Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007872

Physical Location & Seq

Genomic Coordinates Reverse (-)

62327282 .. 62330997

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGAGGAGGAGAAGATCATCACCACCGGAGCCACTCCCGCTTCTGGCATTGACGCCGGTGAAAGAAGAAGACGACCCCAGAACAAATTGGCAGTTGGTGACCGCTGCTTCTGAGCGCTACGGACTCCCAGATGGTTGGTGCGTTGAGGAAATCCCCCGTCGCTTTAGCCGCTCCCGTCCCGCCCGAGTTGACAGGTATTTCATTGAGCCTGACACGGGACAGAAGTTTCGTTCGCTAGTAGCTGTCCACAGATATCTAACAGGTGGACAAGTTGATACACATGCCACTATGCAATTTAAACCACACACCATGAGGTGTAGTTCTTCCTTTGTACTACCAGATGGTTGGGAAATTGAGGAAAAGCCACGAAAGAATACTAATACTGGTCACAGTGACAAGTATTATATTGAGCCAGGAACTGGAAGGCGGTTCCGTTCTTTAGTAGCTGTTGAGAGATACCTAACAGAAGAAAATGAACACACTCCACTTCAGGCATTGATACCTGCCAATAAGTTGATTCTTTCAAGTGGATCCAGCAGCCAGAAGAAAAAGATTCGGTCCCTGAAATTTGTTTCTAAGAATTCATCACATTCAAACCCTGCAGATCATTTTAGTAGTCCCAAGAAAGAAATTCTCCCAGAAATCAGTAGACCTTCGCAGCTCAATATTAGCAGCCCACCAACAAAAGTTAAATGGGTCCTCGTTGGTCCTGGGGGGAATAATTGGAACCCCTTCATGGATGATTCTAGAGTCGCCGATTCTGTAAAGCAAAAGTGGTCTGAGATTTTCAAATCATCCATCTATGACGAAAACATTAAGGCACCGTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

278

Amino Acids

31.75

Weight (kDa)

9.64

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	40 - 92	2.3e-07	Methyl-CpG binding domain
MBD	PF01429	111 - 162	4.2e-10	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55860 AT1G70320
fragaria_vesca	FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 FvH4_3g42950
malus_domestica	MD03G1027100.v1.1 MD11G1031000.v1.1
prunus_persica	Prupe.6G024400_v2.0.a1 Prupe.6G024400_v2.0.a1
pyrus_communis	pycom03g02210 pycom11g02630
rosa_chinensis	RchiOBHm_Chr5g0077001
rosa_laevigata	RLG00000036641
rosa_multiflora	Rmu_sc0003323.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005140
rosa_rugosa	Rorug05G0450000 Rorug05G0450000 Rorug05G0450100
rosa_samantha	Rh5AG504800 Rh5BG526500 Rh5CG550300 Rh5DG538700
rosa_wichuraiana	Rw5G047160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	5 cut(s)	41, 105, 172, 183, 430
AclWI	GGATC	2 cut(s)	528, 541
AcsI	RAATTY	3 cut(s)	569, 583, 633
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	336
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	46, 218, 422, 739
AgsI	TTSAA	3 cut(s)	528, 597, 793
AjnI	CCWGG	2 cut(s)	415, 712
AluBI	AGCT	3 cut(s)	245, 449, 664
AluI	AGCT	3 cut(s)	245, 449, 664
AlwI	GGATC	2 cut(s)	528, 541
AlwNI	CAGNNNCTG	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	186
Aor51HI	AGCGCT	1 cut(s)	119
ApeKI	GCWGC	4 cut(s)	107, 540, 661, 675
ApoI	RAATTY	3 cut(s)	569, 583, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	561, 700, 710
AsuHPI	GGTGA	3 cut(s)	15, 73, 112
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	3 cut(s)	561, 700, 710
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	823
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	4 cut(s)	94, 552, 673, 687
BccI	CCATC	3 cut(s)	128, 338, 809
BciT130I	CCWGG	2 cut(s)	417, 714
BfaI	CTAG	2 cut(s)	239, 750
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	5 cut(s)	108, 172, 541, 662, 676
BlsI	GCNGC	5 cut(s)	109, 173, 542, 663, 677
Bme1390I	CCNGG	2 cut(s)	417, 714
Bme18I	GGWCC	3 cut(s)	561, 700, 710
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	561, 700, 710
BmiI	GGNNCC	7 cut(s)	33, 434, 535, 563, 701, 731, 825
BmrFI	CCNGG	2 cut(s)	417, 714
BpiI	GAAGAC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	713
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 218, 422, 739
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	391, 427
BseBI	CCWGG	2 cut(s)	417, 714
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	2 cut(s)	748, 797
BseLI	CCNNNNNNNGG	4 cut(s)	46, 218, 422, 739
BseMII	CTCAG	2 cut(s)	105, 774
BseNI	ACTGG	2 cut(s)	391, 427
BseRI	GAGGAG	2 cut(s)	22, 25
BseXI	GCAGC	4 cut(s)	94, 552, 673, 687
BshNI	GGYRCC	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	29, 59
BslFI	GGGAC	4 cut(s)	165, 234, 547, 606
BslI	CCNNNNNNNGG	4 cut(s)	46, 218, 422, 739
BsmFI	GGGAC	4 cut(s)	165, 234, 547, 606
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	17, 533, 607
BspACI	CCGC	5 cut(s)	41, 105, 172, 183, 430
BspCNI	CTCAG	2 cut(s)	106, 775
BspLI	GGNNCC	7 cut(s)	33, 434, 535, 563, 701, 731, 825
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	2 cut(s)	528, 541
BspT107I	GGYRCC	1 cut(s)	823
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	391, 427
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	3 cut(s)	17, 533, 607
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	417, 714
Bst4CI	ACNGT	2 cut(s)	395, 828
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	114, 579, 783
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	748, 797
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	20, 536, 610
BstMBI	GATC	3 cut(s)	17, 533, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 171
BstNI	CCWGG	2 cut(s)	417, 714
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	415, 712
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	4 cut(s)	94, 552, 673, 687
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	138, 348
BstYI	RGATCY	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	748, 797
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	561, 700, 710
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	284, 313, 739
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	114, 579, 783
DpnI	GATC	3 cut(s)	19, 535, 609
DpnII	GATC	3 cut(s)	17, 533, 607
DraI	TTTAAA	1 cut(s)	301
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	3 cut(s)	561, 700, 710
Eco47III	AGCGCT	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	700
EcoO65I	GGTNACC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	415, 712
EcoRV	GATATC	1 cut(s)	257
FaeI	CATG	3 cut(s)	287, 316, 742
FaiI	YATR	6 cut(s)	285, 293, 314, 408, 740, 807
FaqI	GGGAC	4 cut(s)	165, 234, 547, 606
FatI	CATG	3 cut(s)	283, 312, 738
FauI	CCCGC	2 cut(s)	48, 190
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	5 cut(s)	108, 172, 541, 662, 676
FokI	GGATG	2 cut(s)	755, 784
Fsp4HI	GCNGC	5 cut(s)	108, 172, 541, 662, 676
FspBI	CTAG	2 cut(s)	239, 750
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	5 cut(s)	108, 172, 541, 662, 676
HaeII	RGCGCY	1 cut(s)	121
HapII	CCGG	2 cut(s)	29, 59
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	287, 316, 742
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	6 cut(s)	126, 520, 556, 746, 753, 761
HpaII	CCGG	2 cut(s)	29, 59
HphI	GGTGA	3 cut(s)	15, 73, 112
Hpy166II	GTNNAC	4 cut(s)	193, 250, 269, 653
Hpy188I	TCNGA	2 cut(s)	115, 784
Hpy188III	TCNNGA	1 cut(s)	750
Hpy8I	GTNNAC	4 cut(s)	193, 250, 269, 653
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	420, 666, 745
HpyCH4III	ACNGT	2 cut(s)	395, 828
HpyCH4V	TGCA	2 cut(s)	295, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 171
HpyF3I	CTNAG	3 cut(s)	114, 579, 783
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	287, 316, 742
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	17, 533, 607
LmnI	GCTCC	2 cut(s)	31, 179
Lsp1109I	GCAGC	4 cut(s)	94, 552, 673, 687
MaeI	CTAG	2 cut(s)	239, 750
MaeIII	GTNAC	3 cut(s)	100, 389, 395
MalI	GATC	3 cut(s)	19, 535, 609
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	3 cut(s)	17, 533, 607
MboII	GAAGA	7 cut(s)	16, 27, 80, 83, 318, 482, 559
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	7 cut(s)	88, 296, 354, 569, 583, 633, 724
MlyI	GAGTC	2 cut(s)	120, 762
MnlI	CCTC	5 cut(s)	3, 142, 309, 352, 713
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	3 cut(s)	300, 693, 819
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	29, 59
MspR9I	CCNGG	2 cut(s)	417, 714
MvaI	CCWGG	2 cut(s)	417, 714
MwoI	GCNNNNNNNGC	2 cut(s)	40, 171
NdeII	GATC	3 cut(s)	17, 533, 607
NlaIII	CATG	3 cut(s)	287, 316, 742
NlaIV	GGNNCC	7 cut(s)	33, 434, 535, 563, 701, 731, 825
NmuCI	GTSAC	3 cut(s)	100, 389, 395
NspI	RCATGY	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	520, 556, 746, 761
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	109, 173, 542, 663, 677
PleI	GAGTC	2 cut(s)	120, 761
PpsI	GAGTC	2 cut(s)	120, 761
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	415, 712
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	2 cut(s)	415, 712
PspN4I	GGNNCC	7 cut(s)	33, 434, 535, 563, 701, 731, 825
PspPI	GGNCC	3 cut(s)	561, 700, 710
PspPPI	RGGWCCY	1 cut(s)	700
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	300, 693, 819
SatI	GCNGC	5 cut(s)	108, 172, 541, 662, 676
Sau3AI	GATC	3 cut(s)	17, 533, 607
Sau96I	GGNCC	3 cut(s)	561, 700, 710
SchI	GAGTC	2 cut(s)	120, 762
ScrFI	CCNGG	2 cut(s)	417, 714
SetI	ASST	9 cut(s)	200, 247, 268, 320, 451, 465, 508, 658, 666
SfcI	CTRYAG	1 cut(s)	603
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	3 cut(s)	561, 700, 710
Sse9I	AATT	7 cut(s)	88, 296, 354, 569, 583, 633, 724
SsiI	CCGC	5 cut(s)	41, 105, 172, 183, 430
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	239, 750
StyD4I	CCNGG	2 cut(s)	415, 712
TaaI	ACNGT	2 cut(s)	395, 828
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	7 cut(s)	88, 296, 354, 569, 583, 633, 724
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	520, 556, 746, 761
Tru1I	TTAA	3 cut(s)	300, 693, 819
Tru9I	TTAA	3 cut(s)	300, 693, 819
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	3 cut(s)	100, 389, 395
TseI	GCWGC	4 cut(s)	107, 540, 661, 675
Tsp45I	GTSAC	3 cut(s)	100, 389, 395
TspDTI	ATGAA	5 cut(s)	17, 193, 492, 576, 727
TspGWI	ACGGA	2 cut(s)	138, 425
TspRI	CASTG	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	3 cut(s)	561, 700, 710
XapI	RAATTY	3 cut(s)	569, 583, 633
XbaI	TCTAGA	1 cut(s)	749
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	652
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	239, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.