s) 10886
AcyI GRCGYC 3 cut(s) 5129, 6228, 6856
AdeI CACNNNGTG 3 cut(s) 5009, 8642, 9666
AflIII ACRYGT 4 cut(s) 4351, 4524, 7038, 9571
AhdI GACNNNNNGTC 1 cut(s) 5713
AhlI ACTAGT 3 cut(s) 910, 3431, 5996
AjiI CACGTC 2 cut(s) 2073, 2264
AjuI GAANNNNNNNTTGG 6 cut(s) 489, 521, 9611, 9643, 10432, 10464
AleI CACNNNNGTG 1 cut(s) 1265
Alw44I GTGCAC 3 cut(s) 1431, 5025, 7569
Ama87I CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
Aor13HI TCCGGA 2 cut(s) 9513, 10942
ApaLI GTGCAC 3 cut(s) 1431, 5025, 7569
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AseI ATTAAT 3 cut(s) 1970, 3375, 8727
Asp700I GAANNNNTTC 3 cut(s) 261, 430, 2580
Asp718I GGTACC 1 cut(s) 3395
AspLEI GCGC 8 cut(s) 1977, 7278, 7610, 7618, 8095, 8587, 9725, 10397
AsuC2I CCSGG 4 cut(s) 1322, 6988, 6989, 10089
AsuII TTCGAA 2 cut(s) 955, 5837
AsuNHI GCTAGC 1 cut(s) 4744
AvaI CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
AxyI CCTNAGG 3 cut(s) 5190, 7458, 8691
BaeGI GKGCMC 4 cut(s) 1435, 5029, 7573, 9432
BaeI ACNNNNGTAYC 4 cut(s) 1926, 1959, 6588, 6621
BalI TGGCCA 3 cut(s) 3989, 7206, 7881
BamHI GGATCC 3 cut(s) 4018, 8817, 10609
BanI GGYRCC 5 cut(s) 3395, 5062, 7552, 10126, 10879
BanII GRGCYC 3 cut(s) 99, 9752, 11173
BauI CACGAG 4 cut(s) 1578, 6680, 10350, 10790
BbrPI CACGTG 1 cut(s) 10886
BbvCI CCTCAGC 4 cut(s) 1125, 2766, 8901, 9487
BceAI ACGGC 8 cut(s) 8, 3365, 4733, 4890, 6823, 8753, 10479, 10589
BcgI CGANNNNNNTGC 4 cut(s) 2760, 2794, 8365, 8399
BciVI GTATCC 3 cut(s) 4318, 6011, 6967
BclI TGATCA 8 cut(s) 3481, 4788, 5323, 6163, 6730, 7066, 8682, 10813
BcnI CCSGG 4 cut(s) 1322, 6988, 6989, 10089
BcuI ACTAGT 3 cut(s) 910, 3431, 5996
BfoI RGCGCY 2 cut(s) 7611, 9726
BfuAI ACCTGC 7 cut(s) 1254, 1351, 5126, 5422, 7208, 9067, 9096
BfuI GTATCC 3 cut(s) 4318, 6011, 6967
BglI GCCNNNNNGGC 1 cut(s) 9697
BglII AGATCT 6 cut(s) 2665, 5480, 6155, 6949, 8774, 8826
BmcAI AGTACT 1 cut(s) 2932
BmeRI GACNNNNNGTC 1 cut(s) 5713
BmeT110I CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
BmgBI CACGTC 2 cut(s) 2073, 2264
BmrI ACTGGG 4 cut(s) 2816, 2837, 9600, 10995
BmtI GCTAGC 1 cut(s) 4748
BmuI ACTGGG 4 cut(s) 2816, 2837, 9600, 10995
BoxI GACNNNNGTC 1 cut(s) 2298
BplI GAGNNNNNCTC 4 cut(s) 326, 358, 11216, 11248
Bpu10I CCTNAGC 7 cut(s) 1125, 2766, 5496, 7242, 8901, 9487, 10109
Bpu14I TTCGAA 2 cut(s) 955, 5837
BpuMI CCSGG 4 cut(s) 1322, 6988, 6989, 10089
Bsa29I ATCGAT 2 cut(s) 997, 5656
BsaAI YACGTR 4 cut(s) 1994, 5030, 9572, 10886
BsaBI GATNNNNATC 5 cut(s) 138, 1233, 4038, 6021, 8974
BsaHI GRCGYC 3 cut(s) 5129, 6228, 6856
BsaWI WCCGGW 4 cut(s) 892, 9513, 10167, 10942
BsaXI ACNNNNNCTCC 6 cut(s) 1589, 1619, 6906, 6936, 6939, 6969
Bse118I RCCGGY 4 cut(s) 2973, 7188, 7774, 8433
Bse21I CCTNAGG 3 cut(s) 5190, 7458, 8691
Bse8I GATNNNNATC 5 cut(s) 138, 1233, 4038, 6021, 8974
BseAI TCCGGA 2 cut(s) 9513, 10942
BseCI ATCGAT 2 cut(s) 997, 5656
BseJI GATNNNNATC 5 cut(s) 138, 1233, 4038, 6021, 8974
BseRI GAGGAG 6 cut(s) 107, 1610, 4475, 8073, 9665, 9807
BseSI GKGCMC 4 cut(s) 1435, 5029, 7573, 9432
BseYI CCCAGC 5 cut(s) 1193, 1421, 3263, 4780, 9554
BsgI GTGCAG 7 cut(s) 289, 2661, 4046, 4386, 4647, 7128, 7352
Bsh1236I CGCG 1 cut(s) 3558
BshNI GGYRCC 5 cut(s) 3395, 5062, 7552, 10126, 10879
BshVI ATCGAT 2 cut(s) 997, 5656
BsiHKCI CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
BsmBI CGTCTC 1 cut(s) 5120
BsmI GAATGC 8 cut(s) 813, 2402, 2425, 2788, 5238, 7312, 10072, 10275
BsoBI CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
Bsp119I TTCGAA 2 cut(s) 955, 5837
Bsp13I TCCGGA 2 cut(s) 9513, 10942
Bsp1407I TGTACA 4 cut(s) 5545, 8633, 9793, 10306
Bsp19I CCATGG 6 cut(s) 2109, 3391, 3990, 4200, 6366, 9985
BspDI ATCGAT 2 cut(s) 997, 5656
BspEI TCCGGA 2 cut(s) 9513, 10942
BspFNI CGCG 1 cut(s) 3558
BspHI TCATGA 4 cut(s) 1683, 3484, 11248, 11272
BspMAI CTGCAG 6 cut(s) 393, 1362, 2343, 3708, 5488, 7158
BspMI ACCTGC 7 cut(s) 1254, 1351, 5126, 5422, 7208, 9067, 9096
BspOI GCTAGC 1 cut(s) 4748
BspQI GCTCTTC 3 cut(s) 267, 5834, 8624
BspT104I TTCGAA 2 cut(s) 955, 5837
BspT107I GGYRCC 5 cut(s) 3395, 5062, 7552, 10126, 10879
BsrFI RCCGGY 4 cut(s) 2973, 7188, 7774, 8433
BsrGI TGTACA 4 cut(s) 5545, 8633, 9793, 10306
BssAI RCCGGY 4 cut(s) 2973, 7188, 7774, 8433
BssNAI GTATAC 3 cut(s) 5636, 10992, 11229
BssNI GRCGYC 3 cut(s) 5129, 6228, 6856
BssSI CACGAG 4 cut(s) 1578, 6680, 10350, 10790
Bst1107I GTATAC 3 cut(s) 5636, 10992, 11229
Bst2BI CACGAG 4 cut(s) 1578, 6680, 10350, 10790
BstACI GRCGYC 3 cut(s) 5129, 6228, 6856
BstAPI GCANNNNNTGC 2 cut(s) 2648, 4969
BstAUI TGTACA 4 cut(s) 5545, 8633, 9793, 10306
BstBAI YACGTR 4 cut(s) 1994, 5030, 9572, 10886
BstBI TTCGAA 2 cut(s) 955, 5837
BstDSI CCRYGG 9 cut(s) 24, 2109, 3391, 3990, 4200, 6138, 6366, 9985, 10605
BstEII GGTNACC 1 cut(s) 7091
BstENI CCTNNNNNAGG 5 cut(s) 5625, 6798, 7215, 8566, 9092
BstFNI CGCG 1 cut(s) 3558
BstH2I RGCGCY 2 cut(s) 7611, 9726
BstHHI GCGC 8 cut(s) 1977, 7278, 7610, 7618, 8095, 8587, 9725, 10397
BstPAI GACNNNNGTC 1 cut(s) 2298
BstPI GGTNACC 1 cut(s) 7091
BstSLI GKGCMC 4 cut(s) 1435, 5029, 7573, 9432
BstUI CGCG 1 cut(s) 3558
BstXI CCANNNNNNTGG 1 cut(s) 9992
BstZ17I GTATAC 3 cut(s) 5636, 10992, 11229
Bsu15I ATCGAT 2 cut(s) 997, 5656
Bsu36I CCTNAGG 3 cut(s) 5190, 7458, 8691
BsuI GTATCC 3 cut(s) 4318, 6011, 6967
BsuTUI ATCGAT 2 cut(s) 997, 5656
BtgI CCRYGG 9 cut(s) 24, 2109, 3391, 3990, 4200, 6138, 6366, 9985, 10605
BtgZI GCGATG 1 cut(s) 8369
BtrI CACGTC 2 cut(s) 2073, 2264
BveI ACCTGC 7 cut(s) 1254, 1351, 5126, 5422, 7208, 9067, 9096
CciI TCATGA 4 cut(s) 1683, 3484, 11248, 11272
CfoI GCGC 8 cut(s) 1977, 7278, 7610, 7618, 8095, 8587, 9725, 10397
Cfr10I RCCGGY 4 cut(s) 2973, 7188, 7774, 8433
Cfr9I CCCGGG 1 cut(s) 6987
ClaI ATCGAT 2 cut(s) 997, 5656
CseI GACGC 3 cut(s) 8801, 10262, 10343
CsiI ACCWGGT 2 cut(s) 5929, 10725
CspCI CAANNNNNGTGG 4 cut(s) 2604, 2639, 5442, 5477
DraI TTTAAA 5 cut(s) 1633, 1836, 2028, 6112, 10632
DraIII CACNNNGTG 3 cut(s) 5009, 8642, 9666
DrdI GACNNNNNNGTC 1 cut(s) 6871
DriI GACNNNNNGTC 1 cut(s) 5713
DseDI GACNNNNNNGTC 1 cut(s) 6871
EaeI YGGCCR 6 cut(s) 3987, 7186, 7204, 7879, 8473, 10492
Eam1105I GACNNNNNGTC 1 cut(s) 5713
EciI GGCGGA 3 cut(s) 3367, 8057, 8130
Ecl136II GAGCTC 2 cut(s) 9750, 11171
Eco147I AGGCCT 2 cut(s) 1740, 6934
Eco24I GRGCYC 3 cut(s) 99, 9752, 11173
Eco32I GATATC 3 cut(s) 3299, 4435, 8149
Eco53kI GAGCTC 2 cut(s) 9750, 11171
Eco72I CACGTG 1 cut(s) 10886
Eco81I CCTNAGG 3 cut(s) 5190, 7458, 8691
Eco88I CYCGRG 4 cut(s) 2442, 4013, 6987, 9152
Eco91I GGTNACC 1 cut(s) 7091
EcoICRI GAGCTC 2 cut(s) 9750, 11171
EcoNI CCTNNNNNAGG 5 cut(s) 5625, 6798, 7215, 8566, 9092
EcoO109I RGGNCCY 2 cut(s) 4070, 7529
EcoO65I GGTNACC 1 cut(s) 7091
EcoRI GAATTC 4 cut(s) 957, 7321, 9160, 9619
EcoRV GATATC 3 cut(s) 3299, 4435, 8149
EcoT22I ATGCAT 5 cut(s) 592, 1625, 1808, 3807, 10072
EcoT38I GRGCYC 3 cut(s) 99, 9752, 11173
Esp3I CGTCTC 1 cut(s) 5120
FauI CCCGC 2 cut(s) 5589, 7156
FauNDI CATATG 3 cut(s) 3457, 7063, 11164
FbaI TGATCA 8 cut(s) 3481, 4788, 5323, 6163, 6730, 7066, 8682, 10813
FblI GTMKAC 6 cut(s) 5635, 6829, 10455, 10800, 10991, 11228
FriOI GRGCYC 3 cut(s) 99, 9752, 11173
FspI TGCGCA 2 cut(s) 7277, 7617
GlaI GCGC 8 cut(s) 1976, 7277, 7609, 7617, 8094, 8586, 9724, 10396
GsaI CCCAGC 5 cut(s) 1197, 1425, 3267, 4784, 9558
HaeII RGCGCY 2 cut(s) 7611, 9726
HgaI GACGC 3 cut(s) 8801, 10262, 10343
HhaI GCGC 8 cut(s) 1977, 7278, 7610, 7618, 8095, 8587, 9725, 10397
Hin1I GRCGYC 3 cut(s) 5129, 6228, 6856
Hin6I GCGC 8 cut(s) 1975, 7276, 7608, 7616, 8093, 8585, 9723, 10395
HinP1I GCGC 8 cut(s) 1975, 7276, 7608, 7616, 8093, 8585, 9723, 10395
HindIII AAGCTT 5 cut(s) 1281, 5724, 5799, 10010, 11115
HpaI GTTAAC 1 cut(s) 7972
Hpy99I CGWCG 7 cut(s) 1515, 2928, 6858, 6861, 8817, 10059, 10233
Hsp92I GRCGYC 3 cut(s) 5129, 6228, 6856
HspAI GCGC 8 cut(s) 1975, 7276, 7608, 7616, 8093, 8585, 9723, 10395
Kpn2I TCCGGA 2 cut(s) 9513, 10942
KpnI GGTACC 1 cut(s) 3399
KroI GCCGGC 1 cut(s) 2973
KroNI GCCGGC 1 cut(s) 2975
Ksp22I TGATCA 8 cut(s) 3481, 4788, 5323, 6163, 6730, 7066, 8682, 10813
KspAI GTTAAC 1 cut(s) 7972
LguI GCTCTTC 3 cut(s) 267, 5834, 8624
MabI ACCWGGT 2 cut(s) 5929, 10725
MfeI CAATTG 7 cut(s) 2231, 3654, 4149, 5591, 7271, 8469, 8669
MlsI TGGCCA 3 cut(s) 3989, 7206, 7881
MluNI TGGCCA 3 cut(s) 3989, 7206, 7881
MmeI TCCRAC 9 cut(s) 403, 2610, 5103, 8440, 8795, 8938, 9238, 9785, 10396
Mox20I TGGCCA 3 cut(s) 3989, 7206, 7881
Mph1103I ATGCAT 5 cut(s) 592, 1625, 1808, 3807, 10072
MroI TCCGGA 2 cut(s) 9513, 10942
MroNI GCCGGC 1 cut(s) 2973
MroXI GAANNNNTTC 3 cut(s) 261, 430, 2580
MscI TGGCCA 3 cut(s) 3989, 7206, 7881
MslI CAYNNNNRTG 8 cut(s) 1105, 1265, 6030, 6698, 8757, 9990, 10354, 10794
Msp20I TGGCCA 3 cut(s) 3989, 7206, 7881
MspA1I CMGCKG 7 cut(s) 1307, 4810, 6182, 6971, 9116, 9491, 10213
MunI CAATTG 7 cut(s) 2231, 3654, 4149, 5591, 7271, 8469, 8669
Mva1269I GAATGC 8 cut(s) 813, 2402, 2425, 2788, 5238, 7312, 10072, 10275
MvnI CGCG 1 cut(s) 3558
NaeI GCCGGC 1 cut(s) 2975
NciI CCSGG 4 cut(s) 1322, 6988, 6989, 10089
NcoI CCATGG 6 cut(s) 2109, 3391, 3990, 4200, 6366, 9985
NdeI CATATG 3 cut(s) 3457, 7063, 11164
NgoMIV GCCGGC 1 cut(s) 2973
NheI GCTAGC 1 cut(s) 4744
NmeAIII GCCGAG 3 cut(s) 739, 2914, 10069
NsbI TGCGCA 2 cut(s) 7277, 7617
NsiI ATGCAT 5 cut(s) 592, 1625, 1808, 3807, 10072
NspV TTCGAA 2 cut(s) 955, 5837
OliI CACNNNNGTG 1 cut(s) 1265
PaeI GCATGC 2 cut(s) 1474, 9659
PaeR7I CTCGAG 2 cut(s) 2442, 9152
PagI TCATGA 4 cut(s) 1683, 3484, 11248, 11272
PaqCI CACCTGC 3 cut(s) 1254, 1351, 7208
PceI AGGCCT 2 cut(s) 1740, 6934
PciI ACATGT 3 cut(s) 4351, 4524, 7038
PciSI GCTCTTC 3 cut(s) 267, 5834, 8624
PctI GAATGC 8 cut(s) 813, 2402, 2425, 2788, 5238, 7312, 10072, 10275
PdiI GCCGGC 1 cut(s) 2975
PdmI GAANNNNTTC 3 cut(s) 261, 430, 2580
PflFI GACNNNGTC 1 cut(s) 6858
PflMI CCANNNNNTGG 4 cut(s) 3996, 6367, 7184, 9666
PfoI TCCNGGA 5 cut(s) 1320, 3769, 5620, 9826, 10857
PmaCI CACGTG 1 cut(s) 10886
PmlI CACGTG 1 cut(s) 10886
Ppu21I YACGTR 4 cut(s) 1994, 5030, 9572, 10886
PpuMI RGGWCCY 2 cut(s) 4070, 7529
PscI ACATGT 3 cut(s) 4351, 4524, 7038
PshAI GACNNNNGTC 1 cut(s) 2298
PshBI ATTAAT 3 cut(s) 1970, 3375, 8727
PsiI TTATAA 3 cut(s) 4449, 6642, 6929
Psp124BI GAGCTC 2 cut(s) 9752, 11173
Psp1406I AACGTT 1 cut(s) 10430
Psp5II RGGWCCY 2 cut(s) 4070, 7529
PspCI CACGTG 1 cut(s) 10886
PspEI GGTNACC 1 cut(s) 7091
PspFI CCCAGC 5 cut(s) 1193, 1421, 3263, 4780, 9554
PspPPI RGGWCCY 2 cut(s) 4070, 7529
PspXI VCTCGAGB 2 cut(s) 2442, 9152
PsrI GAACNNNNNNTAC 4 cut(s) 5493, 5525, 10964, 10996
PstI CTGCAG 6 cut(s) 393, 1362, 2343, 3708, 5488, 7158
PsyI GACNNNGTC 1 cut(s) 6858
PvuII CAGCTG 6 cut(s) 1307, 4810, 6182, 6971, 9116, 9491
RseI CAYNNNNRTG 8 cut(s) 1105, 1265, 6030, 6698, 8757, 9990, 10354, 10794
SacI GAGCTC 2 cut(s) 9752, 11173
SapI GCTCTTC 3 cut(s) 267, 5834, 8624
SbfI CCTGCAGG 1 cut(s) 1362
ScaI AGTACT 1 cut(s) 2932
SdaI CCTGCAGG 1 cut(s) 1362
SexAI ACCWGGT 2 cut(s) 5929, 10725
Sfr274I CTCGAG 2 cut(s) 2442, 9152
SfuI TTCGAA 2 cut(s) 955, 5837
SlaI CTCGAG 2 cut(s) 2442, 9152
SmaI CCCGGG 1 cut(s) 6989
SmiMI CAYNNNNRTG 8 cut(s) 1105, 1265, 6030, 6698, 8757, 9990, 10354, 10794
SpeI ACTAGT 3 cut(s) 910, 3431, 5996
SphI GCATGC 2 cut(s) 1474, 9659
Sse8387I CCTGCAGG 1 cut(s) 1362
SseBI AGGCCT 2 cut(s) 1740, 6934
SspI AATATT 5 cut(s) 2599, 4695, 6107, 9304, 9679
SstI GAGCTC 2 cut(s) 9752, 11173
StuI AGGCCT 2 cut(s) 1740, 6934
TauI GCSGC 2 cut(s) 3558, 6579
TspGWI ACGGA 4 cut(s) 266, 2076, 7183, 10478
TspMI CCCGGG 1 cut(s) 6987
Tth111I GACNNNGTC 1 cut(s) 6858
Van91I CCANNNNNTGG 4 cut(s) 3996, 6367, 7184, 9666
VneI GTGCAC 3 cut(s) 1431, 5025, 7569
VspI ATTAAT 3 cut(s) 1970, 3375, 8727
XagI CCTNNNNNAGG 5 cut(s) 5625, 6798, 7215, 8566, 9092
XbaI TCTAGA 3 cut(s) 1819, 5075, 8539
XcmI CCANNNNNNNNNTGG 4 cut(s) 3919, 5006, 6620, 8741
XhoI CTCGAG 2 cut(s) 2442, 9152
XmaI CCCGGG 1 cut(s) 6987
XmiI GTMKAC 6 cut(s) 5635, 6829, 10455, 10800, 10991, 11228
XmnI GAANNNNTTC 3 cut(s) 261, 430, 2580
ZraI GACGTC 3 cut(s) 5130, 6229, 6857
ZrmI AGTACT 1 cut(s) 2932
Zsp2I ATGCAT 5 cut(s) 592, 1625, 1808, 3807, 10072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.