Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007872

Physical Location & Seq

Genomic Coordinates Forward (+)

62336449 .. 62337416

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAGAGGCAGAGAAGATGATCAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCCCCAATTAAAAAACAGAAGACCTTGGATCGTGCCTTTGTTTGCAAGACGTGTAACCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGAGCGAGTCACAACAAACCAAAACTAATGGCCGGAAATGGTGCCTCCGACCTCTTACAGTTAGCACAGTCATCACCGAGCTCCCCGGCCAAGCCCAAGACCCACGAGTGTCCCATCTGCGGGCTTGAATTCGCGATCGGGCAAGCGCTTGGGGGTCACATGAGGAGACACAGGGATGTCATGACTTCCGCTGCTGCGGATCGGGTTCGGGCGGCAGCGGTGCCGCTGTTGAAAAAATCAACTAGTAGTAAATGGGTGTCATGCTTGGATCTGGATTTGAATTTGGCACCACCGGGATATCAACGTCATTACGATTTGACGAAGCTGCAGTTGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

172

Amino Acids

18.79

Weight (kDa)

9.56

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	94 - 118	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55860 AT1G70320
fragaria_vesca	FvH4_3g42950 FvH4_3g42950 FvH4_3g42950 FvH4_3g42950
malus_domestica	MD03G1027100.v1.1 MD11G1031000.v1.1
prunus_persica	Prupe.6G024400_v2.0.a1 Prupe.6G024400_v2.0.a1
pyrus_communis	pycom03g02210 pycom11g02630
rosa_chinensis	RchiOBHm_Chr5g0077001
rosa_laevigata	RLG00000036641
rosa_multiflora	Rmu_sc0003323.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005140
rosa_rugosa	Rorug05G0450000 Rorug05G0450000 Rorug05G0450100
rosa_samantha	Rh5AG504800 Rh5BG526500 Rh5CG550300 Rh5DG538700
rosa_wichuraiana	Rw5G047160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	218, 397, 463
AccII	CGCG	2 cut(s)	144, 311
AciI	CCGC	7 cut(s)	142, 297, 366, 374, 389, 395, 401
AclWI	GGATC	3 cut(s)	120, 384, 453
AcoI	YGGCCR	3 cut(s)	70, 207, 264
AcsI	RAATTY	2 cut(s)	305, 457
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	305, 409, 457
AhlI	ACTAGT	1 cut(s)	419
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	258, 502
AluI	AGCT	2 cut(s)	258, 502
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	120, 384, 453
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	3 cut(s)	70, 207, 264
ApeKI	GCWGC	4 cut(s)	368, 371, 392, 502
ApoI	RAATTY	2 cut(s)	305, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	263, 471
AsuHPI	GGTGA	1 cut(s)	243
BanI	GGYRCC	3 cut(s)	218, 397, 463
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	355, 358, 404, 489
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	2 cut(s)	263, 471
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	6 cut(s)	369, 372, 390, 393, 401, 503
BlsI	GCNGC	6 cut(s)	370, 373, 391, 394, 402, 504
Bme1390I	CCNGG	3 cut(s)	32, 263, 471
BmgBI	CACGTC	1 cut(s)	135
BmiI	GGNNCC	3 cut(s)	220, 399, 465
BmrFI	CCNGG	3 cut(s)	32, 263, 471
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpuMI	CCSGG	2 cut(s)	263, 471
BsaJI	CCNNGG	4 cut(s)	30, 108, 166, 261
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	30, 108, 166, 261
BseGI	GGATG	2 cut(s)	83, 358
BseLI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BseRI	GAGGAG	2 cut(s)	142, 355
BseXI	GCAGC	4 cut(s)	355, 358, 404, 489
Bsh1236I	CGCG	2 cut(s)	144, 311
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	72, 209, 266
BshNI	GGYRCC	3 cut(s)	218, 397, 463
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	210, 263, 470
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	72, 209, 266
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	5 cut(s)	22, 112, 312, 376, 445
Bsp68I	TCGCGA	1 cut(s)	311
BspACI	CCGC	7 cut(s)	142, 297, 366, 374, 389, 395, 401
BspANI	GGCC	3 cut(s)	72, 209, 266
BspFNI	CGCG	2 cut(s)	144, 311
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	220, 399, 465
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	3 cut(s)	120, 384, 453
BspT107I	GGYRCC	3 cut(s)	218, 397, 463
BssECI	CCNNGG	4 cut(s)	30, 108, 166, 261
BssMI	GATC	5 cut(s)	22, 112, 312, 376, 445
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	237, 246
BstC8I	GCNNGC	2 cut(s)	299, 321
BstF5I	GGATG	2 cut(s)	83, 358
BstFNI	CGCG	2 cut(s)	144, 311
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	5 cut(s)	25, 115, 315, 379, 448
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	5 cut(s)	22, 112, 312, 376, 445
BstMCI	CGRYCG	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	30, 261, 469
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	2 cut(s)	144, 311
BstV1I	GCAGC	4 cut(s)	355, 358, 404, 489
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	72, 209, 266
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	83, 358
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	299, 321
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	325
CviAII	CATG	3 cut(s)	337, 358, 438
CviJI	RGCY	8 cut(s)	72, 164, 209, 258, 266, 271, 301, 502
CviKI_1	RGCY	8 cut(s)	72, 164, 209, 258, 266, 271, 301, 502
DpnI	GATC	5 cut(s)	24, 114, 314, 378, 447
DpnII	GATC	5 cut(s)	22, 112, 312, 376, 445
EaeI	YGGCCR	3 cut(s)	70, 207, 264
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	340, 361, 441
FaiI	YATR	3 cut(s)	338, 359, 439
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	3 cut(s)	336, 357, 437
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	6 cut(s)	369, 372, 390, 393, 401, 503
FokI	GGATG	2 cut(s)	70, 365
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	369, 372, 390, 393, 401, 503
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	6 cut(s)	369, 372, 390, 393, 401, 503
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	72, 209, 266
HapII	CCGG	3 cut(s)	210, 263, 470
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	340, 361, 441
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	80, 184
HpaII	CCGG	3 cut(s)	210, 263, 470
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	27, 170, 226
Hpy188III	TCNNGA	4 cut(s)	310, 358, 449, 516
HpyCH4III	ACNGT	2 cut(s)	237, 246
HpyCH4IV	ACGT	2 cut(s)	134, 481
HpyCH4V	TGCA	2 cut(s)	129, 505
HpySE526I	ACGT	2 cut(s)	134, 481
Hsp92II	CATG	3 cut(s)	340, 361, 441
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 112, 312, 376, 445
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	17, 44, 223, 276, 334, 434, 483
Lsp1109I	GCAGC	4 cut(s)	355, 358, 404, 489
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	134, 481
MaeIII	GTNAC	4 cut(s)	137, 173, 185, 332
MalI	GATC	5 cut(s)	24, 114, 314, 378, 447
MboI	GATC	5 cut(s)	22, 112, 312, 376, 445
MboII	GAAGA	3 cut(s)	16, 29, 115
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	3 cut(s)	90, 305, 457
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	163, 164, 176, 232, 239, 333
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	3 cut(s)	368, 395, 403
MspI	CCGG	3 cut(s)	210, 263, 470
MspR9I	CCNGG	3 cut(s)	32, 263, 471
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	144, 311
NciI	CCSGG	2 cut(s)	263, 471
NdeII	GATC	5 cut(s)	22, 112, 312, 376, 445
NlaIII	CATG	3 cut(s)	340, 361, 441
NlaIV	GGNNCC	3 cut(s)	220, 399, 465
NmuCI	GTSAC	3 cut(s)	173, 185, 332
NruI	TCGCGA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	370, 373, 391, 394, 402, 504
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	220, 399, 465
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	315
RruI	TCGCGA	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	6 cut(s)	369, 372, 390, 393, 401, 503
Sau3AI	GATC	5 cut(s)	22, 112, 312, 376, 445
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	32, 263, 471
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	7 cut(s)	110, 137, 175, 231, 260, 484, 504
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	351
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	3 cut(s)	90, 305, 457
SsiI	CCGC	7 cut(s)	142, 297, 366, 374, 389, 395, 401
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	30, 261, 469
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	237, 246
TaiI	ACGT	2 cut(s)	137, 484
TasI	AATT	3 cut(s)	90, 305, 457
TauI	GCSGC	2 cut(s)	392, 403
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	3 cut(s)	173, 185, 332
TseI	GCWGC	4 cut(s)	368, 371, 392, 502
Tsp45I	GTSAC	3 cut(s)	173, 185, 332
TspDTI	ATGAA	2 cut(s)	17, 72
XapI	RAATTY	2 cut(s)	305, 457
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.