RchiOBHm_Chr5g0077001

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007872
Physical Location & Seq
Reverse (-)
82789491 .. 82805556
16066 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35163

Sequence Viewer

Length: 11334 bp
ATGAAGTTGAAGAGAAGGAGGGCCGTGGAAGTGCCTCCGAAAATTAGATCCTTCATCAACAGCGTCACTGCTGTTCCACTTGAGAATATAGAGGAACCTTTAAAAGGTTTTGTCTGGGAGTACGATAAGGGAGATTTCCATCATTGGGTTGATCTGTTCAACCATTTTGATTCATTTTTTGAGAAGCATATAAAATCTAGGAAGGACTTGCAGGTTGAGGATAATTTTCTCGACTCTGATCCTCCTTTTCCAAGAGAAGCTCTTCTTCAAGTTCTCCGCGTGATAAGAATAATTTTGGAGAACTGCACAAATAAACACTTCTACAGTTCATATGAGCAGCATCTCTCATCTTTGCTTGCTTGCACCGATGCGGATGTGGTTGAGGCTTGCCTGCAGACTCTGGCTGCATTTTTGAAGAAAACAGTAGGAAAGTATTCCATCAGAGATGCTTCACTAAATTCAAAGTTGTTTGCTCTTGCACAAGGTTGGGGAGGAAAGGAAGAGGGTCTTGGATTAATTGCCTGTGCAGTACAGGATGGTTGTGACCCTATTGCTTATGAGTTAGGATGCACCCTTCACTTTGAGTTTTATGCGTTGAAAGATGCAAGTGAATTACCAACCACAGAACAGCAGACCCAAGGTTTACAAATCATTCATTTACCTAACATCAACACTCATCCAGAGACTGATCTTGAGCTTTTGAGTAAGCTAATTGCCGAATACAAAGTACCCAGTAGTTTGAGATTTGCTTTATTGACAAGATTGCGTTTTGCAAGGGCTTTCGGCTCTTTAGCTACTCGTCAACAGTATGCCTGCATTCGTCTGTATGCCTTCATAGTTCTTGTTCAAGCAAATAGTGATGGCGATGACCTTGTTTCTTTCTTCAACACTGAACCGGAGTTTGTCAATGAACTAGTGTCATTATTGAGCTTGGAAGATGTAGTTCCTGAGAAAATTCGAATTCTATGTCTTCTTTCATTGGTTGCTCTTTCTCAAGATCGGGCCCGACAGCCTAATGTTTTGACTGCTGTCACATCTGGTGGGCATCGTGGAATCCTATCCAGCCTCATGCAGAAGGCCATTGATTCCGTCATCAGTGATACATCAAAGTGGTCTGTTGTTTTTGCTGAGGCTCTGTTATCTCTTGTTACAGTTTTGGTTTCATCATCATCCGGTTGTTCAGCCATGCGTGAAGCTGGATTTATCCCCACCCTTCTCCCTTTGCTTAAAGATACAAATCCACAGCACCTACATTTGGTCAGCACATCTGTGCATATTTTAGAAGCTTTTATGGATTACAGTAATCCAGCTGCTGCATTGTTCAGGGACTTGGGCGGTTTAGATGATACCATCTCTCGCCTGCAGCTGGAAGTGTCTCATGTAGAAAATGGGCCAAAACAACAAGATGAAGATTCTAGTACCTCTGGAAGTGCACAAGTAGTTGCAGGAACTTCCACTGAGATAGACAGCATGCAACCTCTGTATTCAGAACCTCTTGTTTCATATCATCGACGACTGCTGATGAAAGCTCTACTGCGTGCTATATCTCTGGGGACTTATGCACCTGGAAATACTGCCCGTGTTTATGGCTCGGAGGAGAGCCTATTGCCGCAATGCTTATGCATAATCTTTAAAAGGGCAAAAGATTTTGGTGGTGGGGTGTTTTCACTTGCGGCTTCTGTCATGAGTGATTTAATTCACAAAGATCCTACCTGTTTTCCAGTTTTAGATGAAGCAGGTCTTCCTTCTACCTTTCTGGATGCTATAATGGATGGCGTTCTTTGCTCAACAGAGGCCATTACATGCATCCCACAGTGTCTGGATGCCCTGTGTCTAAATAATAATGGTCTTCAGGCTGTGAAAGATCGCAATGCATTGAGGTGCTTTGTGAAGATATTTACTTCAAGAACCTATCTGCGTGCTCTAACAAGTGATACACCTGTCTCCCTATCTAGTGGATTGGATGAATTAATGCGCCATGCCTCCTCATTACGTGGTCCTGGTGTGGATATGCTAATTGAGATTTTAAATGTCATCTCAAAAATTGGACATGGGGGTGATTCTTTTCTCATGTCAACCGAACTTTTATCTTCTTCTACTCCTGTTCCCATGGAAACTGATGGAGAAGAAAGGAATGTAGTCATGTCAGATGATAGGGAGTCATCCAAGATGGATAGTTCGGAGCAGGGAACTGAAACATCTTCTGATTCTTTAGTGGGAAATGCTGAAGTATTGCTTCCTGATTGTGTGAGCAATGTTGCACGTCTTCTTGAAACTATACTTCAGAATGGTGACACTTGTCGTATATTTGTGGAGAAGAAGGGAATAGAAGCTGTCCTGCAGTTGTTTACCTTGCCTTTAATGCCTCTTTCTGTTTCAGTTGGTCAGAGTATATCTATTGCATTTAAAAACTTCTCACCACAACATTCTGCTTCTTTGGCTCGGGCGGTATGTTCATTTTTGAGAGAGCATCTGAAATCAACAAATGAACTCTTAGTTTCAGTTGGTGGGACTCAACTTTCTTTGGTGGAATCTGCAAAGCAAACTAAGGTTTTGAAGCATCTTTCCAGTCTTGAAGCTATTCTGTCTCTGTCTAATGTTCTATTGAAAGGGACGACTACTGTGGTGTCTGAACTGGGTGCAGCAGATGCTGATGTATTGAAAGATCTTGGGAGTACATACAGGGAAATCCTTTGGCAAATCTCTCTGTGTAATGATGTCAAGTCTGATGAGAAGATCAATGCTGAACAAGAACAAGACATTGCTGAGGCAGCTCCATCTAATGCTTCGGGAAGGGAGAGTGATGATGATGCTAATACTCCCATGGTGAGATACATGAACCCAGTTTCTATTAGGAATCAGCCCTTTTGGGGTGGAGAGCGTGAGTTCCTTTCAGTTGTTCGCAGTGGTGAAGGTTTGCACCGTCGTAGTACTCGGCATGGGATTACACGCATGAGAGGAGGAAGGACAGGCCGGCATTTGGAGGCTTTACATATTGATTCTGAATCTTCTTCCACAGTATCGGAGGCAACTACATCCCAGGATTTGAAAAAGAAAAGTCCTGATGTGCTTGTTACAGAAATTCTTAACAAGCTCGCTTCCACTCTACGTTCCTTCTTCACAGCTCTTGTCAAGGGATTCACATCACCAAATAGGCGTAGAGTTGACTCTGGATCATTGAGTTTGGCCTCAAAAACTCTTGGAACTGCCCTAGCTAAAGTTTATCTTGAGGCTCTTATTTTCCCTGGGCATTCTACTTCAGCTGGGCTTGATACTTCATTATCAGTCAAGTGTCGATACCTTGGAAAAGTTGTGGATGATATGATGGCACTTACATTTGATAGCAGACGACGCACTTGTTATACTGCAACAATTAATAATTTCTATGTCCATGGTACCTTTAAGGAGCTGCTCACAACGTTTGAAGCTACTAGTCAGTTGTTATGGACCCTACCATATTGTATGCCAACATCAGGCATTGATCAGGAAAAGACAGGTGAAGGCAGTAAACTGTCCCATAGTTCATGGCTGCTTGAGACTCTACAAAGCTATTGCCGTGTGCTGGAGTATTTTGTTAATTCTTCTTTACTCTTATCTACAACCTCTGCATCCCAGGCACAGTTGCTTGTTCAGCCAGTTGCAGTTGGTCTATCAATTGGGCTTTTTCCTGTGCCAAGGGAACCAGAAGTTTTTGTTCGTATGCTTCAGTCTCAAGTTCTTGATGTAATACTTCCTATCTGGAACCACCCCATGTTTCCAAATTGTAGTCCAGGATTCGTTGCTTCCATTGTTTCACTTGTTATGCATGTATATTCTGGTGTGGGAGATGTGAAGCAGAATCGCAGTGGCATTGCTGGAACTGCAAACCAAAGATTCATGCCTCCACCACTTGATGAAGCTACTATTACTACCATTATGGAGATGGGTTTTTCAAGGGTCAGAGCAGAAGAAGCGCTTAGGAGGGTGGAAACAAATAGCGTTGAAATGGCCATGGAGTGGCTTTGCAGCCATGCTGAGGATCCTGTGCAGGAGGATGATGAACTGGCCCGGGCACTTGCTCTATCACTGGGAAATTCATCTGAAACATCTAAAGCTGATAATGTTGACAAGTCTGTAGATGTGCTGGCAGAAGAGAGTTGTGTGAAAGCTCCTCCAGTTGATGATATTCTTGCTGCATCAGTTAAGTTGTTTCAGAGCAGTGACACAATGGCCTTCCCATTGACAGATTTGCTTGTGACACTTAGCAATCGGAACAAAGGTGACGACCGTCCTAAAGTTGCATCTTATCTAATTCAGCAGCTCAAGCTTTGTCCATTGGATTTTTCTAAGGATACCAGTTCTTTGAGTATGTTATCACATGTCATAGCATTGCTGCTTTCTGAGGATGGAAGTACAAGGGAAATTGCTGCACAGAATGGTATTGTGTCTGCTGCAGTAGATATCTTAATGAATTTTAAGGCCAAAGACGAGTCAGGCAATGAACTTCTTGTTCCAAAATGTATTAGTGCTCTACTGCTTATTTTGGATAACATGTTGCAATCAAGGCCCAGAATTTCTGAGAACATTGAAGAGACTCAGACAGGATCTCTGTCTGAACTATCTGGAGAGCGTACTTCCTTGTCAATCCCTGATGCAGTTACAGAGAAAAAACAGGATACGGATGCCCAGGAAAAAGATAGTGGCACTGGATTTGAGAAAATATTGGGCAAATCAACTGGTTATTTGACTATGGAAGAGAGTCAAAAGGTGCTGGCCGTTGCCTGTGATTTGATAAAGCAGCATGTCCCAGCTATGATCATGCAGGCTGTTTTACAGCTGTGTGCTCGTTTGACGAAAACTCATGCTCTTGCTTTGCAGTTTCTTGAACATGGAGGATTAGCGGCTCTTTTTGGCCTTCCCAGAAGTTGTTTTTTCCCTGGATATGACACTGTTGCATCTGCTATTGTTCGCCATCTCCTTGAAGATCCGCAAACACTGCAAACAGCTATGGAATTGGAAATTCGCCAAACACTGAGTGGCAACAGGCATGGTGCACGTACTTCTGCAAGGACATTTTTGACATCAATGGCACCTGTAATCTCTAGAGATCCGGTTGTTTTTATGAAAGCTGCTGCTGCTGTTTGTCAGTTGGAGACATCAGCAGGTAGGACATTCATTGTCTTAATGAAGGAAAAAGAAAAGGAAAAGGACAAACCTAAAGCATCTGGTGGTGAGGTTGGATTATCTTCCAATGAATCTATCCGTATTCCTGAAAATAAAGTACATGATGGATCAGGTAAATGCTTGAAAGGTCACAAGAAGATCCCTGCTAATCTTACTCAAGTGATTGATCAGCTGCTTGAAATTGTTTTGAAATACTATTTTCCAAAGAGCCAGGAAGATTGTCAGAATAACCTGTCTTCTATGGAGGTAGATGAACCTGCTACCAAGGTAAAGGGTAAATCAAAGGTTGATGAGACAAGGAAAGTGGAGTCTGAATCTGAAAGATCTGCAGGGCTGGCGAAGGTAACATTTGTTCTCAAGTTACTGAGTGATATTCTTCTCATGTATGTACATGCAGTTGGTGTTATACTTAAACGGGATTTGGAATTGGCTCAATTACGGGTAGCTAATCAACTGGAAGGTCCTGGACATGGTGGTATACTTCATCATGTGATTCATCGATTGCTTCCACTCACCATTGATAAATCTGCTGGACCTGATGAATGGAGAGACAAGTTATCTGAAAAAGCTTCTTGGTTCCTGGTAGTTCTGTGTGGTCGTTCTGGTGAAGGGCGTAGAAGAGTAATTAATGAGCTTGTGAAAGCATTATCATCATTTTCAAACATTGATGGTAATTCTTCGAAGAGCATCTTATTGCCAGATAAAAAGGTGTATGCTTTTGTGGATTTGGTGTACTCTATTTTGTCTAAAAATTCATCATCAAGCAACTTACCTGGTACGGGGTTTTCACCTGACATAGCAAAAAGCATGATAGATGGGGGAATGATTCAGTGTCTGACTAGTATTCTCCAGGTGATTGATTTGGACCATCCTGATGCTCCCAAAACTGTGAATCTCATACTCAAGGCTTTAGAAAGTCTAACCAGGGCTGCTAATGCTAGTGAGCAATATTTTAAATCTGATGAGACAAACAAGAAAAAGTCCATGGTGTTAAATAGAAGATCTGATGATCAGGTAACTACTCCAGCTGATGATACATTGGGGCATAATCAGAATACAAGCAGTGAGCAGGATGTCAGAGATGCAGTGCCAACTGAACAACAGGATCAAGGAACTTCTCAAAGTGAAGGTAATCCTGATGCAACTCCGAACCAGTCAGGGGAACATGATATGAGAATTGAAGTTGAAGGACCATTGGCTTCTAACCAACCCATGGAGCTTGGGATGGATTTTATGCGTGAAGAGATGGAAGAAGGCAATGTGTTACACAACAATGACCAAATTGAAATGACTTTTCGTGTTGAGGGTAGGGCAGATGATGACATGGGTGATGAAGATGATGACATGGGTGATGATGGTGAGGATGATGAGGATGATGATGATGGAGAGGATGAGGATGAGGATATAGCAGAAGATGGTGGCGGCATGATGTCTCTGGCTGATACTGATGTGGAAGACCATGATGATACTGGCCTGGGAGATGATTATAATGATGAGATGATTGATGAAGATGATGATGATTTCCATGAGAATCGTGTCATAGAAGTGAGATGGAGGGAAGCCCTTGACGGGCTTGATCATTTACATGTACTTGGGCAACCTGGAGCTGCAAGTGGTCTGATTGATGTTGCTGCCGAACCTTTTGAAGGGGTTAATGTGGATGACCTTTTTGGTCTACGAAGGCCGTTAGGTTTTGATCGACGTCGTCAGACGAGTAGGTCTTCCTTTGAGCGATCTGTTGCAGAAGCAAATGGCTTTCAACATCCTCTCCTTGTAAGGCCTCCCCAGTCTGGAGATTTGGTATCCATGTGGTCAGCAGGTGGAAATTCATCCCGGGACTTAGAAGCTCTATCATCAGGGAGCTTTGATGTAGCTCATTTCTACATGTTTGATGCTCCTGTTCTTCCATATGATCATGTTCCAAGCAATCTTTTCGGTGACCGTTTGGGTGGTGCAGCCCCGCCACCATTGACTGATTATTCTGTAGGTATGGATTCATTGCAGTTATCGGGACGAAGAGGCCCAGGTGATGGCCGGTGGACTGATGATGGCCAGCCTCAAGCAGGTGCTCATGCTGCTGCTATTGCTCAGGCAGTTGAGGAACAGTTTATATCCCAATTGCGCAGTCTTGCTCCTGTTGACACCCCTGTTGAACCACATTCTCAGAATTCAGTAGTGCAGGAGAAACAGCCAGATGTGCCTCCTTCAACTGATGGTCAAGTAGTAGTAGATCGTGGTAACACCACCAGCCAACAAGTTGAAGATCAGCACCAAGACAGGGGTGTTGAGGTGACACATCAAGATATCTCCAGGCCTGAGGGTATTCCTCGCCAAGAACAAGTCAATCAAGAATCCTTTGTCGAAGATGCAGGGGGCTGTTTGCAGGAACCTGAACCAATGTCAATCCAGGCACCTTCTTTGGACAGTACACGAAATGATAACATGGACATTGGGGAGGGTAATGGCACTGCTGAGCAAGAAGGGTCAATGCCGGAATTTGTCAACTCATCTGCAAGCACAAGGGTTGATTTGCAACAGGAAGGGGGTTCTGAAGTGCCTTCTAATGTCAATGATGCTACAGTAGAAGCTATGGGTCAGGATGGATCTTCAGGCAATCAAGCTGGTGACATGCCAGCAAATTTCGGCTTCAATGTGTCTAATTCAGGTGATTCTCATACTTCTCTGGTCCCAGAAAATGTTGATGTTGACATGAATTGCATTGATGAAGTAAATCAAACTGGCCATCCCATGCCTGCTTTTGAAAATGGTACAGATGAGCCGTCAAGCCAAAACACATTGGTTGCTCCAGAAGCTAATCAGGCTGAACAAGTTACTTTGAACAATGAGGCTCCTGGTGCTAATGCAATTGACCCTACATTCTTGGAGGCTTTACCTGAAGAGTTGAGAGCGGAGGTTCTTGCTTCACAGCAAGCTCAGTCAGTTCAACCTCCTCCTTATGCGCCACCTTCTGCGGATGACATTGATCCTGAGTTTTTAGCCGCCCTTCCTCCGGATATTCAAGCAGAAGTTTTGGCTCAACAAAGAGCACAAAGAGTTGCACAACAGGCTGAAGGACAACCTGTTGACATGGACAATGCTTCAATAATTGCTACTTTTCCTGCTGATTTACGGGAAGAGGTACTTTTAACTTCTTCAGAAGCAGTTTTGTCTGCATTGCCTTCTCCACTACTGGCTGAAGCTCAAATGCTAAGAGATCGAGCAATGAGTCATTATCAGGCTCGCAGCCTTTTCGGGAGCAGCCACAGGCTGAATAATAGGAGAAATGGATTGGGTTTTGACCGGCATACAGTAATGGACAGGGGTGTTGGAGTCACAATTGGCCGGAGAGCAGTTTCTTCTATTACAGATAGCTTAAAGGGCAAGGAAAATGAAGGCGAGCCACTTCTAGATGCAAATTCATTGAAAGCCTTAATTAGGCTTCTACGATTAGCACAGCCCCTTGGCAAAGGACTCTTGCAGAGGCTCTTCTTAATCCTTTGTACACACAGTGTTACAAGAGCAATTTTAGTGCGTCTTTTGCTCGATTTGATCAAGCCTGAGGCTGAAGGCTCAGTCAGTGGATTAGCTACTATTAATTCCCAAAGGCTTTATGGTTGCCACTCAAATGTTGTATATGGCAGATCTCAGTTGTTAGATGGTCTTCCTCCCTTGGTGTTGCGTCGGATCCTTGAGATCTTGACTTATTTAGCTACAAATCATTCTGCAGTGGCAAATATGTTATTCTACTTTGATTTCTCAGGTGTTCCTCAGTCTTTAAGTCCCTTAAATATGGATACCAAGAAGGACAAAGGCAAAGAGAAAATCGGAGAAGGAGGATTTTCATCTAATCCTGTCAACACCCAGGATGGGGATGTTCCCCTGATATTGTTTCTGAAGCTCCTTAATCGACCTCATTTCTTGCGTAGCACTGCTCATCTTGAGCAGGTCATGGACCTGCTTCAGGTTGTTGTTGATAATTCAGCTTCAAAATTAGAGGTCCATTCTCCCTCTGAAAGGGTTGATGGGAATTCCCAAAATCTATCTATAAGTGAAACTTCTGGAGATGGTCAGAATGGTCGTCCTGTGGAACCAGAATCTCAGCAAGAGGTTAAACCTGATGGTGTTGGATCATCAACTTCAGATGCAAACAAAAGTACAGATACCCATAGTATTTTCTTGAAGCTGCCAGAATCCGATTTGCATAATCTTTGCAGTCTTCTTGGTCGTGAGGGGCTTTCAGATAAAGTTTATATGCTTTCCAGTGAGGTGCTGAAGAAGTTGGCCTCAGTTGCAGTGACCCATCGAAAGTTCTTTATCTCAGAGCTTTCAGAATTAGCTCATGGTTTGAGTGCCTCAGCTGTCAGCGAGCTTGTCACTCTCCGGAATACACAGATGTTGGGTTTGAGTGCTGGTTCTATGGCTGGGTCGGCAATCTTACGAGTATTGCAATCACTTTGCTCACTCACTTCACCTGGTACAAATGAGAATTCAGTTTTGGAGAATGATGCAGAGCAGGAGGAGCATGCCACCATGTGGAAGCTAAATATTGCACTTGAGCCATTGTGGCAAGAATTGAGTGACTGTATAAGTGCCACTGAAACACAGTTGGGCCAGAGCTCTTTTTGTCCAACCATGTCCACTATAAATATTGGGGACCATGTACAAGGTTCCTCTTCTTCATCTCCTCTTCCTCCTGGAACCCAGAGACTGCTTCCTTTTATGGAGGCATTTTTTGTGTTGTGTCAAAAGCTACAAGCAAACCACTCTATTACACTGCAAGATCAAGCTAATGTGACTGCAAGAGAAGTCAAAGAGTCTGCTGGAAATTCAGATCCTTCAGGTACTAAGTTTTATAGCTGTGGGGATTCTCAGAGGAAGCTTGATGGTGCTGTCACATTTACAAGGTTTGCAGAGAAGCATCGCCGTCTTTTGAATGCATTTATCAGACAGAATCCAGGGCTGTTGGAGAAATCCCTTACTATGATGTTGAAGGCACCACGGCTAATTGATTTTGATAACAAGAGAGCATATTTCCGATCAAGAATTAGGCAACAGCATGAGCAACATCTCTCCGGTCCGCTGCGAATAAGTGTTCGTCGTGCTTATGTTTTGGAAGATTCTTACAATCAGTTGAGAATGCGTCCTAATCAGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTATTGATGCTGGTGGTCTAACGCGAGAATGGTATCAATTACTATCAAGGGTTATATTTGACAAAGGTGCATTGCTTTTCACTACTGTCGGAAACAATGCAACTTTCCAGCCAAACCCCAATTCTGTATACCAGACGGAACATCTTTCTTACTTTAAATTTGTGGGCCGCGTGGTTGCAAAGGCAGTATTTGATGGGCAACTTTTGGATGTTTATTTCACTCGATCCTTCTACAAGCACATACTTGGTGTAAAGGTGACATACCATGATATAGAAGCCGTGGATCCTGATTACTACAAGAATTTGAAATGGATGTTAGAGAATGATGTGAGTGATATTCCTGACCTGACGTTTAGCATGGATGCGGATGAAGAAAAGCATATTCTTTATGAGAAAAACCAGGTGACTGATTATGAGCTTAAACCTGGAGGACGAAATATCAGGGTTACGGAAGAAACTAAGCACGAGTATGTAGACCTTGTAGCTGATCATATTTTGACAAATGCTATTCGTCCACAAATTAATTCTTTCTTGGAGGGGTTCAATGAATTGGTTCCACGCGAGCTTATCTCGATTTTTAATGATAAAGAGCTTGAGCTACTTATCAGTGGTCTTCCGGAGATTGATTTGGATGACTTGAAGGCAAACACCGAGTACACTGGCTATACAGCAGCATCTAGTGTTGTACAATGGTTTTGGGAGGTGGTTAAATGTTTCAACAAGGAGGACATGGCAAGACTGCTTCAATTTGTAACTGGCACATCAAAGGTTCCATTGGAAGGTTTCAAGGCTTTGCAAGGCATCTCTGGTCCTCAGAGGTTTCAGATTCACAAGGCATATGGAGCTCCTGACAGGCTGCCCTCTGCTCATACATGCTTTAATCAACTAGACCTTCCTGAGTATACCTCTAAGGATCAGCTTCATGAACGGTTGATGCTTGCTATTCATGAAGGGAGTGAAGGATTTGGCTTTGGCTGA

Protein Analysis

3777

Amino Acids

414.3

Weight (kDa)

4.95

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF908 PF06012 85 - 161 3.6e-12 Domain of Unknown Function (DUF908)
DUF908 PF06012 206 - 361 2.1e-26 Domain of Unknown Function (DUF908)
DUF913 PF06025 422 - 790 4.6e-91 Domain of Unknown Function (DUF913)
UBA_7 PF22562 1298 - 1342 1.4e-13 UBA-like domain
UBA PF00627 1298 - 1334 1.2e-07 UBA/TS-N domain
UBM PF14377 2673 - 2700 2.1e-08 Ubiquitin binding region
UBM PF14377 2710 - 2739 1.6e-10 Ubiquitin binding region
UBM PF14377 2746 - 2777 2e-07 Ubiquitin binding region
HECT PF00632 3466 - 3776 6.6e-96 HECT-domain (ubiquitin-transferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 6651
AarI CACCTGC 2 cut(s) 6971, 7217
AasI GACNNNNNNGTC 1 cut(s) 6880
AatII GACGTC 1 cut(s) 6868
Acc16I TGCGCA 1 cut(s) 7286
Acc36I ACCTGC 8 cut(s) 202, 1727, 5132, 5428, 6971, 7217, 9097, 9126
Acc65I GGTACC 1 cut(s) 3395
AccB1I GGYRCC 4 cut(s) 3395, 5068, 7573, 10156
AccB7I CCANNNNNTGG 4 cut(s) 3996, 6376, 7193, 9696
AccBSI CCGCTC 1 cut(s) 8072
AccI GTMKAC 5 cut(s) 5641, 6838, 10485, 10830, 11258
AccII CGCG 4 cut(s) 279, 10381, 10527, 10917
AccIII TCCGGA 3 cut(s) 8173, 9543, 10972
AclI AACGTT 1 cut(s) 3419
AcoI YGGCCR 6 cut(s) 3987, 4752, 7195, 7213, 7903, 8503
AcyI GRCGYC 1 cut(s) 6865
AdeI CACNNNGTG 3 cut(s) 5015, 8672, 9696
AfeI AGCGCT 1 cut(s) 3954
AflIII ACRYGT 4 cut(s) 4357, 4530, 6748, 7047
AhlI ACTAGT 3 cut(s) 913, 3431, 6002
AjiI CACGTC 1 cut(s) 2264
AjuI GAANNNNNNNTTGG 6 cut(s) 492, 524, 9641, 9673, 10462, 10494
AleI CACNNNNGTG 1 cut(s) 1268
Alw21I GWGCWC 9 cut(s) 1435, 1924, 4510, 4825, 5035, 7234, 8212, 9782, 11203
Alw44I GTGCAC 2 cut(s) 1431, 5031
AlwNI CAGNNNCTG 7 cut(s) 400, 686, 1313, 1819, 2651, 5998, 9871
Ama87I CYCGRG 3 cut(s) 2442, 4047, 6996
Aor13HI TCCGGA 3 cut(s) 8173, 9543, 10972
Aor51HI AGCGCT 1 cut(s) 3954
ApaI GGGCCC 1 cut(s) 1006
ApaLI GTGCAC 2 cut(s) 1431, 5031
ArsI GACNNNNNNTTYG 2 cut(s) 952, 984
AseI ATTAAT 6 cut(s) 515, 1970, 3375, 5790, 8757, 10878
Asp700I GAANNNNTTC 4 cut(s) 261, 433, 2580, 10908
Asp718I GGTACC 1 cut(s) 3395
AspLEI GCGC 4 cut(s) 1977, 3955, 7287, 8125
AsuC2I CCSGG 4 cut(s) 4048, 4049, 6997, 6998
AsuII TTCGAA 2 cut(s) 958, 5843
AvaI CYCGRG 3 cut(s) 2442, 4047, 6996
AxyI CCTNAGG 2 cut(s) 7479, 8721
BaeGI GKGCMC 4 cut(s) 1006, 1435, 4054, 5035
BaeI ACNNNNGTAYC 4 cut(s) 1926, 1959, 6597, 6630
BalI TGGCCA 3 cut(s) 3989, 7215, 7905
BamHI GGATCC 3 cut(s) 4018, 8847, 10639
BanI GGYRCC 4 cut(s) 3395, 5068, 7573, 10156
BanII GRGCYC 3 cut(s) 1006, 9782, 11203
BauI CACGAG 1 cut(s) 10820
Bbv12I GWGCWC 9 cut(s) 1435, 1924, 4510, 4825, 5035, 7234, 8212, 9782, 11203
BbvCI CCTCAGC 4 cut(s) 1128, 2766, 4014, 9517
BceAI ACGGC 8 cut(s) 8, 3540, 4739, 6832, 7927, 10071, 10178, 10619
BcgI CGANNNNNNTGC 4 cut(s) 7078, 7112, 8395, 8429
BciVI GTATCC 4 cut(s) 4324, 4648, 6976, 8950
BclI TGATCA 8 cut(s) 3481, 4794, 5329, 6172, 6739, 7075, 8712, 10843
BcnI CCSGG 4 cut(s) 4048, 4049, 6997, 6998
BcuI ACTAGT 3 cut(s) 913, 3431, 6002
BfoI RGCGCY 1 cut(s) 3956
BfuAI ACCTGC 8 cut(s) 202, 1727, 5132, 5428, 6971, 7217, 9097, 9126
BfuI GTATCC 4 cut(s) 4324, 4648, 6976, 8950
BglI GCCNNNNNGGC 1 cut(s) 9727
BglII AGATCT 5 cut(s) 2665, 5486, 6164, 8804, 8856
BlpI GCTNAGC 1 cut(s) 7635
BmcAI AGTACT 1 cut(s) 2932
BmeT110I CYCGRG 3 cut(s) 2442, 4047, 6996
BmgBI CACGTC 1 cut(s) 2264
BmrI ACTGGG 5 cut(s) 726, 2645, 2837, 4076, 6943
BmuI ACTGGG 5 cut(s) 726, 2645, 2837, 4076, 6943
BoxI GACNNNNGTC 3 cut(s) 1028, 2298, 4266
BplI GAGNNNNNCTC 4 cut(s) 10910, 10942, 11246, 11278
Bpu10I CCTNAGC 6 cut(s) 1128, 2766, 3956, 4014, 7251, 9517
Bpu1102I GCTNAGC 1 cut(s) 7635
Bpu14I TTCGAA 2 cut(s) 958, 5843
BpuMI CCSGG 4 cut(s) 4048, 4049, 6997, 6998
Bsa29I ATCGAT 1 cut(s) 5662
BsaAI YACGTR 2 cut(s) 1994, 5036
BsaBI GATNNNNATC 4 cut(s) 138, 1236, 3142, 9004
BsaHI GRCGYC 1 cut(s) 6865
BsaWI WCCGGW 7 cut(s) 895, 1172, 5089, 8173, 9543, 10235, 10972
BsaXI ACNNNNNCTCC 4 cut(s) 6915, 6945, 6948, 6978
Bse118I RCCGGY 3 cut(s) 2973, 7197, 8463
Bse21I CCTNAGG 2 cut(s) 7479, 8721
Bse8I GATNNNNATC 4 cut(s) 138, 1236, 3142, 9004
BseAI TCCGGA 3 cut(s) 8173, 9543, 10972
BseCI ATCGAT 1 cut(s) 5662
BseJI GATNNNNATC 4 cut(s) 138, 1236, 3142, 9004
BseRI GAGGAG 7 cut(s) 1610, 1975, 2973, 4140, 8103, 9695, 9837
BseSI GKGCMC 4 cut(s) 1006, 1435, 4054, 5035
BseYI CCCAGC 3 cut(s) 3263, 4786, 9584
BsgI GTGCAG 7 cut(s) 289, 546, 2661, 4046, 4392, 7137, 7361
Bsh1236I CGCG 4 cut(s) 279, 10381, 10527, 10917
Bsh1285I CGRYCG 1 cut(s) 4267
BshNI GGYRCC 4 cut(s) 3395, 5068, 7573, 10156
BshVI ATCGAT 1 cut(s) 5662
BsiEI CGRYCG 1 cut(s) 4267
BsiHKAI GWGCWC 9 cut(s) 1435, 1924, 4510, 4825, 5035, 7234, 8212, 9782, 11203
BsiHKCI CYCGRG 3 cut(s) 2442, 4047, 6996
BsmI GAATGC 4 cut(s) 816, 3250, 10102, 10305
BsoBI CYCGRG 3 cut(s) 2442, 4047, 6996
Bsp119I TTCGAA 2 cut(s) 958, 5843
Bsp120I GGGCCC 1 cut(s) 1002
Bsp13I TCCGGA 3 cut(s) 8173, 9543, 10972
Bsp1407I TGTACA 4 cut(s) 5551, 8663, 9823, 11041
Bsp1720I GCTNAGC 1 cut(s) 7635
Bsp19I CCATGG 6 cut(s) 2109, 2823, 3391, 3990, 6147, 6375
BspDI ATCGAT 1 cut(s) 5662
BspEI TCCGGA 3 cut(s) 8173, 9543, 10972
BspFNI CGCG 4 cut(s) 279, 10381, 10527, 10917
BspHI TCATGA 3 cut(s) 1683, 11278, 11302
BspMAI CTGCAG 6 cut(s) 396, 1365, 2343, 4435, 5494, 8890
BspMI ACCTGC 8 cut(s) 202, 1727, 5132, 5428, 6971, 7217, 9097, 9126
BspQI GCTCTTC 3 cut(s) 267, 5840, 8654
BspT104I TTCGAA 2 cut(s) 958, 5843
BspT107I GGYRCC 4 cut(s) 3395, 5068, 7573, 10156
BsrBI CCGCTC 1 cut(s) 8072
BsrFI RCCGGY 3 cut(s) 2973, 7197, 8463
BsrGI TGTACA 4 cut(s) 5551, 8663, 9823, 11041
BssAI RCCGGY 3 cut(s) 2973, 7197, 8463
BssNAI GTATAC 3 cut(s) 5642, 10486, 11259
BssNI GRCGYC 1 cut(s) 6865
BssSI CACGAG 1 cut(s) 10820
Bst1107I GTATAC 3 cut(s) 5642, 10486, 11259
Bst2BI CACGAG 1 cut(s) 10820
BstACI GRCGYC 1 cut(s) 6865
BstAPI GCANNNNNTGC 2 cut(s) 2648, 4975
BstAUI TGTACA 4 cut(s) 5551, 8663, 9823, 11041
BstBAI YACGTR 2 cut(s) 1994, 5036
BstBI TTCGAA 2 cut(s) 958, 5843
BstDSI CCRYGG 9 cut(s) 24, 2109, 2823, 3391, 3990, 6147, 6375, 10160, 10635
BstEII GGTNACC 1 cut(s) 7100
BstENI CCTNNNNNAGG 6 cut(s) 102, 6807, 7224, 8596, 9122, 9175
BstFNI CGCG 4 cut(s) 279, 10381, 10527, 10917
BstH2I RGCGCY 1 cut(s) 3956
BstHHI GCGC 4 cut(s) 1977, 3955, 7287, 8125
BstMCI CGRYCG 1 cut(s) 4267
BstPAI GACNNNNGTC 3 cut(s) 1028, 2298, 4266
BstPI GGTNACC 1 cut(s) 7100
BstSLI GKGCMC 4 cut(s) 1006, 1435, 4054, 5035
BstUI CGCG 4 cut(s) 279, 10381, 10527, 10917
BstZ17I GTATAC 3 cut(s) 5642, 10486, 11259
Bsu15I ATCGAT 1 cut(s) 5662
Bsu36I CCTNAGG 2 cut(s) 7479, 8721
BsuI GTATCC 4 cut(s) 4324, 4648, 6976, 8950
BsuTUI ATCGAT 1 cut(s) 5662
BtgI CCRYGG 9 cut(s) 24, 2109, 2823, 3391, 3990, 6147, 6375, 10160, 10635
BtgZI GCGATG 2 cut(s) 879, 10067
BtrI CACGTC 1 cut(s) 2264
BveI ACCTGC 8 cut(s) 202, 1727, 5132, 5428, 6971, 7217, 9097, 9126
CaiI CAGNNNCTG 7 cut(s) 400, 686, 1313, 1819, 2651, 5998, 9871
CciI TCATGA 3 cut(s) 1683, 11278, 11302
CfoI GCGC 4 cut(s) 1977, 3955, 7287, 8125
Cfr10I RCCGGY 3 cut(s) 2973, 7197, 8463
Cfr9I CCCGGG 2 cut(s) 4047, 6996
ClaI ATCGAT 1 cut(s) 5662
CpoI CGGWCCG 1 cut(s) 10238
CseI GACGC 5 cut(s) 52, 3360, 8684, 8831, 10292
CsiI ACCWGGT 3 cut(s) 5935, 9634, 10755
CspCI CAANNNNNGTGG 2 cut(s) 5448, 5483
CspI CGGWCCG 1 cut(s) 10238
DraI TTTAAA 6 cut(s) 102, 1633, 2028, 2407, 6118, 10513
DraIII CACNNNGTG 3 cut(s) 5015, 8672, 9696
DrdI GACNNNNNNGTC 1 cut(s) 6880
DseDI GACNNNNNNGTC 1 cut(s) 6880
EaeI YGGCCR 6 cut(s) 3987, 4752, 7195, 7213, 7903, 8503
Ecl136II GAGCTC 2 cut(s) 9780, 11201
Eco147I AGGCCT 2 cut(s) 6943, 7477
Eco24I GRGCYC 3 cut(s) 1006, 9782, 11203
Eco32I GATATC 2 cut(s) 4441, 7468
Eco47III AGCGCT 1 cut(s) 3954
Eco53kI GAGCTC 2 cut(s) 9780, 11201
Eco81I CCTNAGG 2 cut(s) 7479, 8721
Eco88I CYCGRG 3 cut(s) 2442, 4047, 6996
Eco91I GGTNACC 1 cut(s) 7100
EcoICRI GAGCTC 2 cut(s) 9780, 11201
EcoNI CCTNNNNNAGG 6 cut(s) 102, 6807, 7224, 8596, 9122, 9175
EcoO109I RGGNCCY 1 cut(s) 5624
EcoO65I GGTNACC 1 cut(s) 7100
EcoRI GAATTC 4 cut(s) 960, 7330, 9190, 9649
EcoRV GATATC 2 cut(s) 4441, 7468
EcoT22I ATGCAT 5 cut(s) 1625, 1808, 1876, 3807, 10102
EcoT38I GRGCYC 3 cut(s) 1006, 9782, 11203
FauI CCCGC 1 cut(s) 7131
FauNDI CATATG 3 cut(s) 331, 7072, 11194
FbaI TGATCA 8 cut(s) 3481, 4794, 5329, 6172, 6739, 7075, 8712, 10843
FblI GTMKAC 5 cut(s) 5641, 6838, 10485, 10830, 11258
FriOI GRGCYC 3 cut(s) 1006, 9782, 11203
FspI TGCGCA 1 cut(s) 7286
GlaI GCGC 4 cut(s) 1976, 3954, 7286, 8124
GsaI CCCAGC 3 cut(s) 3267, 4790, 9588
HaeII RGCGCY 1 cut(s) 3956
HgaI GACGC 5 cut(s) 52, 3360, 8684, 8831, 10292
HhaI GCGC 4 cut(s) 1977, 3955, 7287, 8125
Hin1I GRCGYC 1 cut(s) 6865
Hin6I GCGC 4 cut(s) 1975, 3953, 7285, 8123
HinP1I GCGC 4 cut(s) 1975, 3953, 7285, 8123
HincII GTYRAC 9 cut(s) 803, 2076, 3166, 4105, 7303, 7666, 7870, 8248, 9019
HindII GTYRAC 9 cut(s) 803, 2076, 3166, 4105, 7303, 7666, 7870, 8248, 9019
HindIII AAGCTT 4 cut(s) 1284, 4304, 5730, 10040
Hpy99I CGWCG 7 cut(s) 1515, 2928, 3354, 6867, 6870, 8847, 10263
HpyCH4IV ACGT 7 cut(s) 1993, 2263, 3109, 3419, 5035, 6865, 10706
HpySE526I ACGT 7 cut(s) 1993, 2263, 3109, 3419, 5035, 6865, 10706
Hsp92I GRCGYC 1 cut(s) 6865
HspAI GCGC 4 cut(s) 1975, 3953, 7285, 8123
Kpn2I TCCGGA 3 cut(s) 8173, 9543, 10972
KpnI GGTACC 1 cut(s) 3399
KroI GCCGGC 1 cut(s) 2973
KroNI GCCGGC 1 cut(s) 2975
Ksp22I TGATCA 8 cut(s) 3481, 4794, 5329, 6172, 6739, 7075, 8712, 10843
LguI GCTCTTC 3 cut(s) 267, 5840, 8654
MabI ACCWGGT 3 cut(s) 5935, 9634, 10755
MaeII ACGT 7 cut(s) 1993, 2263, 3109, 3419, 5035, 6865, 10706
MbiI CCGCTC 1 cut(s) 8072
MfeI CAATTG 4 cut(s) 3654, 7280, 8028, 8499
MlsI TGGCCA 3 cut(s) 3989, 7215, 7905
MluNI TGGCCA 3 cut(s) 3989, 7215, 7905
MmeI TCCRAC 8 cut(s) 5109, 5197, 8470, 8825, 9268, 9815, 10107, 10426
Mox20I TGGCCA 3 cut(s) 3989, 7215, 7905
Mph1103I ATGCAT 5 cut(s) 1625, 1808, 1876, 3807, 10102
MroI TCCGGA 3 cut(s) 8173, 9543, 10972
MroNI GCCGGC 1 cut(s) 2973
MroXI GAANNNNTTC 4 cut(s) 261, 433, 2580, 10908
MscI TGGCCA 3 cut(s) 3989, 7215, 7905
Msp20I TGGCCA 3 cut(s) 3989, 7215, 7905
MspA1I CMGCKG 8 cut(s) 1310, 1366, 3263, 4816, 5335, 6191, 9521, 10243
MunI CAATTG 4 cut(s) 3654, 7280, 8028, 8499
Mva1269I GAATGC 4 cut(s) 816, 3250, 10102, 10305
MvnI CGCG 4 cut(s) 279, 10381, 10527, 10917
NaeI GCCGGC 1 cut(s) 2975
NciI CCSGG 4 cut(s) 4048, 4049, 6997, 6998
NcoI CCATGG 6 cut(s) 2109, 2823, 3391, 3990, 6147, 6375
NdeI CATATG 3 cut(s) 331, 7072, 11194
NgoMIV GCCGGC 1 cut(s) 2973
NmeAIII GCCGAG 1 cut(s) 2914
NsbI TGCGCA 1 cut(s) 7286
NsiI ATGCAT 5 cut(s) 1625, 1808, 1876, 3807, 10102
NspV TTCGAA 2 cut(s) 958, 5843
OliI CACNNNNGTG 1 cut(s) 1268
PaeI GCATGC 2 cut(s) 1474, 9689
PagI TCATGA 3 cut(s) 1683, 11278, 11302
PaqCI CACCTGC 2 cut(s) 6971, 7217
PasI CCCWGGG 1 cut(s) 3245
PceI AGGCCT 2 cut(s) 6943, 7477
PciI ACATGT 4 cut(s) 4357, 4530, 6748, 7047
PciSI GCTCTTC 3 cut(s) 267, 5840, 8654
PctI GAATGC 4 cut(s) 816, 3250, 10102, 10305
PdiI GCCGGC 1 cut(s) 2975
PdmI GAANNNNTTC 4 cut(s) 261, 433, 2580, 10908
PflFI GACNNNGTC 1 cut(s) 6867
PflMI CCANNNNNTGG 4 cut(s) 3996, 6376, 7193, 9696
PfoI TCCNGGA 3 cut(s) 3769, 5626, 9856
Ppu21I YACGTR 2 cut(s) 1994, 5036
PpuMI RGGWCCY 1 cut(s) 5624
PscI ACATGT 4 cut(s) 4357, 4530, 6748, 7047
PshAI GACNNNNGTC 3 cut(s) 1028, 2298, 4266
PshBI ATTAAT 6 cut(s) 515, 1970, 3375, 5790, 8757, 10878
PsiI TTATAA 1 cut(s) 6651
Psp124BI GAGCTC 2 cut(s) 9782, 11203
Psp1406I AACGTT 1 cut(s) 3419
Psp5II RGGWCCY 1 cut(s) 5624
PspEI GGTNACC 1 cut(s) 7100
PspFI CCCAGC 3 cut(s) 3263, 4786, 9584
PspOMI GGGCCC 1 cut(s) 1002
PspPPI RGGWCCY 1 cut(s) 5624
PsrI GAACNNNNNNTAC 2 cut(s) 5499, 5531
PstI CTGCAG 6 cut(s) 396, 1365, 2343, 4435, 5494, 8890
PstNI CAGNNNCTG 7 cut(s) 400, 686, 1313, 1819, 2651, 5998, 9871
PsyI GACNNNGTC 1 cut(s) 6867
PvuII CAGCTG 7 cut(s) 1310, 1366, 3263, 4816, 5335, 6191, 9521
Rsr2I CGGWCCG 1 cut(s) 10238
RsrII CGGWCCG 1 cut(s) 10238
SacI GAGCTC 2 cut(s) 9782, 11203
SapI GCTCTTC 3 cut(s) 267, 5840, 8654
ScaI AGTACT 1 cut(s) 2932
SexAI ACCWGGT 3 cut(s) 5935, 9634, 10755
SfuI TTCGAA 2 cut(s) 958, 5843
SmaI CCCGGG 2 cut(s) 4049, 6998
SpeI ACTAGT 3 cut(s) 913, 3431, 6002
SphI GCATGC 2 cut(s) 1474, 9689
SrfI GCCCGGGC 1 cut(s) 4049
SseBI AGGCCT 2 cut(s) 6943, 7477
SspI AATATT 4 cut(s) 4701, 6113, 9709, 9811
SstI GAGCTC 2 cut(s) 9782, 11203
StuI AGGCCT 2 cut(s) 6943, 7477
TaiI ACGT 7 cut(s) 1996, 2266, 3112, 3422, 5038, 6868, 10709
TauI GCSGC 6 cut(s) 1612, 1676, 4883, 6588, 8165, 10527
TspGWI ACGGA 5 cut(s) 1078, 4673, 5231, 10508, 10820
TspMI CCCGGG 2 cut(s) 4047, 6996
Tth111I GACNNNGTC 1 cut(s) 6867
Van91I CCANNNNNTGG 4 cut(s) 3996, 6376, 7193, 9696
VneI GTGCAC 2 cut(s) 1431, 5031
VspI ATTAAT 6 cut(s) 515, 1970, 3375, 5790, 8757, 10878
XagI CCTNNNNNAGG 6 cut(s) 102, 6807, 7224, 8596, 9122, 9175
XbaI TCTAGA 2 cut(s) 5081, 8569
XcmI CCANNNNNNNNNTGG 4 cut(s) 3919, 5012, 6629, 8771
XmaI CCCGGG 2 cut(s) 4047, 6996
XmiI GTMKAC 5 cut(s) 5641, 6838, 10485, 10830, 11258
XmnI GAANNNNTTC 4 cut(s) 261, 433, 2580, 10908
ZraI GACGTC 1 cut(s) 6866
ZrmI AGTACT 1 cut(s) 2932
Zsp2I ATGCAT 5 cut(s) 1625, 1808, 1876, 3807, 10102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.